Wall clock time and date at job start Sun Mar 29 2020 21:53:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 N 1.46500 * 109.47367 * 2 1 4 4 C 1.36935 * 119.99700 * 269.56434 * 3 2 1 5 5 H 1.07992 * 120.00253 * 322.05014 * 4 3 2 6 6 C 1.38820 * 119.99814 * 142.05461 * 4 3 2 7 7 N 1.31616 * 119.99693 * 157.03700 * 6 4 3 8 8 Si 1.86798 * 120.00038 * 337.03851 * 6 4 3 9 9 H 1.48506 * 109.47198 * 95.69701 * 8 6 4 10 10 H 1.48498 * 109.47068 * 215.69538 * 8 6 4 11 11 H 1.48505 * 109.47229 * 335.69675 * 8 6 4 12 12 C 1.46497 * 119.99930 * 89.56106 * 3 2 1 13 13 C 1.50694 * 109.47054 * 90.00122 * 12 3 2 14 14 C 1.34512 * 125.78912 * 90.00259 * 13 12 3 15 15 C 1.41390 * 106.84300 * 180.02562 * 14 13 12 16 16 C 1.34516 * 106.83463 * 0.02562 * 15 14 13 17 17 C 1.50704 * 125.78360 * 179.74117 * 16 15 14 18 18 O 1.34300 * 108.42738 * 359.97438 * 16 15 14 19 19 H 1.08999 * 109.46959 * 59.99677 * 1 2 3 20 20 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 21 21 H 1.09007 * 109.46448 * 299.99917 * 1 2 3 22 22 H 1.08996 * 109.46868 * 239.99815 * 2 1 3 23 23 H 1.08999 * 109.46959 * 120.00323 * 2 1 3 24 24 H 0.96999 * 119.99669 * 180.02562 * 7 6 4 25 25 H 1.09007 * 109.46996 * 329.99956 * 12 3 2 26 26 H 1.09000 * 109.47135 * 210.00324 * 12 3 2 27 27 H 1.08001 * 126.57965 * 0.03572 * 14 13 12 28 28 H 1.07999 * 126.58205 * 180.02562 * 15 14 13 29 29 H 1.08993 * 109.47368 * 89.99661 * 17 16 15 30 30 H 1.09004 * 109.46582 * 209.99456 * 17 16 15 31 31 H 1.09001 * 109.46849 * 329.98885 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0185 1.3812 0.0000 4 6 2.2552 2.0236 -1.1859 5 1 2.6805 1.4822 -2.0179 6 6 1.9486 3.3710 -1.3186 7 7 2.5551 4.0969 -2.2337 8 14 0.6751 4.1538 -0.1984 9 1 1.3577 4.8014 0.9506 10 1 -0.0917 5.1741 -0.9576 11 1 -0.2531 3.1084 0.3025 12 6 2.2535 2.0750 1.2687 13 6 3.6735 1.8393 1.7145 14 6 4.7337 2.6058 1.4018 15 6 5.8598 2.0220 2.0265 16 6 5.4203 0.9334 2.6831 17 6 6.2715 -0.0109 3.4925 18 8 4.0954 0.8277 2.4908 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3632 0.5139 0.8901 22 1 1.8933 -0.5139 -0.8899 23 1 1.8934 -0.5139 0.8900 24 1 2.3412 5.0384 -2.3262 25 1 1.5671 1.6928 2.0244 26 1 2.0875 3.1439 1.1344 27 1 4.7262 3.4964 0.7909 28 1 6.8775 2.3812 1.9845 29 1 6.3136 0.3330 4.5259 30 1 5.8374 -1.0102 3.4595 31 1 7.2790 -0.0385 3.0773 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045060922.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:25 Heat of formation + Delta-G solvation = 12.858831 kcal Electronic energy + Delta-G solvation = -14009.198600 eV Core-core repulsion = 11678.347571 eV Total energy + Delta-G solvation = -2330.851030 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.37355 -38.14361 -34.08654 -33.95808 -33.24555 -31.27648 -29.07328 -26.08834 -25.15924 -22.69060 -21.99011 -21.06872 -19.14209 -17.49733 -17.09277 -17.00380 -16.07820 -15.45198 -15.10671 -14.69389 -14.44269 -13.89597 -13.85504 -13.67642 -13.62142 -13.13507 -13.10470 -12.66886 -12.60151 -12.34817 -12.05742 -11.68920 -11.63533 -10.72620 -10.70445 -9.14557 -8.91461 -8.24513 -5.64713 0.85438 1.27385 1.39221 1.50173 1.75074 2.10561 2.37811 3.02341 3.36711 3.89221 4.06470 4.22283 4.32471 4.36335 4.49773 4.64996 4.75570 4.76884 4.77801 4.92358 4.99933 5.03042 5.20856 5.22034 5.38362 5.51149 5.73720 5.88881 6.12895 6.36617 6.88375 7.52917 7.96253 8.94697 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031806 B = 0.011818 C = 0.009949 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 880.134745 B = 2368.796847 C = 2813.639353 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.139 3.861 3 N -0.603 5.603 4 C -0.261 4.261 5 H 0.037 0.963 6 C -0.011 4.011 7 N -0.940 5.940 8 Si 0.928 3.072 9 H -0.273 1.273 10 H -0.302 1.302 11 H -0.245 1.245 12 C 0.207 3.793 13 C -0.029 4.029 14 C -0.225 4.225 15 C -0.226 4.226 16 C -0.033 4.033 17 C -0.063 4.063 18 O -0.186 6.186 19 H 0.036 0.964 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.044 0.956 23 H 0.059 0.941 24 H 0.265 0.735 25 H 0.084 0.916 26 H 0.068 0.932 27 H 0.121 0.879 28 H 0.164 0.836 29 H 0.097 0.903 30 H 0.081 0.919 31 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.417 -7.189 12.299 14.449 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.015 3.985 3 N -0.325 5.325 4 C -0.391 4.391 5 H 0.055 0.945 6 C -0.208 4.208 7 N -0.583 5.583 8 Si 0.755 3.245 9 H -0.200 1.200 10 H -0.230 1.230 11 H -0.169 1.169 12 C 0.081 3.919 13 C -0.081 4.081 14 C -0.245 4.245 15 C -0.245 4.245 16 C -0.083 4.083 17 C -0.119 4.119 18 O -0.084 6.084 19 H 0.055 0.945 20 H 0.095 0.905 21 H 0.065 0.935 22 H 0.063 0.937 23 H 0.078 0.922 24 H 0.074 0.926 25 H 0.102 0.898 26 H 0.085 0.915 27 H 0.139 0.861 28 H 0.182 0.818 29 H 0.116 0.884 30 H 0.100 0.900 31 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 2.215 -7.315 12.312 14.491 hybrid contribution -0.252 1.186 -0.449 1.293 sum 1.964 -6.128 11.863 13.496 Atomic orbital electron populations 1.22185 0.97147 1.01514 1.00863 1.21059 0.93554 0.84036 0.99886 1.44321 1.74704 1.12862 1.00635 1.18563 1.35868 0.93521 0.91130 0.94499 1.26035 0.99154 0.97260 0.98359 1.70008 1.42180 1.07381 1.38760 0.86079 0.81474 0.78443 0.78526 1.20015 1.23049 1.16863 1.19921 0.86659 0.97268 0.88087 1.23995 0.99641 0.88529 0.95958 1.21642 0.93626 1.03622 1.05646 1.21785 1.00296 0.98637 1.03764 1.23286 0.81538 0.99989 1.03537 1.20434 0.96857 0.96087 0.98508 1.83935 1.24309 1.44436 1.55689 0.94505 0.90467 0.93452 0.93748 0.92248 0.92629 0.89760 0.91455 0.86127 0.81841 0.88425 0.89963 0.87770 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.45 10.24 71.98 0.74 -4.71 16 2 C 0.14 5.52 6.39 86.38 0.55 6.07 16 3 N -0.60 -29.01 2.05 -706.35 -1.45 -30.46 16 4 C -0.26 -14.99 9.90 84.04 0.83 -14.16 16 5 H 0.04 2.38 8.06 -2.91 -0.02 2.36 16 6 C -0.01 -0.62 5.29 84.86 0.45 -0.17 16 7 N -0.94 -58.65 13.97 21.65 0.30 -58.35 16 8 Si 0.93 44.95 25.10 68.60 1.72 46.67 16 9 H -0.27 -12.68 6.68 99.48 0.66 -12.01 16 10 H -0.30 -14.80 7.11 99.48 0.71 -14.09 16 11 H -0.25 -11.09 7.11 99.48 0.71 -10.38 16 12 C 0.21 9.18 5.04 85.63 0.43 9.61 16 13 C -0.03 -1.25 6.90 24.83 0.17 -1.08 16 14 C -0.22 -9.95 10.81 22.19 0.24 -9.71 16 15 C -0.23 -8.09 10.81 22.19 0.24 -7.85 16 16 C -0.03 -1.09 7.32 24.83 0.18 -0.91 16 17 C -0.06 -1.23 10.42 71.24 0.74 -0.49 16 18 O -0.19 -7.25 10.65 -2.51 -0.03 -7.28 16 19 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 20 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 21 H 0.05 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.04 1.81 8.04 -2.39 -0.02 1.79 16 23 H 0.06 2.13 8.08 -2.39 -0.02 2.11 16 24 H 0.26 15.59 8.31 -92.71 -0.77 14.82 16 25 H 0.08 3.21 8.07 -2.38 -0.02 3.19 16 26 H 0.07 3.19 3.37 -2.39 -0.01 3.18 16 27 H 0.12 5.80 8.06 -2.91 -0.02 5.77 16 28 H 0.16 4.79 8.06 -2.91 -0.02 4.77 16 29 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 30 H 0.08 1.47 8.14 -2.38 -0.02 1.45 16 31 H 0.10 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -67.92 264.67 6.18 -61.74 By element: Atomic # 1 Polarization: 10.01 SS G_CDS: 1.05 Total: 11.07 kcal Atomic # 6 Polarization: -27.97 SS G_CDS: 4.58 Total: -23.39 kcal Atomic # 7 Polarization: -87.66 SS G_CDS: -1.15 Total: -88.81 kcal Atomic # 8 Polarization: -7.25 SS G_CDS: -0.03 Total: -7.28 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 1.72 Total: 46.67 kcal Total: -67.92 6.18 -61.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045060922.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.597 kcal (2) G-P(sol) polarization free energy of solvation -67.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds