Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99720 * 2 1 4 4 H 1.48509 * 109.46914 * 239.99611 * 3 2 1 5 5 H 1.48502 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47504 * 120.00157 * 3 2 1 7 7 C 1.40048 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99847 * 355.03954 * 7 2 1 9 9 C 1.46373 * 119.99859 * 175.04182 * 7 2 1 10 10 O 1.21691 * 120.00294 * 6.32101 * 9 7 2 11 11 N 1.34779 * 120.00077 * 186.31684 * 9 7 2 12 12 C 1.46493 * 119.99863 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46862 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.64251 * 305.41841 * 13 12 11 15 15 C 1.53027 * 109.64190 * 66.05735 * 13 12 11 16 16 C 1.50072 * 110.14369 * 169.12186 * 15 13 12 17 17 C 1.29441 * 124.07706 * 342.86132 * 16 15 13 18 18 C 1.50063 * 124.07814 * 0.48057 * 17 16 15 19 19 C 1.53033 * 110.14348 * 342.85986 * 18 17 16 20 20 H 0.97004 * 120.00195 * 185.08977 * 1 2 3 21 21 H 0.97004 * 119.99632 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.47316 * 300.00478 * 12 11 9 23 23 H 1.08997 * 109.47361 * 60.00729 * 12 11 9 24 24 H 1.08996 * 109.35378 * 289.32363 * 15 13 12 25 25 H 1.08996 * 109.35555 * 48.91331 * 15 13 12 26 26 H 1.08003 * 117.96010 * 162.89450 * 16 15 13 27 27 H 1.08000 * 117.96285 * 180.48952 * 17 16 15 28 28 H 1.08997 * 109.35881 * 222.65848 * 18 17 16 29 29 H 1.08995 * 109.25118 * 102.99959 * 18 17 16 30 30 H 1.08999 * 109.64447 * 289.75285 * 19 18 17 31 31 H 1.09006 * 109.81290 * 169.22679 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 1.4700 -2.1463 0.0818 9 6 3.4666 -1.2153 -0.1090 10 8 4.0803 -0.1648 -0.0847 11 7 4.1309 -2.3810 -0.2367 12 6 5.5917 -2.3833 -0.3470 13 6 6.0906 -3.8234 -0.4812 14 1 5.7122 -4.4211 0.3480 15 6 5.6085 -4.4133 -1.8083 16 6 6.3013 -5.7173 -2.0763 17 6 7.3838 -6.0997 -1.4786 18 6 8.0918 -5.2972 -0.4266 19 6 7.6245 -3.8407 -0.4714 20 1 -0.4850 -0.8367 0.0745 21 1 3.6416 -3.2184 -0.2564 22 1 5.8907 -1.8121 -1.2258 23 1 6.0241 -1.9303 0.5451 24 1 4.5323 -4.5792 -1.7601 25 1 5.8286 -3.7146 -2.6154 26 1 5.8700 -6.3775 -2.8143 27 1 7.8038 -7.0557 -1.7542 28 1 9.1665 -5.3373 -0.6038 29 1 7.8715 -5.7173 0.5548 30 1 8.0021 -3.3623 -1.3750 31 1 7.9913 -3.3078 0.4060 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045647461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = -63.629374 kcal Electronic energy + Delta-G solvation = -13508.499978 eV Core-core repulsion = 11174.332171 eV Total energy + Delta-G solvation = -2334.167807 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -38.96902 -37.49824 -33.94419 -32.80911 -31.07833 -30.49426 -26.75629 -24.72351 -22.97830 -20.91179 -19.72121 -18.00874 -17.83348 -16.14044 -15.15270 -14.96943 -14.40085 -13.96874 -13.59017 -13.46402 -13.09518 -12.55412 -12.48033 -12.27053 -12.09020 -11.71274 -11.50457 -10.65646 -10.44766 -10.27461 -10.18232 -10.06139 -9.21129 -9.01240 -8.90906 -7.93975 -7.84545 -6.95764 -4.89391 2.26122 3.63661 3.72303 4.11361 4.39237 4.46143 4.63409 4.71389 4.76842 5.03269 5.25566 5.30268 5.37087 5.50246 5.55615 5.59402 5.82817 5.83982 5.98069 6.06588 6.15424 6.18555 6.36981 6.55298 6.65233 6.92622 7.53364 7.74045 7.79558 8.14153 8.87105 9.11799 10.10154 10.36593 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064673 B = 0.006860 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.846203 B = 4080.699602 C = 4361.411673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.059 3.941 3 Si 1.136 2.864 4 H -0.288 1.288 5 H -0.325 1.325 6 H -0.289 1.289 7 C -0.599 4.599 8 H 0.069 0.931 9 C 0.551 3.449 10 O -0.619 6.619 11 N -0.756 5.756 12 C 0.134 3.866 13 C -0.098 4.098 14 H 0.074 0.926 15 C -0.088 4.088 16 C -0.148 4.148 17 C -0.165 4.165 18 C -0.088 4.088 19 C -0.113 4.113 20 H 0.276 0.724 21 H 0.386 0.614 22 H 0.052 0.948 23 H 0.052 0.948 24 H 0.074 0.926 25 H 0.076 0.924 26 H 0.100 0.900 27 H 0.098 0.902 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.065 0.935 31 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.447 -11.165 -2.125 16.855 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.462 5.462 2 C -0.158 4.158 3 Si 0.970 3.030 4 H -0.216 1.216 5 H -0.257 1.257 6 H -0.217 1.217 7 C -0.636 4.636 8 H 0.087 0.913 9 C 0.359 3.641 10 O -0.513 6.513 11 N -0.407 5.407 12 C 0.009 3.991 13 C -0.116 4.116 14 H 0.093 0.907 15 C -0.125 4.125 16 C -0.166 4.166 17 C -0.183 4.183 18 C -0.125 4.125 19 C -0.151 4.151 20 H 0.087 0.913 21 H 0.219 0.781 22 H 0.071 0.929 23 H 0.071 0.929 24 H 0.092 0.908 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.116 0.884 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 12.638 -8.927 -2.180 15.626 hybrid contribution -0.143 -2.563 -0.012 2.567 sum 12.495 -11.490 -2.192 17.116 Atomic orbital electron populations 1.70667 1.07602 1.31908 1.36064 1.27174 0.95332 1.05046 0.88261 0.82260 0.71093 0.70617 0.79052 1.21560 1.25686 1.21685 1.22051 0.90161 0.96277 1.55086 0.91269 1.18423 0.88733 0.81519 0.75400 1.90078 1.69541 1.30861 1.60816 1.45722 1.05128 1.09318 1.80551 1.21047 0.83081 0.94123 1.00841 1.21447 0.95611 0.96708 0.97879 0.90721 1.20525 0.99999 0.94459 0.97489 1.22135 0.96729 0.97909 0.99829 1.22017 0.97361 0.99898 0.99043 1.20427 0.99326 0.94853 0.97942 1.21586 0.94986 0.96059 1.02444 0.91295 0.78139 0.92935 0.92932 0.90779 0.90567 0.88227 0.88386 0.91297 0.91076 0.91587 0.91366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -24.52 13.64 55.55 0.76 -23.76 16 2 C 0.06 1.74 5.52 -17.37 -0.10 1.64 16 3 Si 1.14 30.78 25.82 -169.99 -4.39 26.39 16 4 H -0.29 -7.97 6.99 56.52 0.39 -7.57 16 5 H -0.32 -8.43 7.11 56.52 0.40 -8.02 16 6 H -0.29 -7.95 7.10 56.52 0.40 -7.55 16 7 C -0.60 -17.27 9.96 -35.63 -0.35 -17.62 16 8 H 0.07 1.96 8.05 -52.49 -0.42 1.53 16 9 C 0.55 14.99 7.61 -12.99 -0.10 14.89 16 10 O -0.62 -18.27 12.11 5.20 0.06 -18.21 16 11 N -0.76 -16.23 5.36 -61.73 -0.33 -16.56 16 12 C 0.13 2.42 5.07 -4.04 -0.02 2.40 16 13 C -0.10 -1.34 2.27 -90.40 -0.21 -1.54 16 14 H 0.07 1.02 8.13 -51.93 -0.42 0.60 16 15 C -0.09 -1.15 5.20 -28.17 -0.15 -1.29 16 16 C -0.15 -1.69 9.80 -35.90 -0.35 -2.04 16 17 C -0.17 -1.74 9.80 -35.90 -0.35 -2.09 16 18 C -0.09 -0.89 6.12 -28.17 -0.17 -1.06 16 19 C -0.11 -1.31 5.31 -26.51 -0.14 -1.45 16 20 H 0.28 7.78 8.72 -40.82 -0.36 7.43 16 21 H 0.39 7.43 7.80 -40.82 -0.32 7.11 16 22 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 23 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 24 H 0.07 1.00 7.54 -51.93 -0.39 0.60 16 25 H 0.08 1.03 8.06 -51.93 -0.42 0.62 16 26 H 0.10 1.02 8.06 -52.48 -0.42 0.59 16 27 H 0.10 0.89 8.06 -52.49 -0.42 0.46 16 28 H 0.07 0.60 8.14 -51.93 -0.42 0.17 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 30 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 31 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 LS Contribution 257.98 15.07 3.89 3.89 Total: -1.00 -31.90 257.98 -6.46 -38.36 By element: Atomic # 1 Polarization: 2.58 SS G_CDS: -4.51 Total: -1.93 kcal Atomic # 6 Polarization: -6.23 SS G_CDS: -1.94 Total: -8.16 kcal Atomic # 7 Polarization: -40.75 SS G_CDS: 0.43 Total: -40.32 kcal Atomic # 8 Polarization: -18.27 SS G_CDS: 0.06 Total: -18.21 kcal Atomic # 14 Polarization: 30.78 SS G_CDS: -4.39 Total: 26.39 kcal Total LS contribution 3.89 Total: 3.89 kcal Total: -31.90 -6.46 -38.36 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045647461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.271 kcal (2) G-P(sol) polarization free energy of solvation -31.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.168 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.461 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.629 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds