Wall clock time and date at job start Sun Mar 29 2020 21:36:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30673 * 1 3 3 Si 1.86798 * 119.99720 * 2 1 4 4 H 1.48509 * 109.46914 * 239.99611 * 3 2 1 5 5 H 1.48502 * 109.47501 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47504 * 120.00157 * 3 2 1 7 7 C 1.40048 * 119.99942 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99847 * 355.03954 * 7 2 1 9 9 C 1.46373 * 119.99859 * 175.04182 * 7 2 1 10 10 O 1.21691 * 120.00294 * 6.32101 * 9 7 2 11 11 N 1.34779 * 120.00077 * 186.31684 * 9 7 2 12 12 C 1.46493 * 119.99863 * 179.97438 * 11 9 7 13 13 C 1.53002 * 109.46862 * 180.02562 * 12 11 9 14 14 H 1.08993 * 109.64251 * 305.41841 * 13 12 11 15 15 C 1.53027 * 109.64190 * 66.05735 * 13 12 11 16 16 C 1.50072 * 110.14369 * 169.12186 * 15 13 12 17 17 C 1.29441 * 124.07706 * 342.86132 * 16 15 13 18 18 C 1.50063 * 124.07814 * 0.48057 * 17 16 15 19 19 C 1.53033 * 110.14348 * 342.85986 * 18 17 16 20 20 H 0.97004 * 120.00195 * 185.08977 * 1 2 3 21 21 H 0.97004 * 119.99632 * 0.02562 * 11 9 7 22 22 H 1.09001 * 109.47316 * 300.00478 * 12 11 9 23 23 H 1.08997 * 109.47361 * 60.00729 * 12 11 9 24 24 H 1.08996 * 109.35378 * 289.32363 * 15 13 12 25 25 H 1.08996 * 109.35555 * 48.91331 * 15 13 12 26 26 H 1.08003 * 117.96010 * 162.89450 * 16 15 13 27 27 H 1.08000 * 117.96285 * 180.48952 * 17 16 15 28 28 H 1.08997 * 109.35881 * 222.65848 * 18 17 16 29 29 H 1.08995 * 109.25118 * 102.99959 * 18 17 16 30 30 H 1.08999 * 109.64447 * 289.75285 * 19 18 17 31 31 H 1.09006 * 109.81290 * 169.22679 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2406 1.6178 0.0000 4 1 3.0945 1.6964 -1.2125 5 1 1.2756 2.7465 -0.0006 6 1 3.0944 1.6965 1.2124 7 6 2.0070 -1.2129 0.0005 8 1 1.4700 -2.1463 0.0818 9 6 3.4666 -1.2153 -0.1090 10 8 4.0803 -0.1648 -0.0847 11 7 4.1309 -2.3810 -0.2367 12 6 5.5917 -2.3833 -0.3470 13 6 6.0906 -3.8234 -0.4812 14 1 5.7122 -4.4211 0.3480 15 6 5.6085 -4.4133 -1.8083 16 6 6.3013 -5.7173 -2.0763 17 6 7.3838 -6.0997 -1.4786 18 6 8.0918 -5.2972 -0.4266 19 6 7.6245 -3.8407 -0.4714 20 1 -0.4850 -0.8367 0.0745 21 1 3.6416 -3.2184 -0.2564 22 1 5.8907 -1.8121 -1.2258 23 1 6.0241 -1.9303 0.5451 24 1 4.5323 -4.5792 -1.7601 25 1 5.8286 -3.7146 -2.6154 26 1 5.8700 -6.3775 -2.8143 27 1 7.8038 -7.0557 -1.7542 28 1 9.1665 -5.3373 -0.6038 29 1 7.8715 -5.7173 0.5548 30 1 8.0021 -3.3623 -1.3750 31 1 7.9913 -3.3078 0.4060 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045647461.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:34 Heat of formation + Delta-G solvation = -84.942373 kcal Electronic energy + Delta-G solvation = -13509.424179 eV Core-core repulsion = 11174.332171 eV Total energy + Delta-G solvation = -2335.092008 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.34431 -39.21605 -35.59838 -35.02865 -32.29547 -31.55617 -28.68736 -26.27539 -23.96697 -22.12759 -21.72391 -20.09635 -18.81450 -17.56318 -16.89799 -16.60447 -15.86520 -15.71319 -15.05657 -14.90901 -14.46526 -14.22316 -14.11773 -13.78563 -13.21302 -12.90565 -12.84815 -12.43089 -12.41372 -11.68501 -11.47813 -11.35470 -11.16155 -11.04871 -10.13646 -9.85966 -9.74060 -9.21653 -7.15430 1.42955 1.43849 1.54033 1.97112 2.20298 2.39821 2.91957 3.27545 3.69169 3.76648 3.94275 4.26703 4.34110 4.45688 4.51927 4.66968 4.75063 4.82630 4.87982 5.03558 5.07404 5.11953 5.28901 5.42694 5.46559 5.51529 5.79276 5.87391 6.02283 6.08159 6.62430 7.14682 7.97880 8.10254 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064673 B = 0.006860 C = 0.006418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 432.846203 B = 4080.699602 C = 4361.411673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.847 5.847 2 C 0.028 3.972 3 Si 1.167 2.833 4 H -0.299 1.299 5 H -0.307 1.307 6 H -0.298 1.298 7 C -0.617 4.617 8 H 0.067 0.933 9 C 0.547 3.453 10 O -0.644 6.644 11 N -0.741 5.741 12 C 0.134 3.866 13 C -0.087 4.087 14 H 0.079 0.921 15 C -0.087 4.087 16 C -0.165 4.165 17 C -0.157 4.157 18 C -0.088 4.088 19 C -0.112 4.112 20 H 0.278 0.722 21 H 0.398 0.602 22 H 0.042 0.958 23 H 0.045 0.955 24 H 0.065 0.935 25 H 0.066 0.934 26 H 0.111 0.889 27 H 0.118 0.882 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.064 0.936 31 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.883 -12.442 -2.133 18.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.476 5.476 2 C -0.186 4.186 3 Si 1.000 3.000 4 H -0.228 1.228 5 H -0.238 1.238 6 H -0.226 1.226 7 C -0.654 4.654 8 H 0.085 0.915 9 C 0.353 3.647 10 O -0.540 6.540 11 N -0.392 5.392 12 C 0.009 3.991 13 C -0.106 4.106 14 H 0.097 0.903 15 C -0.124 4.124 16 C -0.183 4.183 17 C -0.175 4.175 18 C -0.125 4.125 19 C -0.150 4.150 20 H 0.088 0.912 21 H 0.233 0.767 22 H 0.061 0.939 23 H 0.064 0.936 24 H 0.084 0.916 25 H 0.084 0.916 26 H 0.129 0.871 27 H 0.136 0.864 28 H 0.107 0.893 29 H 0.098 0.902 30 H 0.083 0.917 31 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 14.068 -10.245 -2.190 17.540 hybrid contribution -0.531 -2.235 -0.005 2.297 sum 13.537 -12.480 -2.195 18.542 Atomic orbital electron populations 1.70669 1.07744 1.32124 1.37030 1.27812 0.95730 1.06794 0.88296 0.81838 0.70417 0.69823 0.77961 1.22793 1.23765 1.22606 1.22244 0.91386 0.96182 1.55591 0.91500 1.18351 0.88545 0.82595 0.75223 1.90059 1.69986 1.32175 1.61732 1.45513 1.06822 1.08251 1.78566 1.21233 0.80617 0.97215 0.99988 1.21362 0.97262 0.93487 0.98459 0.90298 1.20469 0.99789 0.95450 0.96701 1.22104 0.97542 0.97391 1.01255 1.22275 0.96580 1.00510 0.98153 1.20478 1.00446 0.93273 0.98306 1.21594 0.92996 0.97684 1.02692 0.91174 0.76722 0.93949 0.93620 0.91650 0.91574 0.87149 0.86365 0.89294 0.90204 0.91713 0.90856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -49.53 13.64 21.84 0.30 -49.23 16 2 C 0.03 1.65 5.52 85.30 0.47 2.12 16 3 Si 1.17 62.35 25.82 68.60 1.77 64.12 16 4 H -0.30 -16.45 6.99 99.48 0.69 -15.76 16 5 H -0.31 -15.30 7.11 99.48 0.71 -14.60 16 6 H -0.30 -16.21 7.10 99.48 0.71 -15.50 16 7 C -0.62 -35.56 9.96 24.83 0.25 -35.32 16 8 H 0.07 3.79 8.05 -2.91 -0.02 3.77 16 9 C 0.55 29.64 7.61 86.36 0.66 30.29 16 10 O -0.64 -37.92 12.11 -4.32 -0.05 -37.97 16 11 N -0.74 -31.37 5.36 -467.42 -2.51 -33.88 16 12 C 0.13 4.71 5.07 86.38 0.44 5.15 16 13 C -0.09 -2.23 2.27 -10.65 -0.02 -2.26 16 14 H 0.08 1.99 8.13 -2.39 -0.02 1.97 16 15 C -0.09 -2.16 5.20 29.66 0.15 -2.00 16 16 C -0.16 -3.38 9.80 27.04 0.27 -3.12 16 17 C -0.16 -2.79 9.80 27.04 0.27 -2.53 16 18 C -0.09 -1.47 6.12 29.66 0.18 -1.29 16 19 C -0.11 -2.33 5.31 30.74 0.16 -2.16 16 20 H 0.28 15.63 8.72 -92.71 -0.81 14.83 16 21 H 0.40 14.97 7.80 -92.71 -0.72 14.25 16 22 H 0.04 1.59 8.09 -2.39 -0.02 1.57 16 23 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 24 H 0.06 1.70 7.54 -2.39 -0.02 1.68 16 25 H 0.07 1.75 8.06 -2.39 -0.02 1.73 16 26 H 0.11 2.01 8.06 -2.91 -0.02 1.98 16 27 H 0.12 1.66 8.06 -2.91 -0.02 1.64 16 28 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 30 H 0.06 1.37 8.12 -2.39 -0.02 1.35 16 31 H 0.07 1.46 8.14 -2.38 -0.02 1.44 16 Total: -1.00 -66.33 257.98 2.66 -63.67 By element: Atomic # 1 Polarization: 4.08 SS G_CDS: 0.33 Total: 4.41 kcal Atomic # 6 Polarization: -13.93 SS G_CDS: 2.82 Total: -11.12 kcal Atomic # 7 Polarization: -80.90 SS G_CDS: -2.21 Total: -83.11 kcal Atomic # 8 Polarization: -37.92 SS G_CDS: -0.05 Total: -37.97 kcal Atomic # 14 Polarization: 62.35 SS G_CDS: 1.77 Total: 64.12 kcal Total: -66.33 2.66 -63.67 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045647461.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.277 kcal (2) G-P(sol) polarization free energy of solvation -66.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.660 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.666 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds