Wall clock time and date at job start Sun Mar 29 2020 21:53:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.50697 * 109.47466 * 120.00144 * 2 1 3 5 5 H 1.07998 * 120.00039 * 119.99581 * 4 2 1 6 6 C 1.37880 * 119.99815 * 300.00179 * 4 2 1 7 7 N 1.31517 * 119.99524 * 179.97438 * 6 4 2 8 8 Si 1.86794 * 120.00267 * 359.97438 * 6 4 2 9 9 H 1.48506 * 109.46589 * 89.99875 * 8 6 4 10 10 H 1.48490 * 109.47303 * 209.99928 * 8 6 4 11 11 H 1.48497 * 109.46869 * 330.00523 * 8 6 4 12 12 N 1.46906 * 109.47302 * 240.00536 * 2 1 3 13 13 C 1.46900 * 110.99578 * 306.04553 * 12 2 1 14 14 C 1.46902 * 110.99986 * 69.99637 * 12 2 1 15 15 C 1.50702 * 109.47004 * 170.00406 * 14 12 2 16 16 C 1.34512 * 125.79060 * 89.71427 * 15 14 12 17 17 C 1.41380 * 106.84167 * 179.89053 * 16 15 14 18 18 C 1.34516 * 106.84166 * 0.37301 * 17 16 15 19 19 O 1.34299 * 125.78801 * 270.02859 * 15 14 12 20 20 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 23 23 H 0.97001 * 119.99599 * 179.97438 * 7 6 4 24 24 H 1.08995 * 109.47375 * 59.99750 * 13 12 2 25 25 H 1.09001 * 109.47293 * 180.02562 * 13 12 2 26 26 H 1.09003 * 109.47189 * 300.00178 * 13 12 2 27 27 H 1.08996 * 109.46774 * 290.00336 * 14 12 2 28 28 H 1.08998 * 109.47182 * 50.00557 * 14 12 2 29 29 H 1.08000 * 126.57958 * 0.02562 * 16 15 14 30 30 H 1.07997 * 126.58015 * 180.16399 * 17 16 15 31 31 H 1.07993 * 125.78892 * 179.79043 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1313 6 6 1.6993 -0.2394 2.4827 7 7 2.1374 -0.8597 3.5564 8 14 0.6259 1.2797 2.6542 9 1 -0.8020 0.8742 2.6994 10 1 0.9772 1.9952 3.9071 11 1 0.8490 2.1772 1.4923 12 7 2.0197 -0.6924 -1.1995 13 6 1.4343 -2.0354 -1.3079 14 6 1.7529 0.0974 -2.4091 15 6 2.4774 -0.5161 -3.5795 16 6 1.9864 -1.4615 -4.4008 17 6 2.9940 -1.7409 -5.3524 18 6 4.0435 -0.9555 -5.0507 19 8 3.7249 -0.2158 -3.9759 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.9033 -0.5281 4.4375 24 1 0.3491 -1.9548 -1.3694 25 1 1.8140 -2.5260 -2.2042 26 1 1.7059 -2.6220 -0.4303 27 1 0.6814 0.1054 -2.6087 28 1 2.1025 1.1190 -2.2604 29 1 1.0091 -1.9178 -4.3453 30 1 2.9339 -2.4513 -6.1636 31 1 4.9828 -0.9247 -5.5827 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000048208992.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:05 Heat of formation + Delta-G solvation = 32.773054 kcal Electronic energy + Delta-G solvation = -13870.654988 eV Core-core repulsion = 11540.667504 eV Total energy + Delta-G solvation = -2329.987484 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.28756 -37.52640 -33.08373 -32.52299 -30.86858 -28.86864 -26.57892 -25.28989 -23.51406 -21.46440 -20.27981 -19.33391 -17.09218 -16.61150 -15.89356 -15.22742 -14.56662 -14.23289 -13.86173 -13.11161 -13.05919 -12.60027 -12.48030 -12.24514 -12.06085 -11.50799 -11.21996 -11.07326 -10.87711 -10.29941 -10.05219 -9.67366 -9.55096 -9.10145 -8.59895 -8.24682 -7.40962 -6.07021 -4.05363 1.98602 2.82287 3.24467 3.27913 3.34591 3.37602 4.38455 4.81587 5.02095 5.22662 5.23793 5.30692 5.58827 5.80143 5.99763 6.05476 6.10967 6.18158 6.24611 6.26335 6.34872 6.49037 6.66416 6.73343 6.86269 7.13697 7.41577 7.59667 7.86233 8.00057 8.63662 9.01345 9.54357 11.06136 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.059193 B = 0.007818 C = 0.007681 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 472.915221 B = 3580.590965 C = 3644.551086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.182 3.818 3 H 0.041 0.959 4 C -0.502 4.502 5 H 0.083 0.917 6 C 0.069 3.931 7 N -0.899 5.899 8 Si 0.886 3.114 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.268 1.268 12 N -0.519 5.519 13 C 0.027 3.973 14 C 0.121 3.879 15 C 0.023 3.977 16 C -0.221 4.221 17 C -0.215 4.215 18 C -0.052 4.052 19 O -0.168 6.168 20 H 0.046 0.954 21 H 0.059 0.941 22 H 0.028 0.972 23 H 0.264 0.736 24 H 0.021 0.979 25 H 0.052 0.948 26 H 0.080 0.920 27 H 0.060 0.940 28 H 0.085 0.915 29 H 0.143 0.857 30 H 0.143 0.857 31 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.407 0.784 -14.787 14.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.247 4.247 2 C 0.074 3.926 3 H 0.059 0.941 4 C -0.540 4.540 5 H 0.101 0.899 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.717 3.283 9 H -0.208 1.208 10 H -0.224 1.224 11 H -0.193 1.193 12 N -0.243 5.243 13 C -0.121 4.121 14 C -0.007 4.007 15 C -0.029 4.029 16 C -0.241 4.241 17 C -0.234 4.234 18 C -0.120 4.120 19 O -0.064 6.064 20 H 0.065 0.935 21 H 0.078 0.922 22 H 0.047 0.953 23 H 0.074 0.926 24 H 0.039 0.961 25 H 0.070 0.930 26 H 0.099 0.901 27 H 0.078 0.922 28 H 0.104 0.896 29 H 0.160 0.840 30 H 0.161 0.839 31 H 0.214 0.786 Dipole moment (debyes) X Y Z Total from point charges -0.699 0.949 -14.380 14.428 hybrid contribution -1.590 0.614 -0.030 1.705 sum -2.290 1.564 -14.410 14.675 Atomic orbital electron populations 1.22855 1.01560 1.01276 0.99021 1.19828 0.88805 0.95323 0.88599 0.94099 1.20912 1.31554 1.13856 0.87658 0.89950 1.24914 0.95914 0.96606 0.95783 1.69880 1.45700 1.40295 0.97868 0.86888 0.80500 0.83915 0.77020 1.20763 1.22352 1.19320 1.62168 1.58997 1.02564 1.00548 1.22392 0.96241 0.91299 1.02184 1.20565 0.95565 0.97731 0.86805 1.22564 0.83198 0.99127 0.97989 1.21532 1.01833 1.02126 0.98584 1.21740 0.94638 1.04166 1.02880 1.23935 1.00911 0.96439 0.90756 1.84055 1.29902 1.53664 1.38732 0.93506 0.92202 0.95284 0.92606 0.96105 0.92952 0.90147 0.92238 0.89624 0.83957 0.83947 0.78585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 7.92 37.16 0.29 -3.72 16 2 C 0.18 4.27 1.90 -68.86 -0.13 4.14 16 3 H 0.04 0.99 6.99 -51.93 -0.36 0.63 16 4 C -0.50 -14.02 8.55 -34.44 -0.29 -14.32 16 5 H 0.08 2.53 7.35 -52.49 -0.39 2.15 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.39 13.96 55.43 0.77 -26.62 16 8 Si 0.89 21.73 24.37 -169.99 -4.14 17.59 16 9 H -0.28 -6.70 6.87 56.52 0.39 -6.31 16 10 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 11 H -0.27 -6.27 6.53 56.52 0.37 -5.90 16 12 N -0.52 -10.91 4.69 -237.73 -1.12 -12.03 16 13 C 0.03 0.52 8.58 60.06 0.52 1.04 16 14 C 0.12 2.12 5.07 -4.97 -0.03 2.10 16 15 C 0.02 0.37 6.24 -35.62 -0.22 0.15 16 16 C -0.22 -3.26 9.28 -39.70 -0.37 -3.63 16 17 C -0.22 -2.80 10.91 -39.70 -0.43 -3.23 16 18 C -0.05 -0.68 12.09 29.42 0.36 -0.33 16 19 O -0.17 -2.80 10.65 5.71 0.06 -2.74 16 20 H 0.05 1.05 3.27 -51.93 -0.17 0.88 16 21 H 0.06 1.25 6.33 -51.93 -0.33 0.92 16 22 H 0.03 0.52 6.91 -51.93 -0.36 0.17 16 23 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 24 H 0.02 0.37 6.21 -51.93 -0.32 0.05 16 25 H 0.05 0.92 6.08 -51.93 -0.32 0.60 16 26 H 0.08 1.72 6.86 -51.93 -0.36 1.37 16 27 H 0.06 0.95 7.06 -51.93 -0.37 0.58 16 28 H 0.09 1.46 7.93 -51.93 -0.41 1.05 16 29 H 0.14 1.89 8.06 -52.49 -0.42 1.47 16 30 H 0.14 1.46 8.06 -52.49 -0.42 1.04 16 31 H 0.20 1.73 8.06 -52.49 -0.42 1.30 16 LS Contribution 247.62 15.07 3.73 3.73 Total: -1.00 -30.76 247.62 -4.93 -35.68 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -3.83 Total: 0.30 kcal Atomic # 6 Polarization: -15.51 SS G_CDS: -0.41 Total: -15.91 kcal Atomic # 7 Polarization: -38.31 SS G_CDS: -0.34 Total: -38.65 kcal Atomic # 8 Polarization: -2.80 SS G_CDS: 0.06 Total: -2.74 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.14 Total: 17.59 kcal Total LS contribution 3.73 Total: 3.73 kcal Total: -30.76 -4.93 -35.68 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048208992.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.455 kcal (2) G-P(sol) polarization free energy of solvation -30.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.927 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.682 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds