Wall clock time and date at job start Sun Mar 29 2020 21:31:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46505 * 109.46999 * 2 1 4 4 C 1.36830 * 119.99913 * 264.55898 * 3 2 1 5 5 H 1.08008 * 120.00264 * 141.01766 * 4 3 2 6 6 C 1.38777 * 120.00205 * 321.01217 * 4 3 2 7 7 N 1.31610 * 119.99856 * 340.58496 * 6 4 3 8 8 Si 1.86803 * 120.00226 * 160.58412 * 6 4 3 9 9 H 1.48499 * 109.47078 * 59.99863 * 8 6 4 10 10 H 1.48494 * 109.47016 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.47044 * 300.00010 * 8 6 4 12 12 C 1.39371 * 119.99828 * 84.55882 * 3 2 1 13 13 C 1.39069 * 120.06436 * 359.71965 * 12 3 2 14 14 C 1.38044 * 119.93390 * 179.78726 * 13 12 3 15 15 C 1.38536 * 120.06173 * 0.47530 * 14 13 12 16 16 F 1.35096 * 119.93495 * 179.76354 * 15 14 13 17 17 C 1.38532 * 120.13265 * 359.77918 * 15 14 13 18 18 C 1.38049 * 120.05923 * 359.97438 * 17 15 14 19 19 H 1.09006 * 109.46963 * 59.99978 * 1 2 3 20 20 H 1.08999 * 109.46953 * 180.02562 * 1 2 3 21 21 H 1.09002 * 109.47378 * 300.00103 * 1 2 3 22 22 H 1.09000 * 109.47031 * 119.99596 * 2 1 3 23 23 H 1.08993 * 109.46968 * 240.00316 * 2 1 3 24 24 H 0.97005 * 119.99757 * 180.02562 * 7 6 4 25 25 H 1.07993 * 120.03535 * 0.02562 * 13 12 3 26 26 H 1.07998 * 119.97115 * 180.23028 * 14 13 12 27 27 H 1.07992 * 119.97132 * 179.97438 * 17 15 14 28 28 H 1.08002 * 120.02882 * 179.97438 * 18 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3523 1.9888 -1.1797 5 1 2.1092 3.0290 -1.3392 6 6 3.0034 1.2686 -2.1712 7 7 3.6350 0.1544 -1.8680 8 14 2.9835 1.8804 -3.9361 9 1 3.6088 3.2257 -4.0007 10 1 3.7449 0.9383 -4.7951 11 1 1.5804 1.9631 -4.4155 12 6 2.1427 2.0764 1.2016 13 6 1.7981 1.4621 2.4007 14 6 1.9265 2.1516 3.5897 15 6 2.3887 3.4576 3.5882 16 9 2.5088 4.1316 4.7528 17 6 2.7277 4.0739 2.3947 18 6 2.6062 3.3875 1.2031 19 1 -0.3633 0.5139 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 -0.3634 0.5138 0.8900 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 4.0905 -0.3489 -2.5611 25 1 1.4340 0.4454 2.4021 26 1 1.6626 1.6739 4.5216 27 1 3.0874 5.0921 2.3965 28 1 2.8703 3.8686 0.2729 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000048353363.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:44 Heat of formation + Delta-G solvation = -29.299893 kcal Electronic energy + Delta-G solvation = -13475.057113 eV Core-core repulsion = 11018.917638 eV Total energy + Delta-G solvation = -2456.139474 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -49.40254 -40.21161 -37.33832 -33.99488 -32.30747 -31.32616 -29.29157 -26.44671 -24.16641 -23.18229 -21.80228 -19.15331 -18.56387 -17.41585 -16.90728 -16.42026 -16.16376 -15.48842 -15.37857 -14.65910 -14.36431 -13.91652 -13.80595 -13.58640 -13.15112 -12.99902 -12.71547 -12.59691 -12.38358 -12.14891 -11.79482 -11.42064 -10.96163 -10.19626 -9.78771 -8.50062 -7.99146 -5.88003 0.63740 0.75948 1.43953 1.46616 1.53227 2.28673 2.84395 3.15870 3.20648 3.79391 4.11484 4.20100 4.34017 4.63642 4.65634 4.73053 4.81503 4.95885 5.14246 5.25441 5.31792 5.42247 5.50426 5.60537 5.63287 5.75405 6.12065 6.36048 6.79034 7.42113 7.79070 8.71103 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.041201 B = 0.009595 C = 0.008342 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 679.430409 B = 2917.492455 C = 3355.560964 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.111 3.889 3 N -0.460 5.460 4 C -0.332 4.332 5 H 0.081 0.919 6 C -0.004 4.004 7 N -0.895 5.895 8 Si 0.981 3.019 9 H -0.268 1.268 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.191 3.809 13 C -0.214 4.214 14 C -0.090 4.090 15 C -0.041 4.041 16 F -0.162 7.162 17 C -0.094 4.094 18 C -0.202 4.202 19 H 0.042 0.958 20 H 0.077 0.923 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.079 0.921 24 H 0.270 0.730 25 H 0.130 0.870 26 H 0.145 0.855 27 H 0.138 0.862 28 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.868 1.085 3.452 5.296 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.012 4.012 3 N -0.148 5.148 4 C -0.461 4.461 5 H 0.099 0.901 6 C -0.206 4.206 7 N -0.532 5.532 8 Si 0.805 3.195 9 H -0.193 1.193 10 H -0.208 1.208 11 H -0.193 1.193 12 C 0.077 3.923 13 C -0.238 4.238 14 C -0.110 4.110 15 C -0.063 4.063 16 F -0.142 7.142 17 C -0.114 4.114 18 C -0.226 4.226 19 H 0.061 0.939 20 H 0.096 0.904 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.097 0.903 24 H 0.079 0.921 25 H 0.148 0.852 26 H 0.162 0.838 27 H 0.155 0.845 28 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -3.773 0.776 3.106 4.948 hybrid contribution 0.297 0.253 -0.731 0.829 sum -3.475 1.029 2.375 4.334 Atomic orbital electron populations 1.22080 0.95789 1.01984 1.01239 1.21422 0.93585 0.83912 1.02306 1.42623 1.58450 1.11644 1.02129 1.19475 1.36615 0.97922 0.92050 0.90095 1.26177 0.93619 0.96877 1.03955 1.70107 1.30539 1.17660 1.34895 0.85169 0.78567 0.78230 0.77529 1.19335 1.20757 1.19308 1.18666 0.93718 0.92803 0.87141 1.20483 1.11863 1.00978 0.90427 1.20867 0.98744 0.92559 0.98797 1.17341 1.14820 0.93020 0.81100 1.91344 1.95308 1.80479 1.47045 1.20872 0.99560 1.00233 0.90720 1.20458 1.09686 0.94670 0.97794 0.93896 0.90392 0.92922 0.92920 0.90305 0.92063 0.85224 0.83764 0.84464 0.86508 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.44 10.11 71.98 0.73 -4.71 15 2 C 0.11 4.85 5.29 86.38 0.46 5.30 15 3 N -0.46 -22.20 2.63 -511.82 -1.35 -23.55 15 4 C -0.33 -16.97 8.42 84.04 0.71 -16.27 15 5 H 0.08 4.09 6.91 -2.91 -0.02 4.07 15 6 C 0.00 -0.20 4.93 84.86 0.42 0.22 15 7 N -0.90 -47.40 11.53 21.64 0.25 -47.15 15 8 Si 0.98 39.92 29.60 68.60 2.03 41.95 15 9 H -0.27 -10.69 7.11 99.48 0.71 -9.98 15 10 H -0.28 -11.32 7.11 99.48 0.71 -10.62 15 11 H -0.27 -10.59 7.11 99.48 0.71 -9.89 15 12 C 0.19 8.65 6.50 38.34 0.25 8.90 15 13 C -0.21 -8.43 8.79 22.42 0.20 -8.23 15 14 C -0.09 -3.25 10.02 22.29 0.22 -3.02 15 15 C -0.04 -1.53 7.30 22.41 0.16 -1.37 15 16 F -0.16 -5.91 17.26 44.97 0.78 -5.13 15 17 C -0.09 -3.62 10.02 22.30 0.22 -3.40 15 18 C -0.20 -8.80 9.26 22.42 0.21 -8.59 15 19 H 0.04 1.61 8.14 -2.38 -0.02 1.59 15 20 H 0.08 2.28 8.14 -2.39 -0.02 2.27 15 21 H 0.05 1.80 7.60 -2.39 -0.02 1.78 15 22 H 0.05 2.18 6.52 -2.39 -0.02 2.16 15 23 H 0.08 3.82 5.63 -2.39 -0.01 3.81 15 24 H 0.27 13.55 8.31 -92.70 -0.77 12.78 15 25 H 0.13 4.69 6.05 -2.91 -0.02 4.68 15 26 H 0.14 4.25 8.06 -2.91 -0.02 4.23 15 27 H 0.14 4.52 8.06 -2.91 -0.02 4.49 15 28 H 0.12 5.21 6.48 -2.91 -0.02 5.19 15 Total: -1.00 -54.95 242.87 6.45 -48.50 By element: Atomic # 1 Polarization: 15.39 SS G_CDS: 1.16 Total: 16.55 kcal Atomic # 6 Polarization: -34.75 SS G_CDS: 3.58 Total: -31.17 kcal Atomic # 7 Polarization: -69.60 SS G_CDS: -1.10 Total: -70.70 kcal Atomic # 9 Polarization: -5.91 SS G_CDS: 0.78 Total: -5.13 kcal Atomic # 14 Polarization: 39.92 SS G_CDS: 2.03 Total: 41.95 kcal Total: -54.95 6.45 -48.50 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000048353363.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.200 kcal (2) G-P(sol) polarization free energy of solvation -54.946 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.446 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.500 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds