Wall clock time and date at job start Sun Mar 29 2020 21:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47331 * 2 1 4 4 C 1.36826 * 119.99734 * 275.24669 * 3 2 1 5 5 H 1.08000 * 120.00822 * 7.08157 * 4 3 2 6 6 C 1.38785 * 119.99492 * 187.09067 * 4 3 2 7 7 N 1.31599 * 120.00526 * 9.75110 * 6 4 3 8 8 Si 1.86802 * 120.00087 * 189.75708 * 6 4 3 9 9 H 1.48506 * 109.46962 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47216 * 119.99579 * 8 6 4 11 11 H 1.48497 * 109.47336 * 239.99828 * 8 6 4 12 12 C 1.39379 * 119.99919 * 95.24084 * 3 2 1 13 13 C 1.39024 * 120.09970 * 90.00263 * 12 3 2 14 14 C 1.38074 * 119.93699 * 180.02562 * 13 12 3 15 15 C 1.38341 * 120.13084 * 0.02562 * 14 13 12 16 16 C 1.38298 * 120.19911 * 359.97438 * 15 14 13 17 17 C 1.38261 * 120.06624 * 0.02562 * 16 15 14 18 18 F 1.35101 * 120.06843 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47025 * 299.99521 * 1 2 3 20 20 H 1.08999 * 109.46982 * 60.00155 * 1 2 3 21 21 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47025 * 240.00479 * 2 1 3 23 23 H 1.08998 * 109.47404 * 120.00491 * 2 1 3 24 24 H 0.96993 * 120.00561 * 180.02562 * 7 6 4 25 25 H 1.08005 * 120.03029 * 0.27598 * 13 12 3 26 26 H 1.08004 * 119.93348 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.89628 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.96994 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1443 2.0623 -1.1800 5 1 1.7778 1.6258 -2.0974 6 6 2.7432 3.3142 -1.1981 7 7 3.3596 3.7643 -0.1261 8 14 2.6743 4.3603 -2.7442 9 1 1.9290 3.6317 -3.8020 10 1 1.9847 5.6410 -2.4450 11 1 4.0547 4.6396 -3.2148 12 6 2.3546 2.0015 1.2020 13 6 3.6521 1.9125 1.6934 14 6 3.9814 2.5278 2.8848 15 6 3.0227 3.2323 3.5908 16 6 1.7303 3.3243 3.1071 17 6 1.3916 2.7114 1.9150 18 9 0.1290 2.8008 1.4426 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.7778 4.6394 -0.1386 25 1 4.4027 1.3660 1.1417 26 1 4.9893 2.4583 3.2667 27 1 3.2843 3.7118 4.5225 28 1 0.9849 3.8756 3.6610 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050011870.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:46 Heat of formation + Delta-G solvation = 3.315864 kcal Electronic energy + Delta-G solvation = -14117.807985 eV Core-core repulsion = 11663.082836 eV Total energy + Delta-G solvation = -2454.725149 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -47.49556 -38.02108 -35.45000 -31.90381 -29.90456 -29.26628 -27.66320 -24.19098 -22.19215 -21.31264 -20.12346 -17.54956 -16.21989 -15.35818 -14.96726 -14.45887 -14.16465 -13.59997 -13.52630 -12.91930 -12.51154 -12.38498 -11.91056 -11.39009 -11.03952 -10.89766 -10.85677 -10.80315 -10.39999 -10.25988 -9.91467 -9.74110 -8.91283 -7.72874 -7.32580 -7.10883 -5.60915 -3.28898 2.51000 2.57020 3.36433 3.43056 3.44927 4.42528 4.86739 5.21329 5.41517 5.63393 5.87124 5.93651 5.99483 6.24644 6.26055 6.35015 6.49854 6.59474 6.77453 6.94428 7.08543 7.21615 7.36054 7.53413 7.65739 7.82302 8.00967 8.30388 9.22274 9.75844 10.13590 11.23164 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.016761 C = 0.013052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.502641 B = 1670.183877 C = 2144.729029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.148 3.852 3 N -0.570 5.570 4 C -0.255 4.255 5 H 0.082 0.918 6 C -0.003 4.003 7 N -0.896 5.896 8 Si 0.911 3.089 9 H -0.279 1.279 10 H -0.289 1.289 11 H -0.290 1.290 12 C 0.261 3.739 13 C -0.053 4.053 14 C -0.136 4.136 15 C -0.131 4.131 16 C -0.165 4.165 17 C 0.066 3.934 18 F -0.151 7.151 19 H 0.050 0.950 20 H 0.053 0.947 21 H 0.039 0.961 22 H 0.052 0.948 23 H 0.043 0.957 24 H 0.256 0.744 25 H 0.108 0.892 26 H 0.103 0.897 27 H 0.106 0.894 28 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.038 -3.898 4.513 6.053 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.023 3.977 3 N -0.288 5.288 4 C -0.383 4.383 5 H 0.100 0.900 6 C -0.201 4.201 7 N -0.540 5.540 8 Si 0.741 3.259 9 H -0.204 1.204 10 H -0.216 1.216 11 H -0.217 1.217 12 C 0.165 3.835 13 C -0.074 4.074 14 C -0.156 4.156 15 C -0.149 4.149 16 C -0.184 4.184 17 C 0.044 3.956 18 F -0.130 7.130 19 H 0.069 0.931 20 H 0.072 0.928 21 H 0.058 0.942 22 H 0.070 0.930 23 H 0.062 0.938 24 H 0.068 0.932 25 H 0.126 0.874 26 H 0.121 0.879 27 H 0.124 0.876 28 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -0.996 -3.753 4.421 5.884 hybrid contribution -0.202 1.046 -0.966 1.438 sum -1.198 -2.707 3.455 4.550 Atomic orbital electron populations 1.22348 0.99047 0.99258 1.02244 1.20818 0.92527 0.84855 0.99473 1.41496 1.75333 1.10134 1.01810 1.19314 1.33820 0.99096 0.86054 0.89974 1.24888 0.99064 0.98326 0.97781 1.69900 1.37877 1.19218 1.27028 0.86067 0.77215 0.80493 0.82126 1.20378 1.21585 1.21698 1.16870 0.90366 0.90747 0.85479 1.21053 0.95329 0.97683 0.93351 1.20677 0.98018 1.00533 0.96356 1.20433 0.92798 1.01758 0.99930 1.20640 0.97553 1.03796 0.96452 1.18459 0.80048 1.02248 0.94816 1.91343 1.37964 1.94906 1.88775 0.93084 0.92785 0.94160 0.93009 0.93845 0.93214 0.87385 0.87866 0.87605 0.87419 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.21 10.21 37.16 0.38 -2.83 15 2 C 0.15 3.06 6.38 -4.04 -0.03 3.03 15 3 N -0.57 -14.27 2.39 -113.08 -0.27 -14.54 15 4 C -0.26 -6.93 9.77 -15.12 -0.15 -7.08 15 5 H 0.08 2.17 7.85 -52.49 -0.41 1.76 15 6 C 0.00 -0.08 5.37 -17.45 -0.09 -0.17 15 7 N -0.90 -25.38 9.50 55.49 0.53 -24.85 15 8 Si 0.91 22.09 29.56 -169.99 -5.03 17.06 15 9 H -0.28 -6.58 7.11 56.52 0.40 -6.18 15 10 H -0.29 -7.18 7.11 56.52 0.40 -6.78 15 11 H -0.29 -7.03 7.11 56.52 0.40 -6.62 15 12 C 0.26 6.47 2.92 -83.75 -0.24 6.22 15 13 C -0.05 -1.23 8.23 -39.35 -0.32 -1.55 15 14 C -0.14 -2.76 10.04 -39.60 -0.40 -3.16 15 15 C -0.13 -2.55 10.04 -39.52 -0.40 -2.95 15 16 C -0.16 -3.51 10.02 -39.55 -0.40 -3.91 15 17 C 0.07 1.62 7.19 -39.19 -0.28 1.34 15 18 F -0.15 -3.79 15.99 2.25 0.04 -3.76 15 19 H 0.05 1.02 7.03 -51.93 -0.36 0.66 15 20 H 0.05 1.08 8.14 -51.93 -0.42 0.66 15 21 H 0.04 0.62 8.14 -51.93 -0.42 0.20 15 22 H 0.05 1.01 8.08 -51.93 -0.42 0.59 15 23 H 0.04 0.82 8.01 -51.93 -0.42 0.41 15 24 H 0.26 7.19 8.31 -40.82 -0.34 6.85 15 25 H 0.11 2.49 8.06 -52.48 -0.42 2.07 15 26 H 0.10 1.79 8.06 -52.48 -0.42 1.37 15 27 H 0.11 1.71 8.06 -52.49 -0.42 1.29 15 28 H 0.11 2.03 8.06 -52.49 -0.42 1.61 15 LS Contribution 246.72 15.07 3.72 3.72 Total: -1.00 -29.32 246.72 -6.23 -35.55 By element: Atomic # 1 Polarization: 1.16 SS G_CDS: -3.28 Total: -2.13 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: -1.93 Total: -11.06 kcal Atomic # 7 Polarization: -39.65 SS G_CDS: 0.26 Total: -39.39 kcal Atomic # 9 Polarization: -3.79 SS G_CDS: 0.04 Total: -3.76 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.03 Total: 17.06 kcal Total LS contribution 3.72 Total: 3.72 kcal Total: -29.32 -6.23 -35.55 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050011870.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.865 kcal (2) G-P(sol) polarization free energy of solvation -29.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.543 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.549 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds