Wall clock time and date at job start Sun Mar 29 2020 21:31:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46506 * 109.47331 * 2 1 4 4 C 1.36826 * 119.99734 * 275.24669 * 3 2 1 5 5 H 1.08000 * 120.00822 * 7.08157 * 4 3 2 6 6 C 1.38785 * 119.99492 * 187.09067 * 4 3 2 7 7 N 1.31599 * 120.00526 * 9.75110 * 6 4 3 8 8 Si 1.86802 * 120.00087 * 189.75708 * 6 4 3 9 9 H 1.48506 * 109.46962 * 359.97438 * 8 6 4 10 10 H 1.48505 * 109.47216 * 119.99579 * 8 6 4 11 11 H 1.48497 * 109.47336 * 239.99828 * 8 6 4 12 12 C 1.39379 * 119.99919 * 95.24084 * 3 2 1 13 13 C 1.39024 * 120.09970 * 90.00263 * 12 3 2 14 14 C 1.38074 * 119.93699 * 180.02562 * 13 12 3 15 15 C 1.38341 * 120.13084 * 0.02562 * 14 13 12 16 16 C 1.38298 * 120.19911 * 359.97438 * 15 14 13 17 17 C 1.38261 * 120.06624 * 0.02562 * 16 15 14 18 18 F 1.35101 * 120.06843 * 179.97438 * 17 16 15 19 19 H 1.09004 * 109.47025 * 299.99521 * 1 2 3 20 20 H 1.08999 * 109.46982 * 60.00155 * 1 2 3 21 21 H 1.09002 * 109.46818 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47025 * 240.00479 * 2 1 3 23 23 H 1.08998 * 109.47404 * 120.00491 * 2 1 3 24 24 H 0.96993 * 120.00561 * 180.02562 * 7 6 4 25 25 H 1.08005 * 120.03029 * 0.27598 * 13 12 3 26 26 H 1.08004 * 119.93348 * 179.97438 * 14 13 12 27 27 H 1.08002 * 119.89628 * 179.97438 * 15 14 13 28 28 H 1.08000 * 119.96994 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1443 2.0623 -1.1800 5 1 1.7778 1.6258 -2.0974 6 6 2.7432 3.3142 -1.1981 7 7 3.3596 3.7643 -0.1261 8 14 2.6743 4.3603 -2.7442 9 1 1.9290 3.6317 -3.8020 10 1 1.9847 5.6410 -2.4450 11 1 4.0547 4.6396 -3.2148 12 6 2.3546 2.0015 1.2020 13 6 3.6521 1.9125 1.6934 14 6 3.9814 2.5278 2.8848 15 6 3.0227 3.2323 3.5908 16 6 1.7303 3.3243 3.1071 17 6 1.3916 2.7114 1.9150 18 9 0.1290 2.8008 1.4426 19 1 -0.3633 0.5138 0.8901 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5139 0.8899 24 1 3.7778 4.6394 -0.1386 25 1 4.4027 1.3660 1.1417 26 1 4.9893 2.4583 3.2667 27 1 3.2843 3.7118 4.5225 28 1 0.9849 3.8756 3.6610 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050011870.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:46 Heat of formation + Delta-G solvation = -12.123514 kcal Electronic energy + Delta-G solvation = -14118.477486 eV Core-core repulsion = 11663.082836 eV Total energy + Delta-G solvation = -2455.394651 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.091 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -49.35182 -39.74872 -37.19205 -33.82241 -31.61419 -30.95226 -29.46198 -26.10794 -23.85249 -23.01548 -21.90138 -19.42800 -17.97389 -17.19714 -16.72977 -16.33102 -16.05399 -15.40848 -15.22780 -14.61252 -14.21781 -14.12455 -13.55659 -13.20087 -12.84564 -12.77522 -12.55562 -12.46605 -12.22294 -12.00959 -11.70308 -11.51449 -10.89801 -9.45877 -9.09655 -9.00494 -7.61138 -5.33394 0.79104 0.90185 1.43045 1.45734 1.53780 2.46825 3.14695 3.34190 3.48615 3.94249 4.27364 4.33467 4.44313 4.65356 4.72385 4.78789 4.91819 4.97380 5.17102 5.30009 5.50452 5.53630 5.56490 5.68920 5.87109 6.10151 6.17233 6.46369 7.19965 7.86826 8.16414 9.15814 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.025717 B = 0.016761 C = 0.013052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1088.502641 B = 1670.183877 C = 2144.729029 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.141 3.859 3 N -0.586 5.586 4 C -0.263 4.263 5 H 0.081 0.919 6 C -0.052 4.052 7 N -0.912 5.912 8 Si 0.966 3.034 9 H -0.270 1.270 10 H -0.299 1.299 11 H -0.289 1.289 12 C 0.238 3.762 13 C -0.071 4.071 14 C -0.130 4.130 15 C -0.121 4.121 16 C -0.167 4.167 17 C 0.032 3.968 18 F -0.165 7.165 19 H 0.034 0.966 20 H 0.036 0.964 21 H 0.077 0.923 22 H 0.059 0.941 23 H 0.057 0.943 24 H 0.247 0.753 25 H 0.097 0.903 26 H 0.137 0.863 27 H 0.149 0.851 28 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.709 -3.923 5.451 6.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.017 3.983 3 N -0.304 5.304 4 C -0.391 4.391 5 H 0.099 0.901 6 C -0.247 4.247 7 N -0.557 5.557 8 Si 0.795 3.205 9 H -0.195 1.195 10 H -0.226 1.226 11 H -0.216 1.216 12 C 0.143 3.857 13 C -0.092 4.092 14 C -0.149 4.149 15 C -0.139 4.139 16 C -0.186 4.186 17 C 0.010 3.990 18 F -0.144 7.144 19 H 0.053 0.947 20 H 0.055 0.945 21 H 0.096 0.904 22 H 0.077 0.923 23 H 0.075 0.925 24 H 0.058 0.942 25 H 0.115 0.885 26 H 0.154 0.846 27 H 0.167 0.833 28 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.678 -3.812 5.366 6.617 hybrid contribution -0.293 1.000 -1.182 1.576 sum -0.971 -2.812 4.183 5.133 Atomic orbital electron populations 1.22199 0.97732 1.01141 1.00552 1.21036 0.93498 0.83332 1.00451 1.41728 1.75775 1.11428 1.01504 1.19548 1.33065 0.99528 0.86987 0.90122 1.25538 0.99543 0.99415 1.00232 1.70106 1.38633 1.18745 1.28234 0.85205 0.76955 0.78556 0.79768 1.19459 1.22633 1.21575 1.17131 0.91202 0.91676 0.85734 1.21093 0.94500 0.98794 0.94766 1.21073 0.99817 0.98903 0.95093 1.20914 0.91590 1.00438 1.00974 1.21010 0.99062 1.03048 0.95529 1.18828 0.79761 1.03960 0.96476 1.91294 1.38748 1.95172 1.89188 0.94655 0.94463 0.90420 0.92291 0.92476 0.94211 0.88471 0.84564 0.83287 0.85166 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.83 10.21 71.98 0.73 -5.10 15 2 C 0.14 5.75 6.38 86.38 0.55 6.30 15 3 N -0.59 -29.52 2.39 -511.66 -1.22 -30.74 15 4 C -0.26 -14.39 9.77 84.04 0.82 -13.57 15 5 H 0.08 4.29 7.85 -2.91 -0.02 4.27 15 6 C -0.05 -2.87 5.37 84.86 0.46 -2.42 15 7 N -0.91 -51.85 9.50 21.65 0.21 -51.65 15 8 Si 0.97 45.74 29.56 68.60 2.03 47.77 15 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 15 10 H -0.30 -14.52 7.11 99.48 0.71 -13.81 15 11 H -0.29 -13.49 7.11 99.48 0.71 -12.79 15 12 C 0.24 11.78 2.92 38.38 0.11 11.89 15 13 C -0.07 -3.22 8.23 22.42 0.18 -3.04 15 14 C -0.13 -4.93 10.04 22.26 0.22 -4.70 15 15 C -0.12 -4.32 10.04 22.31 0.22 -4.10 15 16 C -0.17 -6.80 10.02 22.29 0.22 -6.58 15 17 C 0.03 1.53 7.19 22.52 0.16 1.69 15 18 F -0.16 -8.38 15.99 44.97 0.72 -7.66 15 19 H 0.03 1.40 7.03 -2.39 -0.02 1.38 15 20 H 0.04 1.47 8.14 -2.39 -0.02 1.45 15 21 H 0.08 2.26 8.14 -2.39 -0.02 2.24 15 22 H 0.06 2.27 8.08 -2.39 -0.02 2.25 15 23 H 0.06 2.13 8.01 -2.39 -0.02 2.11 15 24 H 0.25 13.94 8.31 -92.71 -0.77 13.17 15 25 H 0.10 4.51 8.06 -2.91 -0.02 4.49 15 26 H 0.14 4.21 8.06 -2.91 -0.02 4.19 15 27 H 0.15 4.04 8.06 -2.91 -0.02 4.01 15 28 H 0.13 4.59 8.06 -2.91 -0.02 4.57 15 Total: -1.00 -62.43 246.72 6.56 -55.87 By element: Atomic # 1 Polarization: 4.89 SS G_CDS: 1.14 Total: 6.03 kcal Atomic # 6 Polarization: -23.31 SS G_CDS: 3.69 Total: -19.62 kcal Atomic # 7 Polarization: -81.37 SS G_CDS: -1.02 Total: -82.39 kcal Atomic # 9 Polarization: -8.38 SS G_CDS: 0.72 Total: -7.66 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -62.43 6.56 -55.87 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050011870.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.744 kcal (2) G-P(sol) polarization free energy of solvation -62.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.687 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.867 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.124 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds