Wall clock time and date at job start Sun Mar 29 2020 21:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.47227 * 2 1 4 4 C 1.34947 * 126.03548 * 124.97094 * 3 2 1 5 5 C 1.35315 * 107.74500 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.03894 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47104 * 269.97155 * 6 5 4 8 8 C 1.46503 * 120.00107 * 270.00006 * 7 6 5 9 9 C 1.36937 * 120.00073 * 90.00064 * 7 6 5 10 10 H 1.07999 * 119.99803 * 20.37896 * 9 7 6 11 11 C 1.38812 * 119.99912 * 200.37653 * 9 7 6 12 12 N 1.31613 * 120.00225 * 14.98181 * 11 9 7 13 13 Si 1.86807 * 119.99832 * 194.97548 * 11 9 7 14 14 H 1.48494 * 109.46924 * 85.00635 * 13 11 9 15 15 H 1.48501 * 109.46864 * 205.00459 * 13 11 9 16 16 H 1.48500 * 109.47167 * 325.00572 * 13 11 9 17 17 C 1.39876 * 107.91751 * 0.02562 * 5 4 3 18 18 N 1.30830 * 108.20213 * 359.97438 * 17 5 4 19 19 H 1.08998 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47153 * 300.00029 * 1 2 3 21 21 H 1.08996 * 109.46894 * 59.99590 * 1 2 3 22 22 H 1.08995 * 109.47416 * 240.00187 * 2 1 3 23 23 H 1.08997 * 109.47499 * 119.99954 * 2 1 3 24 24 H 1.07999 * 126.12542 * 0.02562 * 4 3 2 25 25 H 1.09001 * 109.47632 * 29.96878 * 6 5 4 26 26 H 1.08999 * 109.47105 * 149.97545 * 6 5 4 27 27 H 1.09002 * 109.46839 * 95.09437 * 8 7 6 28 28 H 1.09001 * 109.47147 * 215.09314 * 8 7 6 29 29 H 1.08995 * 109.47131 * 335.09608 * 8 7 6 30 30 H 0.97003 * 120.00382 * 179.97438 * 12 11 9 31 31 H 1.08004 * 125.89206 * 180.26545 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8727 1.9213 0.8942 5 6 3.0711 3.2139 0.5466 6 6 3.9543 4.2001 1.2664 7 7 3.1736 4.8970 2.2917 8 6 2.4728 6.1399 1.9599 9 6 3.0990 4.3866 3.5602 10 1 3.8454 3.6863 3.9052 11 6 2.0642 4.7693 4.4026 12 7 1.0051 5.3761 3.9103 13 14 2.1748 4.4228 6.2349 14 1 2.9299 5.5146 6.9004 15 1 0.8068 4.3465 6.8076 16 1 2.8755 3.1318 6.4532 17 6 2.3115 3.4728 -0.5991 18 7 1.6802 2.3749 -0.9276 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 3.3183 1.4128 1.7364 25 1 4.7820 3.6701 1.7378 26 1 4.3462 4.9250 0.5530 27 1 1.4388 5.9152 1.6979 28 1 2.4924 6.8089 2.8202 29 1 2.9655 6.6204 1.1147 30 1 0.2818 5.6432 4.4989 31 1 2.2592 4.4149 -1.1246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000050539874.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:56 Heat of formation + Delta-G solvation = 100.784345 kcal Electronic energy + Delta-G solvation = -13786.561786 eV Core-core repulsion = 11491.816243 eV Total energy + Delta-G solvation = -2294.745542 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -40.43659 -35.52172 -33.94909 -31.43900 -29.74359 -29.02708 -25.82013 -25.18174 -23.34177 -21.24118 -20.02349 -19.26063 -16.70135 -16.22002 -15.04115 -14.72701 -13.84879 -13.64746 -13.41957 -13.24050 -12.90279 -12.17611 -12.10891 -11.85923 -11.46327 -11.13939 -11.08229 -10.81767 -10.58020 -10.23739 -10.01410 -9.87259 -9.68200 -8.72251 -8.46503 -7.61952 -6.66874 -5.63745 -3.05732 2.58846 3.09998 3.41129 3.46570 3.48508 3.62599 4.58397 4.81091 5.14885 5.30219 5.48069 5.51425 5.62966 5.72148 5.89155 5.92671 6.19706 6.21091 6.38278 6.56747 6.80435 6.89789 7.03518 7.39439 7.48312 7.72441 7.82703 7.89608 8.39282 8.47961 9.32382 9.97707 10.46813 11.41109 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.009898 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.828935 B = 2828.132959 C = 3275.878696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.137 3.863 3 N -0.384 5.384 4 C 0.055 3.945 5 C -0.226 4.226 6 C 0.217 3.783 7 N -0.595 5.595 8 C 0.165 3.835 9 C -0.247 4.247 10 H 0.068 0.932 11 C -0.001 4.001 12 N -0.906 5.906 13 Si 0.901 3.099 14 H -0.288 1.288 15 H -0.293 1.293 16 H -0.281 1.281 17 C 0.052 3.948 18 N -0.313 5.313 19 H 0.067 0.933 20 H 0.062 0.938 21 H 0.067 0.933 22 H 0.074 0.926 23 H 0.089 0.911 24 H 0.163 0.837 25 H 0.048 0.952 26 H 0.045 0.955 27 H 0.027 0.973 28 H 0.041 0.959 29 H -0.002 1.002 30 H 0.250 0.750 31 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.585 -7.780 -6.596 10.522 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.015 3.985 3 N -0.169 5.169 4 C -0.090 4.090 5 C -0.239 4.239 6 C 0.089 3.911 7 N -0.316 5.316 8 C 0.020 3.980 9 C -0.377 4.377 10 H 0.086 0.914 11 C -0.199 4.199 12 N -0.551 5.551 13 Si 0.731 3.269 14 H -0.215 1.215 15 H -0.219 1.219 16 H -0.207 1.207 17 C -0.134 4.134 18 N -0.135 5.135 19 H 0.086 0.914 20 H 0.081 0.919 21 H 0.086 0.914 22 H 0.092 0.908 23 H 0.107 0.893 24 H 0.180 0.820 25 H 0.066 0.934 26 H 0.064 0.936 27 H 0.045 0.955 28 H 0.060 0.940 29 H 0.016 0.984 30 H 0.061 0.939 31 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.592 -8.382 -7.305 11.232 hybrid contribution 0.204 0.113 1.743 1.759 sum 1.797 -8.269 -5.562 10.126 Atomic orbital electron populations 1.22044 0.94409 1.02049 1.03725 1.21472 0.95696 0.78610 1.02717 1.48502 1.36759 1.09514 1.22088 1.22206 0.95939 0.95277 0.95571 1.21395 1.08304 0.95207 0.99040 1.19232 0.91404 0.90988 0.89496 1.44131 1.58071 1.22839 1.06596 1.20763 0.94838 0.86616 0.95768 1.19195 1.06058 1.24362 0.88039 0.91418 1.24971 0.95189 1.01366 0.98418 1.70097 1.06793 1.44999 1.33225 0.86329 0.76596 0.77971 0.85978 1.21516 1.21949 1.20710 1.23610 0.96109 0.96687 0.96989 1.77084 1.24133 0.97426 1.14852 0.91404 0.91905 0.91377 0.90753 0.89295 0.81965 0.93380 0.93620 0.95477 0.94023 0.98361 0.93940 0.81163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.10 10.10 37.16 0.38 -1.73 16 2 C 0.14 1.80 7.23 -4.04 -0.03 1.77 16 3 N -0.38 -6.90 3.68 -61.36 -0.23 -7.13 16 4 C 0.06 1.06 11.36 -17.22 -0.20 0.86 16 5 C -0.23 -4.63 5.68 -105.05 -0.60 -5.23 16 6 C 0.22 4.57 6.19 -5.20 -0.03 4.53 16 7 N -0.59 -15.21 2.91 -182.50 -0.53 -15.75 16 8 C 0.16 4.18 9.02 59.85 0.54 4.72 16 9 C -0.25 -6.82 9.68 -15.06 -0.15 -6.96 16 10 H 0.07 1.81 7.86 -52.49 -0.41 1.40 16 11 C 0.00 -0.04 5.06 -17.43 -0.09 -0.13 16 12 N -0.91 -27.11 10.67 55.49 0.59 -26.52 16 13 Si 0.90 22.11 29.58 -169.99 -5.03 17.08 16 14 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 15 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 16 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 17 C 0.05 1.04 11.96 -17.37 -0.21 0.83 16 18 N -0.31 -6.20 12.42 30.63 0.38 -5.82 16 19 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 20 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 21 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 22 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 23 H 0.09 0.97 8.07 -51.93 -0.42 0.55 16 24 H 0.16 2.78 8.06 -52.49 -0.42 2.36 16 25 H 0.05 0.96 8.03 -51.93 -0.42 0.54 16 26 H 0.05 0.87 7.86 -51.93 -0.41 0.46 16 27 H 0.03 0.75 7.40 -51.93 -0.38 0.37 16 28 H 0.04 1.12 7.21 -51.93 -0.37 0.75 16 29 H 0.00 -0.05 7.83 -51.93 -0.41 -0.45 16 30 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 31 H 0.17 2.96 8.06 -52.48 -0.42 2.54 16 LS Contribution 268.11 15.07 4.04 4.04 Total: -1.00 -32.46 268.11 -5.65 -38.10 By element: Atomic # 1 Polarization: 1.82 SS G_CDS: -4.49 Total: -2.68 kcal Atomic # 6 Polarization: -0.95 SS G_CDS: -0.38 Total: -1.33 kcal Atomic # 7 Polarization: -55.43 SS G_CDS: 0.22 Total: -55.21 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 4.04 Total: 4.04 kcal Total: -32.46 -5.65 -38.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050539874.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.886 kcal (2) G-P(sol) polarization free energy of solvation -32.455 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 106.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.102 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.784 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds