Wall clock time and date at job start Sun Mar 29 2020 21:59:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46510 * 109.47227 * 2 1 4 4 C 1.34947 * 126.03548 * 124.97094 * 3 2 1 5 5 C 1.35315 * 107.74500 * 180.02562 * 4 3 2 6 6 C 1.50694 * 126.03894 * 180.02562 * 5 4 3 7 7 N 1.46500 * 109.47104 * 269.97155 * 6 5 4 8 8 C 1.46503 * 120.00107 * 270.00006 * 7 6 5 9 9 C 1.36937 * 120.00073 * 90.00064 * 7 6 5 10 10 H 1.07999 * 119.99803 * 20.37896 * 9 7 6 11 11 C 1.38812 * 119.99912 * 200.37653 * 9 7 6 12 12 N 1.31613 * 120.00225 * 14.98181 * 11 9 7 13 13 Si 1.86807 * 119.99832 * 194.97548 * 11 9 7 14 14 H 1.48494 * 109.46924 * 85.00635 * 13 11 9 15 15 H 1.48501 * 109.46864 * 205.00459 * 13 11 9 16 16 H 1.48500 * 109.47167 * 325.00572 * 13 11 9 17 17 C 1.39876 * 107.91751 * 0.02562 * 5 4 3 18 18 N 1.30830 * 108.20213 * 359.97438 * 17 5 4 19 19 H 1.08998 * 109.47037 * 179.97438 * 1 2 3 20 20 H 1.09003 * 109.47153 * 300.00029 * 1 2 3 21 21 H 1.08996 * 109.46894 * 59.99590 * 1 2 3 22 22 H 1.08995 * 109.47416 * 240.00187 * 2 1 3 23 23 H 1.08997 * 109.47499 * 119.99954 * 2 1 3 24 24 H 1.07999 * 126.12542 * 0.02562 * 4 3 2 25 25 H 1.09001 * 109.47632 * 29.96878 * 6 5 4 26 26 H 1.08999 * 109.47105 * 149.97545 * 6 5 4 27 27 H 1.09002 * 109.46839 * 95.09437 * 8 7 6 28 28 H 1.09001 * 109.47147 * 215.09314 * 8 7 6 29 29 H 1.08995 * 109.47131 * 335.09608 * 8 7 6 30 30 H 0.97003 * 120.00382 * 179.97438 * 12 11 9 31 31 H 1.08004 * 125.89206 * 180.26545 * 17 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.8727 1.9213 0.8942 5 6 3.0711 3.2139 0.5466 6 6 3.9543 4.2001 1.2664 7 7 3.1736 4.8970 2.2917 8 6 2.4728 6.1399 1.9599 9 6 3.0990 4.3866 3.5602 10 1 3.8454 3.6863 3.9052 11 6 2.0642 4.7693 4.4026 12 7 1.0051 5.3761 3.9103 13 14 2.1748 4.4228 6.2349 14 1 2.9299 5.5146 6.9004 15 1 0.8068 4.3465 6.8076 16 1 2.8755 3.1318 6.4532 17 6 2.3115 3.4728 -0.5991 18 7 1.6802 2.3749 -0.9276 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5139 -0.8899 22 1 1.8934 -0.5138 -0.8899 23 1 1.8934 -0.5138 0.8899 24 1 3.3183 1.4128 1.7364 25 1 4.7820 3.6701 1.7378 26 1 4.3462 4.9250 0.5530 27 1 1.4388 5.9152 1.6979 28 1 2.4924 6.8089 2.8202 29 1 2.9655 6.6204 1.1147 30 1 0.2818 5.6432 4.4989 31 1 2.2592 4.4149 -1.1246 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050539874.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:56 Heat of formation + Delta-G solvation = 80.459275 kcal Electronic energy + Delta-G solvation = -13787.443147 eV Core-core repulsion = 11491.816243 eV Total energy + Delta-G solvation = -2295.626904 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.89122 -37.40130 -35.24144 -33.37055 -31.24968 -30.55371 -27.86845 -26.87523 -24.61281 -23.12112 -21.41654 -20.79489 -18.65132 -17.70922 -16.72286 -16.26115 -15.49765 -15.15637 -15.05271 -14.94765 -14.48911 -13.74656 -13.56018 -13.03846 -12.97792 -12.94437 -12.77482 -12.46839 -12.27404 -12.07403 -11.90543 -11.86460 -11.28415 -10.57734 -10.15828 -9.15800 -8.70470 -7.75296 -5.19504 1.12627 1.47535 1.50029 1.57153 1.82456 2.06089 2.57993 3.38841 3.70191 3.99782 4.10048 4.14956 4.25813 4.38502 4.62775 4.67027 4.80974 4.89368 4.96454 5.02084 5.18203 5.25670 5.41191 5.49300 5.69018 5.78785 5.91846 6.35058 6.39138 6.91311 7.22187 7.96985 8.40995 9.28450 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.031006 B = 0.009898 C = 0.008545 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 902.828935 B = 2828.132959 C = 3275.878696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.124 3.876 3 N -0.381 5.381 4 C 0.054 3.946 5 C -0.252 4.252 6 C 0.218 3.782 7 N -0.610 5.610 8 C 0.180 3.820 9 C -0.247 4.247 10 H 0.077 0.923 11 C -0.060 4.060 12 N -0.942 5.942 13 Si 0.964 3.036 14 H -0.287 1.287 15 H -0.302 1.302 16 H -0.265 1.265 17 C 0.040 3.960 18 N -0.332 5.332 19 H 0.105 0.895 20 H 0.036 0.964 21 H 0.050 0.950 22 H 0.098 0.902 23 H 0.116 0.884 24 H 0.182 0.818 25 H 0.059 0.941 26 H 0.065 0.935 27 H -0.006 1.006 28 H 0.014 0.986 29 H 0.033 0.967 30 H 0.243 0.757 31 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.580 -9.448 -6.632 12.086 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.004 3.996 3 N -0.165 5.165 4 C -0.093 4.093 5 C -0.265 4.265 6 C 0.091 3.909 7 N -0.332 5.332 8 C 0.035 3.965 9 C -0.378 4.378 10 H 0.095 0.905 11 C -0.255 4.255 12 N -0.590 5.590 13 Si 0.793 3.207 14 H -0.214 1.214 15 H -0.230 1.230 16 H -0.190 1.190 17 C -0.145 4.145 18 N -0.154 5.154 19 H 0.124 0.876 20 H 0.055 0.945 21 H 0.070 0.930 22 H 0.116 0.884 23 H 0.134 0.866 24 H 0.199 0.801 25 H 0.077 0.923 26 H 0.084 0.916 27 H 0.013 0.987 28 H 0.033 0.967 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges 2.615 -10.091 -7.373 12.768 hybrid contribution -0.063 0.541 1.660 1.747 sum 2.551 -9.550 -5.714 11.417 Atomic orbital electron populations 1.22005 0.94242 1.03841 1.01523 1.21958 0.95858 0.76504 1.05250 1.48902 1.35832 1.10722 1.21037 1.22555 0.95666 0.95264 0.95808 1.21353 1.09278 0.95944 0.99959 1.19337 0.90991 0.91526 0.89023 1.44374 1.58128 1.23392 1.07338 1.20484 0.93662 0.86660 0.95727 1.19583 1.05605 1.23439 0.89144 0.90527 1.25729 0.95153 1.02154 1.02420 1.70288 1.07554 1.46997 1.34172 0.85317 0.75967 0.78356 0.81050 1.21380 1.22952 1.18999 1.23903 0.96018 0.97424 0.97193 1.77032 1.24575 0.97984 1.15844 0.87643 0.94509 0.93045 0.88368 0.86611 0.80098 0.92303 0.91644 0.98737 0.96702 0.94823 0.94818 0.79799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.74 10.10 71.98 0.73 -3.01 16 2 C 0.12 2.91 7.23 86.38 0.62 3.53 16 3 N -0.38 -12.99 3.68 -348.05 -1.28 -14.27 16 4 C 0.05 1.96 11.36 83.54 0.95 2.90 16 5 C -0.25 -9.99 5.68 -20.14 -0.11 -10.11 16 6 C 0.22 8.80 6.19 85.63 0.53 9.33 16 7 N -0.61 -30.75 2.91 -731.31 -2.13 -32.88 16 8 C 0.18 9.15 9.02 127.77 1.15 10.31 16 9 C -0.25 -13.46 9.68 84.03 0.81 -12.65 16 10 H 0.08 3.95 7.86 -2.91 -0.02 3.93 16 11 C -0.06 -3.43 5.06 84.86 0.43 -3.00 16 12 N -0.94 -57.51 10.67 21.65 0.23 -57.28 16 13 Si 0.96 45.43 29.58 68.60 2.03 47.46 16 14 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 15 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 16 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 17 C 0.04 1.55 11.96 85.24 1.02 2.57 16 18 N -0.33 -12.81 12.42 -57.02 -0.71 -13.51 16 19 H 0.10 1.68 8.14 -2.39 -0.02 1.66 16 20 H 0.04 1.05 8.14 -2.39 -0.02 1.03 16 21 H 0.05 1.38 8.14 -2.39 -0.02 1.36 16 22 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 23 H 0.12 2.11 8.07 -2.39 -0.02 2.09 16 24 H 0.18 5.74 8.06 -2.91 -0.02 5.72 16 25 H 0.06 2.22 8.03 -2.39 -0.02 2.20 16 26 H 0.07 2.35 7.86 -2.39 -0.02 2.33 16 27 H -0.01 -0.33 7.40 -2.39 -0.02 -0.34 16 28 H 0.01 0.79 7.21 -2.39 -0.02 0.78 16 29 H 0.03 1.43 7.83 -2.39 -0.02 1.41 16 30 H 0.24 14.52 8.31 -92.71 -0.77 13.75 16 31 H 0.19 6.27 8.06 -2.91 -0.02 6.25 16 Total: -1.00 -69.40 268.11 5.37 -64.04 By element: Atomic # 1 Polarization: 5.46 SS G_CDS: 1.09 Total: 6.56 kcal Atomic # 6 Polarization: -6.25 SS G_CDS: 6.13 Total: -0.12 kcal Atomic # 7 Polarization: -114.05 SS G_CDS: -3.89 Total: -117.94 kcal Atomic # 14 Polarization: 45.43 SS G_CDS: 2.03 Total: 47.46 kcal Total: -69.40 5.37 -64.04 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050539874.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 144.497 kcal (2) G-P(sol) polarization free energy of solvation -69.404 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 75.093 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.459 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds