Wall clock time and date at job start Sun Mar 29 2020 22:00:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46506 * 109.47109 * 2 1 4 4 C 1.36942 * 119.99575 * 84.45802 * 3 2 1 5 5 H 1.07997 * 120.00268 * 321.40840 * 4 3 2 6 6 C 1.38812 * 119.99493 * 141.41235 * 4 3 2 7 7 N 1.31618 * 120.00038 * 160.48511 * 6 4 3 8 8 Si 1.86801 * 120.00131 * 340.49268 * 6 4 3 9 9 H 1.48497 * 109.47111 * 95.00992 * 8 6 4 10 10 H 1.48503 * 109.46947 * 215.00755 * 8 6 4 11 11 H 1.48500 * 109.47075 * 335.00615 * 8 6 4 12 12 C 1.46490 * 120.00131 * 264.46007 * 3 2 1 13 13 C 1.50703 * 109.47289 * 89.99799 * 12 3 2 14 14 C 1.39866 * 126.03883 * 90.02435 * 13 12 3 15 15 N 1.30837 * 108.20491 * 179.97438 * 14 13 12 16 16 N 1.40088 * 108.20295 * 359.97438 * 15 14 13 17 17 C 1.46502 * 126.03593 * 179.97438 * 16 15 14 18 18 C 1.34946 * 107.92498 * 359.76421 * 16 15 14 19 19 H 1.08997 * 109.47240 * 176.80029 * 1 2 3 20 20 H 1.09003 * 109.47382 * 296.79678 * 1 2 3 21 21 H 1.09000 * 109.47172 * 56.79805 * 1 2 3 22 22 H 1.08997 * 109.47120 * 119.99751 * 2 1 3 23 23 H 1.08997 * 109.47289 * 240.00219 * 2 1 3 24 24 H 0.96996 * 120.00361 * 180.02562 * 7 6 4 25 25 H 1.08996 * 109.47420 * 209.99856 * 12 3 2 26 26 H 1.09004 * 109.47058 * 329.99808 * 12 3 2 27 27 H 1.07998 * 125.89920 * 0.02562 * 14 13 12 28 28 H 1.08998 * 109.46941 * 89.98424 * 17 16 15 29 29 H 1.09002 * 109.46921 * 209.97923 * 17 16 15 30 30 H 1.09003 * 109.47087 * 329.97527 * 17 16 15 31 31 H 1.08005 * 126.12918 * 180.23520 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1385 2.0649 1.1805 5 1 1.3942 1.9429 1.9534 6 6 3.2172 2.9148 1.3835 7 7 3.1556 3.8461 2.3114 8 14 4.7560 2.7367 0.3395 9 1 4.6867 3.6761 -0.8085 10 1 5.9516 3.0489 1.1631 11 1 4.8529 1.3437 -0.1658 12 6 2.3779 2.0310 -1.2627 13 6 1.1680 2.7252 -1.8329 14 6 0.7825 4.0461 -1.5818 15 7 -0.3147 4.2863 -2.2528 16 7 -0.6623 3.1242 -2.9537 17 6 -1.8257 2.9613 -3.8291 18 6 0.2662 2.1829 -2.6837 19 1 -0.3633 -1.0260 -0.0574 20 1 -0.3634 0.4633 0.9173 21 1 -0.3633 0.5627 -0.8599 22 1 1.8933 -0.5138 0.8900 23 1 1.8933 -0.5138 -0.8900 24 1 3.9091 4.4402 2.4531 25 1 3.1657 2.7627 -1.0834 26 1 2.7330 1.2807 -1.9692 27 1 1.3014 4.7469 -0.9448 28 1 -1.5550 3.2375 -4.8482 29 1 -2.1525 1.9216 -3.8092 30 1 -2.6350 3.6032 -3.4812 31 1 0.2846 1.1761 -3.0742 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000050539875.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:15 Heat of formation + Delta-G solvation = 84.182739 kcal Electronic energy + Delta-G solvation = -14100.456561 eV Core-core repulsion = 11804.991119 eV Total energy + Delta-G solvation = -2295.465442 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.96208 -37.89475 -34.13510 -33.90060 -32.08743 -30.70475 -28.21817 -26.40451 -25.07471 -22.13775 -21.84411 -21.24069 -18.70465 -17.72246 -16.97429 -16.24375 -15.84602 -15.25067 -15.07160 -14.84173 -14.22640 -14.10061 -13.65088 -13.58812 -13.31003 -13.19736 -12.77845 -12.56245 -12.31606 -11.91177 -11.61183 -11.58477 -11.24862 -10.56463 -10.19122 -9.17317 -8.63320 -8.10176 -5.50655 1.05433 1.38273 1.47005 1.58947 1.83951 1.95098 2.49956 3.19683 3.62843 3.77612 4.09067 4.38734 4.43467 4.49409 4.50192 4.71191 4.72454 4.83944 4.87114 4.92456 5.08655 5.15147 5.30483 5.36278 5.61603 5.76820 6.04319 6.26190 6.33962 6.84150 7.11078 7.74974 8.16440 9.09769 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032880 B = 0.012011 C = 0.010435 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 851.382209 B = 2330.554463 C = 2682.741535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.139 3.861 3 N -0.611 5.611 4 C -0.245 4.245 5 H 0.027 0.973 6 C -0.022 4.022 7 N -0.956 5.956 8 Si 0.949 3.051 9 H -0.276 1.276 10 H -0.314 1.314 11 H -0.250 1.250 12 C 0.203 3.797 13 C -0.249 4.249 14 C 0.043 3.957 15 N -0.338 5.338 16 N -0.381 5.381 17 C 0.096 3.904 18 C 0.067 3.933 19 H 0.071 0.929 20 H 0.014 0.986 21 H 0.051 0.949 22 H 0.038 0.962 23 H 0.075 0.925 24 H 0.260 0.740 25 H 0.033 0.967 26 H 0.080 0.920 27 H 0.154 0.846 28 H 0.089 0.911 29 H 0.115 0.885 30 H 0.084 0.916 31 H 0.208 0.792 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.146 -7.470 -14.721 17.615 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.015 3.985 3 N -0.334 5.334 4 C -0.375 4.375 5 H 0.045 0.955 6 C -0.218 4.218 7 N -0.600 5.600 8 Si 0.778 3.222 9 H -0.203 1.203 10 H -0.243 1.243 11 H -0.174 1.174 12 C 0.077 3.923 13 C -0.263 4.263 14 C -0.142 4.142 15 N -0.161 5.161 16 N -0.165 5.165 17 C -0.044 4.044 18 C -0.080 4.080 19 H 0.090 0.910 20 H 0.033 0.967 21 H 0.070 0.930 22 H 0.057 0.943 23 H 0.093 0.907 24 H 0.069 0.931 25 H 0.051 0.949 26 H 0.098 0.902 27 H 0.171 0.829 28 H 0.107 0.893 29 H 0.133 0.867 30 H 0.102 0.898 31 H 0.225 0.775 Dipole moment (debyes) X Y Z Total from point charges -7.101 -6.549 -15.026 17.863 hybrid contribution 1.262 0.149 0.651 1.428 sum -5.840 -6.401 -14.374 16.783 Atomic orbital electron populations 1.22173 0.98376 1.00730 1.00089 1.21030 0.93109 0.84157 1.00245 1.44302 1.77428 1.10369 1.01304 1.18495 1.03461 1.21442 0.94084 0.95523 1.26083 1.00552 0.96986 0.98146 1.70002 1.32149 1.19716 1.38183 0.85760 0.79272 0.79581 0.77562 1.20313 1.24338 1.17399 1.19585 0.91348 0.94743 0.86624 1.21063 1.04663 0.95026 1.05530 1.23632 0.94491 0.97709 0.98324 1.77169 1.17075 1.08011 1.13863 1.48802 1.22110 1.08300 1.37256 1.22160 0.84427 1.05192 0.92593 1.22621 0.89914 0.96507 0.98947 0.90967 0.96685 0.93045 0.94341 0.90721 0.93087 0.94867 0.90157 0.82874 0.89266 0.86672 0.89758 0.77518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.16 10.21 71.98 0.73 -4.43 16 2 C 0.14 5.14 6.44 86.38 0.56 5.70 16 3 N -0.61 -28.19 2.07 -706.36 -1.46 -29.65 16 4 C -0.24 -14.04 9.93 84.03 0.83 -13.20 16 5 H 0.03 1.75 8.06 -2.91 -0.02 1.73 16 6 C -0.02 -1.31 5.35 84.86 0.45 -0.85 16 7 N -0.96 -60.95 13.97 21.65 0.30 -60.65 16 8 Si 0.95 46.48 24.90 68.60 1.71 48.19 16 9 H -0.28 -12.99 6.69 99.48 0.67 -12.32 16 10 H -0.31 -15.74 7.11 99.48 0.71 -15.03 16 11 H -0.25 -11.33 7.11 99.48 0.71 -10.62 16 12 C 0.20 8.37 4.99 85.64 0.43 8.80 16 13 C -0.25 -9.73 5.58 -20.14 -0.11 -9.85 16 14 C 0.04 1.88 11.96 85.24 1.02 2.90 16 15 N -0.34 -13.43 12.58 -57.03 -0.72 -14.14 16 16 N -0.38 -11.52 4.01 -369.55 -1.48 -13.01 16 17 C 0.10 1.68 11.47 127.77 1.47 3.14 16 18 C 0.07 2.01 9.81 83.54 0.82 2.83 16 19 H 0.07 1.87 8.14 -2.39 -0.02 1.85 16 20 H 0.01 0.57 8.14 -2.39 -0.02 0.55 16 21 H 0.05 1.66 6.34 -2.39 -0.02 1.64 16 22 H 0.04 1.49 8.08 -2.39 -0.02 1.47 16 23 H 0.07 2.21 7.83 -2.39 -0.02 2.19 16 24 H 0.26 15.77 8.31 -92.71 -0.77 15.00 16 25 H 0.03 1.54 3.17 -2.39 -0.01 1.53 16 26 H 0.08 2.71 7.86 -2.39 -0.02 2.69 16 27 H 0.15 7.23 8.06 -2.91 -0.02 7.20 16 28 H 0.09 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.11 1.26 8.14 -2.39 -0.02 1.24 16 30 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 31 H 0.21 4.19 8.06 -2.91 -0.02 4.17 16 Total: -1.00 -73.87 260.63 5.61 -68.25 By element: Atomic # 1 Polarization: 4.90 SS G_CDS: 1.06 Total: 5.96 kcal Atomic # 6 Polarization: -11.15 SS G_CDS: 6.20 Total: -4.96 kcal Atomic # 7 Polarization: -114.09 SS G_CDS: -3.36 Total: -117.45 kcal Atomic # 14 Polarization: 46.48 SS G_CDS: 1.71 Total: 48.19 kcal Total: -73.87 5.61 -68.25 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000050539875.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.437 kcal (2) G-P(sol) polarization free energy of solvation -73.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.611 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds