Wall clock time and date at job start Sun Mar 29 2020 21:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.34512 * 125.78762 * 89.99753 * 3 2 1 5 5 C 1.41385 * 106.83926 * 179.76997 * 4 3 2 6 6 C 1.34515 * 106.83992 * 0.23220 * 5 4 3 7 7 C 1.50704 * 125.79063 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46973 * 90.00036 * 7 6 5 9 9 C 1.46895 * 110.99703 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46997 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99783 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00104 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99812 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00143 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46873 * 60.00178 * 14 12 10 16 16 H 1.48507 * 109.47231 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47313 * 300.00016 * 14 12 10 18 18 O 1.34305 * 125.78789 * 270.15965 * 3 2 1 19 19 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46811 * 299.99891 * 1 2 3 21 21 H 1.08999 * 109.47186 * 59.99914 * 1 2 3 22 22 H 1.08999 * 109.46874 * 239.99702 * 2 1 3 23 23 H 1.09008 * 109.46962 * 119.99965 * 2 1 3 24 24 H 1.08002 * 126.58498 * 0.04167 * 4 3 2 25 25 H 1.08002 * 126.58069 * 180.26215 * 5 4 3 26 26 H 1.08996 * 109.46985 * 209.99865 * 7 6 5 27 27 H 1.09000 * 109.47266 * 329.99985 * 7 6 5 28 28 H 1.00891 * 111.00350 * 56.04241 * 8 7 6 29 29 H 1.09009 * 109.47048 * 299.99187 * 9 8 7 30 30 H 1.08995 * 109.47934 * 59.99606 * 9 8 7 31 31 H 0.96999 * 119.99731 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7454 3.4214 0.6321 6 6 2.7269 3.3755 -0.7122 7 6 3.1277 4.4951 -1.6379 8 7 4.5614 4.3906 -1.9407 9 6 4.9889 5.4687 -2.8422 10 6 6.4618 5.3292 -3.1290 11 1 7.0241 4.5209 -2.6855 12 6 7.0915 6.2336 -3.9575 13 7 6.4066 7.2177 -4.4981 14 14 8.9173 6.0612 -4.3124 15 1 9.1749 4.7470 -4.9542 16 1 9.3493 7.1503 -5.2250 17 1 9.6792 6.1489 -3.0408 18 8 2.2913 2.1623 -1.0895 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8901 24 1 2.1860 1.8539 2.1205 25 1 3.0473 4.2590 1.2433 26 1 2.5550 4.4245 -2.5626 27 1 2.9265 5.4529 -1.1581 28 1 4.7843 3.4858 -2.3272 29 1 4.4291 5.4052 -3.7755 30 1 4.8006 6.4331 -2.3705 31 1 6.8496 7.8542 -5.0807 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000051721940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:33 Heat of formation + Delta-G solvation = -0.962081 kcal Electronic energy + Delta-G solvation = -13017.917891 eV Core-core repulsion = 10686.467541 eV Total energy + Delta-G solvation = -2331.450350 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.30892 -35.56039 -34.13251 -32.79317 -32.19953 -29.34235 -26.69246 -24.54707 -22.63639 -21.45885 -21.38018 -19.81127 -16.83390 -16.05337 -15.85789 -14.90011 -14.51767 -14.37682 -14.31963 -13.33862 -12.98939 -12.62025 -12.47697 -12.36982 -12.00205 -11.72005 -11.41990 -11.24570 -11.07617 -10.74756 -10.67085 -10.00081 -9.59537 -9.25182 -8.49890 -8.04955 -7.38258 -6.04670 -4.06937 1.96619 2.88837 3.13910 3.34136 3.37546 3.41246 4.42871 4.69943 4.90552 5.10159 5.20178 5.31033 5.31518 5.40509 5.44570 5.63883 5.70364 5.85156 5.97323 6.01967 6.09335 6.31904 6.42207 6.81635 7.14976 7.35608 7.48622 7.74216 8.07581 8.30736 8.52847 9.01318 9.57926 11.06436 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064880 B = 0.005198 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.464622 B = 5385.904983 C = 5476.452671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.041 4.041 3 C -0.026 4.026 4 C -0.209 4.209 5 C -0.200 4.200 6 C 0.006 3.994 7 C 0.136 3.864 8 N -0.684 5.684 9 C 0.193 3.807 10 C -0.516 4.516 11 H 0.063 0.937 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.901 3.099 15 H -0.277 1.277 16 H -0.287 1.287 17 H -0.276 1.276 18 O -0.176 6.176 19 H 0.062 0.938 20 H 0.058 0.942 21 H 0.058 0.942 22 H 0.079 0.921 23 H 0.090 0.910 24 H 0.142 0.858 25 H 0.146 0.854 26 H 0.036 0.964 27 H 0.096 0.904 28 H 0.333 0.667 29 H -0.010 1.010 30 H 0.031 0.969 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.342 -11.247 8.550 17.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.078 4.078 3 C -0.076 4.076 4 C -0.228 4.228 5 C -0.220 4.220 6 C -0.044 4.044 7 C 0.007 3.993 8 N -0.316 5.316 9 C 0.067 3.933 10 C -0.554 4.554 11 H 0.081 0.919 12 C -0.145 4.145 13 N -0.537 5.537 14 Si 0.729 3.271 15 H -0.202 1.202 16 H -0.213 1.213 17 H -0.201 1.201 18 O -0.073 6.073 19 H 0.081 0.919 20 H 0.077 0.923 21 H 0.077 0.923 22 H 0.097 0.903 23 H 0.108 0.892 24 H 0.160 0.840 25 H 0.164 0.836 26 H 0.054 0.946 27 H 0.114 0.886 28 H 0.150 0.850 29 H 0.007 0.993 30 H 0.049 0.951 31 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -10.164 -10.824 8.684 17.201 hybrid contribution 0.657 -0.145 -0.832 1.070 sum -9.507 -10.969 7.852 16.503 Atomic orbital electron populations 1.21790 0.94288 1.01960 1.02621 1.20016 0.96077 0.87896 1.03798 1.22300 1.05746 0.95068 0.84466 1.21501 1.07534 0.94816 0.98943 1.21511 1.07200 0.99291 0.93991 1.22682 1.01450 0.85257 0.95058 1.20397 0.91601 0.92169 0.95168 1.60771 1.11078 1.08084 1.51632 1.19612 0.95649 0.89316 0.88729 1.21122 0.93764 1.12615 1.27945 0.91917 1.24984 0.98627 0.95156 0.95731 1.69954 1.36256 1.15343 1.32193 0.86508 0.84820 0.77585 0.78183 1.20237 1.21295 1.20099 1.83953 1.65368 1.22924 1.35074 0.91904 0.92275 0.92309 0.90276 0.89193 0.84015 0.83586 0.94568 0.88610 0.85040 0.99253 0.95063 0.92789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.89 37.16 0.37 -0.91 16 2 C -0.04 -0.41 6.47 -27.88 -0.18 -0.59 16 3 C -0.03 -0.36 6.57 -35.62 -0.23 -0.60 16 4 C -0.21 -2.96 10.81 -39.70 -0.43 -3.39 16 5 C -0.20 -3.22 10.81 -39.70 -0.43 -3.65 16 6 C 0.01 0.10 6.83 -35.62 -0.24 -0.14 16 7 C 0.14 2.55 6.22 -4.97 -0.03 2.52 16 8 N -0.68 -15.31 6.48 -116.33 -0.75 -16.07 16 9 C 0.19 5.12 5.44 -4.98 -0.03 5.09 16 10 C -0.52 -14.82 9.32 -34.44 -0.32 -15.14 16 11 H 0.06 1.77 7.81 -52.49 -0.41 1.36 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 13 N -0.90 -26.91 13.29 55.43 0.74 -26.17 16 14 Si 0.90 21.84 29.54 -169.99 -5.02 16.82 16 15 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 16 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 17 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 18 O -0.18 -3.02 10.65 5.70 0.06 -2.96 16 19 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 20 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 21 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 22 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.09 0.73 8.14 -51.92 -0.42 0.30 16 24 H 0.14 1.62 8.06 -52.49 -0.42 1.19 16 25 H 0.15 2.17 8.06 -52.49 -0.42 1.75 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.10 1.71 8.14 -51.93 -0.42 1.28 16 28 H 0.33 7.33 8.72 -39.30 -0.34 6.99 16 29 H -0.01 -0.29 8.14 -51.92 -0.42 -0.71 16 30 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 31 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 273.33 15.07 4.12 4.12 Total: -1.00 -30.84 273.33 -7.02 -37.86 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -4.54 Total: 1.67 kcal Atomic # 6 Polarization: -13.64 SS G_CDS: -1.62 Total: -15.27 kcal Atomic # 7 Polarization: -42.22 SS G_CDS: -0.02 Total: -42.24 kcal Atomic # 8 Polarization: -3.02 SS G_CDS: 0.06 Total: -2.96 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -30.84 -7.02 -37.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051721940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.898 kcal (2) G-P(sol) polarization free energy of solvation -30.839 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.059 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.860 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds