Wall clock time and date at job start Sun Mar 29 2020 21:39:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50702 * 109.47189 * 2 1 4 4 C 1.34512 * 125.78762 * 89.99753 * 3 2 1 5 5 C 1.41385 * 106.83926 * 179.76997 * 4 3 2 6 6 C 1.34515 * 106.83992 * 0.23220 * 5 4 3 7 7 C 1.50704 * 125.79063 * 180.02562 * 6 5 4 8 8 N 1.46903 * 109.46973 * 90.00036 * 7 6 5 9 9 C 1.46895 * 110.99703 * 180.02562 * 8 7 6 10 10 C 1.50706 * 109.46997 * 179.97438 * 9 8 7 11 11 H 1.07995 * 119.99783 * 359.97438 * 10 9 8 12 12 C 1.37873 * 120.00104 * 179.97438 * 10 9 8 13 13 N 1.31521 * 119.99812 * 359.97438 * 12 10 9 14 14 Si 1.86799 * 120.00143 * 179.97438 * 12 10 9 15 15 H 1.48505 * 109.46873 * 60.00178 * 14 12 10 16 16 H 1.48507 * 109.47231 * 179.97438 * 14 12 10 17 17 H 1.48493 * 109.47313 * 300.00016 * 14 12 10 18 18 O 1.34305 * 125.78789 * 270.15965 * 3 2 1 19 19 H 1.09001 * 109.47228 * 180.02562 * 1 2 3 20 20 H 1.09006 * 109.46811 * 299.99891 * 1 2 3 21 21 H 1.08999 * 109.47186 * 59.99914 * 1 2 3 22 22 H 1.08999 * 109.46874 * 239.99702 * 2 1 3 23 23 H 1.09008 * 109.46962 * 119.99965 * 2 1 3 24 24 H 1.08002 * 126.58498 * 0.04167 * 4 3 2 25 25 H 1.08002 * 126.58069 * 180.26215 * 5 4 3 26 26 H 1.08996 * 109.46985 * 209.99865 * 7 6 5 27 27 H 1.09000 * 109.47266 * 329.99985 * 7 6 5 28 28 H 1.00891 * 111.00350 * 56.04241 * 8 7 6 29 29 H 1.09009 * 109.47048 * 299.99187 * 9 8 7 30 30 H 1.08995 * 109.47934 * 59.99606 * 9 8 7 31 31 H 0.96999 * 119.99731 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2945 2.1625 1.0911 5 6 2.7454 3.4214 0.6321 6 6 2.7269 3.3755 -0.7122 7 6 3.1277 4.4951 -1.6379 8 7 4.5614 4.3906 -1.9407 9 6 4.9889 5.4687 -2.8422 10 6 6.4618 5.3292 -3.1290 11 1 7.0241 4.5209 -2.6855 12 6 7.0915 6.2336 -3.9575 13 7 6.4066 7.2177 -4.4981 14 14 8.9173 6.0612 -4.3124 15 1 9.1749 4.7470 -4.9542 16 1 9.3493 7.1503 -5.2250 17 1 9.6792 6.1489 -3.0408 18 8 2.2913 2.1623 -1.0895 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3633 0.5139 0.8901 21 1 -0.3633 0.5138 -0.8900 22 1 1.8933 -0.5139 -0.8900 23 1 1.8933 -0.5139 0.8901 24 1 2.1860 1.8539 2.1205 25 1 3.0473 4.2590 1.2433 26 1 2.5550 4.4245 -2.5626 27 1 2.9265 5.4529 -1.1581 28 1 4.7843 3.4858 -2.3272 29 1 4.4291 5.4052 -3.7755 30 1 4.8006 6.4331 -2.3705 31 1 6.8496 7.8542 -5.0807 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000051721940.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:39:33 Heat of formation + Delta-G solvation = -21.086393 kcal Electronic energy + Delta-G solvation = -13018.790546 eV Core-core repulsion = 10686.467541 eV Total energy + Delta-G solvation = -2332.323005 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.52530 -37.33693 -35.13365 -34.64130 -33.61785 -30.85651 -28.38104 -26.02579 -23.88270 -23.29671 -22.62718 -21.00152 -18.76318 -17.47566 -17.18248 -16.72464 -16.27237 -15.61373 -15.25685 -15.05597 -14.40032 -13.93454 -13.72946 -13.70830 -13.32599 -13.23612 -12.99675 -12.66483 -12.53837 -12.36609 -12.06944 -11.87402 -11.39200 -10.79380 -10.67665 -9.37495 -9.15230 -8.24320 -6.36074 0.74550 1.41438 1.45092 1.53228 1.69522 1.96997 2.40003 3.09041 3.57028 3.74243 3.93358 4.16521 4.19277 4.38614 4.41237 4.52982 4.62858 4.87657 4.94633 5.00682 5.02095 5.19106 5.20921 5.21699 5.35538 5.56773 5.67817 5.95344 6.26142 6.32620 6.56397 6.81313 7.34554 8.87030 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.064880 B = 0.005198 C = 0.005112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 431.464622 B = 5385.904983 C = 5476.452671 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.042 4.042 3 C -0.023 4.023 4 C -0.216 4.216 5 C -0.197 4.197 6 C -0.027 4.027 7 C 0.141 3.859 8 N -0.683 5.683 9 C 0.207 3.793 10 C -0.541 4.541 11 H 0.063 0.937 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.975 3.025 15 H -0.267 1.267 16 H -0.280 1.280 17 H -0.268 1.268 18 O -0.196 6.196 19 H 0.087 0.913 20 H 0.061 0.939 21 H 0.043 0.957 22 H 0.082 0.918 23 H 0.117 0.883 24 H 0.173 0.827 25 H 0.155 0.845 26 H 0.035 0.965 27 H 0.101 0.899 28 H 0.334 0.666 29 H -0.033 1.033 30 H 0.010 0.990 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.018 -12.830 9.643 18.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 C -0.073 4.073 4 C -0.235 4.235 5 C -0.217 4.217 6 C -0.077 4.077 7 C 0.012 3.988 8 N -0.314 5.314 9 C 0.080 3.920 10 C -0.579 4.579 11 H 0.081 0.919 12 C -0.195 4.195 13 N -0.572 5.572 14 Si 0.799 3.201 15 H -0.192 1.192 16 H -0.205 1.205 17 H -0.193 1.193 18 O -0.094 6.094 19 H 0.106 0.894 20 H 0.080 0.920 21 H 0.062 0.938 22 H 0.100 0.900 23 H 0.135 0.865 24 H 0.190 0.810 25 H 0.172 0.828 26 H 0.053 0.947 27 H 0.119 0.881 28 H 0.151 0.849 29 H -0.016 1.016 30 H 0.028 0.972 31 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -9.857 -12.420 9.792 18.636 hybrid contribution 0.459 0.287 -1.114 1.238 sum -9.398 -12.133 8.678 17.631 Atomic orbital electron populations 1.21777 0.93103 1.03419 1.02025 1.20284 0.96986 0.85346 1.05269 1.23237 1.03950 0.96340 0.83732 1.21853 1.07360 0.93811 1.00483 1.21808 1.05921 1.00435 0.93540 1.22354 1.04404 0.85687 0.95249 1.20302 0.89311 0.93569 0.95649 1.60653 1.13820 1.06931 1.50007 1.19280 0.94916 0.89704 0.88151 1.21474 0.94859 1.12993 1.28541 0.91885 1.25942 1.03803 0.94530 0.95193 1.70076 1.38421 1.16080 1.32641 0.85356 0.78454 0.78012 0.78292 1.19192 1.20545 1.19285 1.83933 1.65830 1.23003 1.36614 0.89437 0.91989 0.93811 0.89963 0.86532 0.80973 0.82770 0.94714 0.88051 0.84923 1.01573 0.97191 0.92451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.89 71.98 0.71 -1.41 16 2 C -0.04 -0.72 6.47 29.85 0.19 -0.53 16 3 C -0.02 -0.60 6.57 24.83 0.16 -0.44 16 4 C -0.22 -5.64 10.81 22.19 0.24 -5.41 16 5 C -0.20 -6.15 10.81 22.19 0.24 -5.91 16 6 C -0.03 -0.96 6.83 24.83 0.17 -0.79 16 7 C 0.14 5.41 6.22 85.56 0.53 5.94 16 8 N -0.68 -31.28 6.48 -521.97 -3.38 -34.66 16 9 C 0.21 11.32 5.44 85.56 0.47 11.79 16 10 C -0.54 -31.46 9.32 25.60 0.24 -31.22 16 11 H 0.06 3.58 7.81 -2.91 -0.02 3.56 16 12 C 0.00 0.22 5.46 84.65 0.46 0.69 16 13 N -0.93 -56.54 13.29 21.45 0.28 -56.26 16 14 Si 0.97 44.60 29.54 68.60 2.03 46.63 16 15 H -0.27 -11.73 7.11 99.48 0.71 -11.03 16 16 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 17 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 18 O -0.20 -6.65 10.65 -2.52 -0.03 -6.68 16 19 H 0.09 0.86 8.14 -2.39 -0.02 0.84 16 20 H 0.06 0.87 8.14 -2.38 -0.02 0.85 16 21 H 0.04 0.76 8.14 -2.39 -0.02 0.74 16 22 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 23 H 0.12 1.42 8.14 -2.38 -0.02 1.40 16 24 H 0.17 3.32 8.06 -2.91 -0.02 3.30 16 25 H 0.15 4.43 8.06 -2.91 -0.02 4.40 16 26 H 0.03 1.33 8.14 -2.39 -0.02 1.31 16 27 H 0.10 3.71 8.14 -2.39 -0.02 3.69 16 28 H 0.33 15.04 8.72 -89.70 -0.78 14.25 16 29 H -0.03 -1.94 8.14 -2.38 -0.02 -1.96 16 30 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 31 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -66.08 273.33 2.64 -63.44 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 0.32 Total: 14.81 kcal Atomic # 6 Polarization: -30.71 SS G_CDS: 3.42 Total: -27.29 kcal Atomic # 7 Polarization: -87.82 SS G_CDS: -3.10 Total: -90.92 kcal Atomic # 8 Polarization: -6.65 SS G_CDS: -0.03 Total: -6.68 kcal Atomic # 14 Polarization: 44.60 SS G_CDS: 2.03 Total: 46.63 kcal Total: -66.08 2.64 -63.44 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000051721940.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.355 kcal (2) G-P(sol) polarization free energy of solvation -66.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.729 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.441 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds