Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46904 * 110.99582 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00114 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00325 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99965 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47500 * 89.99766 * 14 12 10 16 16 H 1.48503 * 109.47385 * 209.99976 * 14 12 10 17 17 H 1.48509 * 109.47079 * 329.99430 * 14 12 10 18 18 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 19 19 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 20 20 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 21 21 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 22 22 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 23 23 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 25 25 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 26 26 H 1.00898 * 111.00310 * 303.94783 * 7 6 5 27 27 H 1.08998 * 109.47233 * 299.99877 * 8 7 6 28 28 H 1.09004 * 109.47284 * 60.00198 * 8 7 6 29 29 H 1.08998 * 109.47222 * 300.00185 * 9 8 7 30 30 H 1.09004 * 109.46643 * 60.00106 * 9 8 7 31 31 H 0.96995 * 120.00306 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 6.3091 -2.8380 1.4501 9 6 6.6751 -3.1236 2.9079 10 6 7.8628 -4.0498 2.9554 11 1 8.3120 -4.3994 2.0376 12 6 8.3767 -4.4501 4.1706 13 7 9.4136 -5.2580 4.2121 14 14 7.6002 -3.8449 5.7581 15 1 6.5340 -4.7888 6.1789 16 1 8.6376 -3.7656 6.8178 17 1 7.0120 -2.4989 5.5397 18 8 2.2923 -1.0895 0.0044 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9666 2.1203 -0.0045 23 1 4.5212 1.2433 0.0076 24 1 4.5127 -2.5646 -0.4964 25 1 5.6061 -1.1601 -0.4949 26 1 5.3323 -1.0872 1.9189 27 1 6.0616 -3.7729 0.9473 28 1 7.1556 -2.3687 0.9486 29 1 6.9227 -2.1886 3.4103 30 1 5.8287 -3.5927 3.4097 31 1 9.7750 -5.5399 5.0670 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053038117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = 2.476011 kcal Electronic energy + Delta-G solvation = -12941.388360 eV Core-core repulsion = 10610.087097 eV Total energy + Delta-G solvation = -2331.301263 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.51779 -36.29698 -33.20014 -33.11694 -31.96975 -30.15978 -27.44883 -24.48395 -22.93577 -21.64807 -20.54049 -20.02234 -16.80000 -16.66065 -16.16142 -15.24255 -14.41286 -14.32898 -13.67473 -13.58419 -13.26875 -13.03125 -12.78475 -12.72305 -12.52680 -12.09469 -11.52316 -11.25358 -11.02664 -10.21440 -9.92355 -9.80576 -9.78010 -9.23949 -8.53659 -8.33082 -8.00075 -6.04459 -4.03134 1.72701 2.61117 2.93482 3.33863 3.40542 3.45600 4.46701 4.56350 4.75112 4.96511 5.04081 5.17544 5.27249 5.30203 5.42971 5.50092 5.61639 5.83544 5.96550 6.14386 6.16908 6.21910 6.55555 6.73634 7.06258 7.23151 7.36143 7.52389 7.69566 7.85718 8.52302 8.99180 9.57833 11.08796 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056763 B = 0.005281 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.162038 B = 5300.458708 C = 5510.896755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.022 4.022 3 C -0.213 4.213 4 C -0.212 4.212 5 C 0.006 3.994 6 C 0.134 3.866 7 N -0.691 5.691 8 C 0.073 3.927 9 C -0.010 4.010 10 C -0.522 4.522 11 H 0.072 0.928 12 C 0.068 3.932 13 N -0.904 5.904 14 Si 0.882 3.118 15 H -0.276 1.276 16 H -0.289 1.289 17 H -0.265 1.265 18 O -0.167 6.167 19 H 0.078 0.922 20 H 0.076 0.924 21 H 0.086 0.914 22 H 0.144 0.856 23 H 0.145 0.855 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.340 0.660 27 H 0.068 0.932 28 H 0.026 0.974 29 H 0.014 0.986 30 H 0.022 0.978 31 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.011 12.115 -8.520 21.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.072 4.072 3 C -0.232 4.232 4 C -0.232 4.232 5 C -0.045 4.045 6 C 0.005 3.995 7 N -0.323 5.323 8 C -0.054 4.054 9 C -0.048 4.048 10 C -0.561 4.561 11 H 0.090 0.910 12 C -0.134 4.134 13 N -0.542 5.542 14 Si 0.710 3.290 15 H -0.202 1.202 16 H -0.215 1.215 17 H -0.190 1.190 18 O -0.063 6.063 19 H 0.096 0.904 20 H 0.094 0.906 21 H 0.104 0.896 22 H 0.162 0.838 23 H 0.163 0.837 24 H 0.106 0.894 25 H 0.078 0.922 26 H 0.157 0.843 27 H 0.086 0.914 28 H 0.044 0.956 29 H 0.032 0.968 30 H 0.040 0.960 31 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -15.440 11.194 -8.336 20.812 hybrid contribution 0.539 1.083 0.653 1.375 sum -14.901 12.277 -7.683 20.779 Atomic orbital electron populations 1.20266 0.85385 1.03951 1.03213 1.22416 0.94001 0.84398 1.06391 1.21502 0.92762 0.99166 1.09794 1.21569 0.98170 0.93940 1.09520 1.22448 0.83092 0.94231 1.04705 1.20350 0.89642 0.97075 0.92441 1.60618 1.41345 1.19871 1.10483 1.22010 0.88121 0.94897 1.00414 1.19552 0.96897 0.96869 0.91486 1.21054 1.12714 1.27857 0.94442 0.91037 1.24998 0.94652 0.94533 0.99182 1.69912 1.23923 1.34500 1.25914 0.86735 0.79058 0.80085 0.83141 1.20204 1.21466 1.18996 1.83989 1.16434 1.34839 1.71013 0.90367 0.90551 0.89573 0.83790 0.83694 0.89439 0.92205 0.84277 0.91398 0.95593 0.96753 0.95993 0.92697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.42 36.00 0.38 -0.20 16 2 C -0.02 -0.27 7.32 -35.63 -0.26 -0.53 16 3 C -0.21 -2.58 10.81 -39.71 -0.43 -3.01 16 4 C -0.21 -2.80 10.81 -39.70 -0.43 -3.23 16 5 C 0.01 0.09 6.83 -35.62 -0.24 -0.16 16 6 C 0.13 1.96 6.22 -4.97 -0.03 1.93 16 7 N -0.69 -12.11 6.49 -115.05 -0.75 -12.86 16 8 C 0.07 1.48 5.62 -3.82 -0.02 1.46 16 9 C -0.01 -0.25 4.30 -27.89 -0.12 -0.37 16 10 C -0.52 -15.04 9.66 -34.44 -0.33 -15.38 16 11 H 0.07 2.19 7.99 -52.49 -0.42 1.77 16 12 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 13 N -0.90 -28.08 13.96 55.43 0.77 -27.31 16 14 Si 0.88 22.12 27.47 -169.99 -4.67 17.45 16 15 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 16 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 17 H -0.27 -6.42 6.54 56.52 0.37 -6.05 16 18 O -0.17 -2.54 10.65 5.72 0.06 -2.48 16 19 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 20 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 21 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 22 H 0.14 1.37 8.06 -52.49 -0.42 0.94 16 23 H 0.15 1.65 8.06 -52.48 -0.42 1.23 16 24 H 0.09 1.25 8.14 -51.93 -0.42 0.83 16 25 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 26 H 0.34 5.69 8.72 -39.29 -0.34 5.34 16 27 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 28 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 29 H 0.01 0.34 7.20 -51.93 -0.37 -0.03 16 30 H 0.02 0.54 7.57 -51.93 -0.39 0.15 16 31 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 LS Contribution 269.68 15.07 4.06 4.06 Total: -1.00 -32.01 269.68 -6.61 -38.62 By element: Atomic # 1 Polarization: 4.61 SS G_CDS: -4.50 Total: 0.11 kcal Atomic # 6 Polarization: -16.00 SS G_CDS: -1.59 Total: -17.59 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.03 Total: -40.17 kcal Atomic # 8 Polarization: -2.54 SS G_CDS: 0.06 Total: -2.48 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -4.67 Total: 17.45 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -32.01 -6.61 -38.62 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053038117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.092 kcal (2) G-P(sol) polarization free energy of solvation -32.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.476 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds