Wall clock time and date at job start Sun Mar 29 2020 21:38:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34515 * 125.79319 * 2 1 4 4 C 1.41376 * 106.84242 * 179.73499 * 3 2 1 5 5 C 1.34516 * 106.84089 * 0.02562 * 4 3 2 6 6 C 1.50708 * 125.78754 * 180.02562 * 5 4 3 7 7 N 1.46900 * 109.46788 * 90.00093 * 6 5 4 8 8 C 1.46904 * 110.99582 * 179.97438 * 7 6 5 9 9 C 1.53000 * 109.47103 * 179.97438 * 8 7 6 10 10 C 1.50692 * 109.47212 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00078 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00114 * 179.97438 * 10 9 8 13 13 N 1.31515 * 120.00325 * 180.02562 * 12 10 9 14 14 Si 1.86798 * 119.99965 * 0.02562 * 12 10 9 15 15 H 1.48493 * 109.47500 * 89.99766 * 14 12 10 16 16 H 1.48503 * 109.47385 * 209.99976 * 14 12 10 17 17 H 1.48509 * 109.47079 * 329.99430 * 14 12 10 18 18 O 1.34298 * 108.42070 * 0.02562 * 5 4 3 19 19 H 1.09007 * 109.47122 * 90.00090 * 1 2 3 20 20 H 1.09004 * 109.47299 * 210.00077 * 1 2 3 21 21 H 1.09003 * 109.47154 * 330.00412 * 1 2 3 22 22 H 1.07995 * 126.57546 * 359.70154 * 3 2 1 23 23 H 1.08003 * 126.57866 * 179.97438 * 4 3 2 24 24 H 1.09000 * 109.46884 * 209.99804 * 6 5 4 25 25 H 1.09003 * 109.47129 * 329.99652 * 6 5 4 26 26 H 1.00898 * 111.00310 * 303.94783 * 7 6 5 27 27 H 1.08998 * 109.47233 * 299.99877 * 8 7 6 28 28 H 1.09004 * 109.47284 * 60.00198 * 8 7 6 29 29 H 1.08998 * 109.47222 * 300.00185 * 9 8 7 30 30 H 1.09004 * 109.46643 * 60.00106 * 9 8 7 31 31 H 0.96995 * 120.00306 * 180.02562 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2937 1.0911 0.0000 4 6 3.6308 0.6320 0.0063 5 6 3.5813 -0.7123 0.0091 6 6 4.7705 -1.6380 0.0164 7 7 5.1508 -1.9355 1.4038 8 6 6.3091 -2.8380 1.4501 9 6 6.6751 -3.1236 2.9079 10 6 7.8628 -4.0498 2.9554 11 1 8.3120 -4.3994 2.0376 12 6 8.3767 -4.4501 4.1706 13 7 9.4136 -5.2580 4.2121 14 14 7.6002 -3.8449 5.7581 15 1 6.5340 -4.7888 6.1789 16 1 8.6376 -3.7656 6.8178 17 1 7.0120 -2.4989 5.5397 18 8 2.2923 -1.0895 0.0044 19 1 -0.3634 0.0000 -1.0277 20 1 -0.3634 -0.8900 0.5139 21 1 -0.3633 0.8900 0.5138 22 1 1.9666 2.1203 -0.0045 23 1 4.5212 1.2433 0.0076 24 1 4.5127 -2.5646 -0.4964 25 1 5.6061 -1.1601 -0.4949 26 1 5.3323 -1.0872 1.9189 27 1 6.0616 -3.7729 0.9473 28 1 7.1556 -2.3687 0.9486 29 1 6.9227 -2.1886 3.4103 30 1 5.8287 -3.5927 3.4097 31 1 9.7750 -5.5399 5.0670 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053038117.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:38:36 Heat of formation + Delta-G solvation = -19.410812 kcal Electronic energy + Delta-G solvation = -12942.337444 eV Core-core repulsion = 10610.087097 eV Total energy + Delta-G solvation = -2332.250347 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -43.50644 -37.75720 -35.13616 -34.08310 -33.30875 -31.68603 -28.74619 -25.99379 -24.29262 -22.63938 -22.34572 -21.06319 -18.97377 -17.78708 -17.22602 -16.50387 -16.35895 -15.53833 -15.14847 -14.86206 -14.54802 -14.42263 -13.82665 -13.72294 -13.70339 -13.36258 -12.91829 -12.89760 -12.45730 -12.03732 -11.82976 -11.68348 -11.43150 -10.82313 -10.77796 -9.51245 -9.18168 -8.30615 -6.35301 0.73057 1.37629 1.38040 1.50887 1.66015 2.00573 2.36212 3.05048 3.33764 3.75080 4.03541 4.13775 4.22466 4.39750 4.50904 4.53610 4.61577 4.72889 4.86638 4.93550 4.93933 5.08287 5.23342 5.30272 5.46080 5.60970 5.66209 6.00584 6.21085 6.26310 6.42680 6.72810 7.29807 8.85950 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056763 B = 0.005281 C = 0.005080 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 493.162038 B = 5300.458708 C = 5510.896755 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C -0.028 4.028 3 C -0.224 4.224 4 C -0.208 4.208 5 C -0.025 4.025 6 C 0.138 3.862 7 N -0.696 5.696 8 C 0.087 3.913 9 C -0.006 4.006 10 C -0.534 4.534 11 H 0.035 0.965 12 C 0.007 3.993 13 N -0.950 5.950 14 Si 0.953 3.047 15 H -0.269 1.269 16 H -0.282 1.282 17 H -0.248 1.248 18 O -0.192 6.192 19 H 0.095 0.905 20 H 0.076 0.924 21 H 0.109 0.891 22 H 0.171 0.829 23 H 0.161 0.839 24 H 0.085 0.915 25 H 0.078 0.922 26 H 0.345 0.655 27 H 0.060 0.940 28 H 0.028 0.972 29 H 0.021 0.979 30 H 0.019 0.981 31 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.886 14.081 -8.114 23.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.078 4.078 3 C -0.243 4.243 4 C -0.228 4.228 5 C -0.075 4.075 6 C 0.009 3.991 7 N -0.329 5.329 8 C -0.042 4.042 9 C -0.043 4.043 10 C -0.573 4.573 11 H 0.054 0.946 12 C -0.190 4.190 13 N -0.590 5.590 14 Si 0.776 3.224 15 H -0.194 1.194 16 H -0.208 1.208 17 H -0.172 1.172 18 O -0.090 6.090 19 H 0.114 0.886 20 H 0.095 0.905 21 H 0.127 0.873 22 H 0.188 0.812 23 H 0.178 0.822 24 H 0.103 0.897 25 H 0.096 0.904 26 H 0.163 0.837 27 H 0.079 0.921 28 H 0.047 0.953 29 H 0.039 0.961 30 H 0.037 0.963 31 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -17.327 13.177 -7.950 23.174 hybrid contribution 1.098 0.481 0.428 1.273 sum -16.229 13.658 -7.522 22.505 Atomic orbital electron populations 1.20481 0.82572 1.05080 1.04672 1.23298 0.95701 0.83872 1.04929 1.21882 0.92207 1.00451 1.09712 1.21897 0.99437 0.93575 1.07887 1.22425 0.83027 0.94755 1.07272 1.20319 0.90549 0.97479 0.90705 1.60491 1.39657 1.19999 1.12705 1.21674 0.89363 0.95497 0.97632 1.19443 0.94749 0.95843 0.94306 1.21395 1.14049 1.28548 0.93295 0.94646 1.25971 0.95115 0.94653 1.03266 1.70055 1.25689 1.36136 1.27153 0.85618 0.78278 0.80304 0.78168 1.19424 1.20783 1.17168 1.83968 1.16945 1.36390 1.71673 0.88645 0.90530 0.87294 0.81181 0.82159 0.89698 0.90408 0.83671 0.92112 0.95340 0.96070 0.96273 0.92384 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.97 10.42 71.23 0.74 -0.23 16 2 C -0.03 -0.64 7.32 24.83 0.18 -0.46 16 3 C -0.22 -4.85 10.81 22.19 0.24 -4.61 16 4 C -0.21 -5.07 10.81 22.19 0.24 -4.83 16 5 C -0.02 -0.70 6.83 24.84 0.17 -0.53 16 6 C 0.14 3.89 6.22 85.56 0.53 4.42 16 7 N -0.70 -23.57 6.49 -517.90 -3.36 -26.93 16 8 C 0.09 3.46 5.62 86.30 0.49 3.95 16 9 C -0.01 -0.27 4.30 29.85 0.13 -0.14 16 10 C -0.53 -31.26 9.66 25.60 0.25 -31.01 16 11 H 0.04 2.25 7.99 -2.91 -0.02 2.23 16 12 C 0.01 0.42 5.47 84.65 0.46 0.88 16 13 N -0.95 -60.09 13.96 21.45 0.30 -59.80 16 14 Si 0.95 45.16 27.47 68.60 1.88 47.04 16 15 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 16 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 17 H -0.25 -10.98 6.54 99.48 0.65 -10.33 16 18 O -0.19 -5.67 10.65 -2.45 -0.03 -5.70 16 19 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 20 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 21 H 0.11 0.97 8.14 -2.39 -0.02 0.95 16 22 H 0.17 2.65 8.06 -2.91 -0.02 2.62 16 23 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 24 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 25 H 0.08 1.90 8.14 -2.39 -0.02 1.89 16 26 H 0.35 10.98 8.72 -89.70 -0.78 10.19 16 27 H 0.06 2.49 8.14 -2.39 -0.02 2.47 16 28 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 29 H 0.02 0.98 7.20 -2.39 -0.02 0.96 16 30 H 0.02 0.92 7.57 -2.39 -0.02 0.90 16 31 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 Total: -1.00 -68.87 269.68 2.50 -66.38 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: 0.27 Total: 11.57 kcal Atomic # 6 Polarization: -35.99 SS G_CDS: 3.43 Total: -32.56 kcal Atomic # 7 Polarization: -83.66 SS G_CDS: -3.06 Total: -86.72 kcal Atomic # 8 Polarization: -5.67 SS G_CDS: -0.03 Total: -5.70 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.88 Total: 47.04 kcal Total: -68.87 2.50 -66.38 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053038117.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.966 kcal (2) G-P(sol) polarization free energy of solvation -68.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.411 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds