Wall clock time and date at job start Sun Mar 29 2020 21:57:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47097 * 2 1 4 4 H 1.09004 * 109.46851 * 305.81393 * 3 2 1 5 5 C 1.50700 * 109.47025 * 185.82096 * 3 2 1 6 6 H 1.07997 * 120.00241 * 239.14219 * 5 3 2 7 7 C 1.37879 * 120.00250 * 59.13865 * 5 3 2 8 8 N 1.31515 * 120.00528 * 199.66720 * 7 5 3 9 9 Si 1.86796 * 119.99795 * 19.66710 * 7 5 3 10 10 H 1.48497 * 109.47564 * 85.55726 * 9 7 5 11 11 H 1.48497 * 109.47365 * 205.55599 * 9 7 5 12 12 H 1.48502 * 109.47231 * 325.55844 * 9 7 5 13 13 N 1.46891 * 109.47457 * 65.81837 * 3 2 1 14 14 C 1.46899 * 111.00126 * 253.32170 * 13 3 2 15 15 C 1.50703 * 109.47051 * 184.23432 * 14 13 3 16 16 N 1.30500 * 125.65350 * 275.02496 * 15 14 13 17 17 C 1.34122 * 109.25489 * 180.02562 * 16 15 14 18 18 C 1.34662 * 108.02340 * 0.02562 * 17 16 15 19 19 N 1.35047 * 125.64524 * 94.72635 * 15 14 13 20 20 H 0.96997 * 126.40063 * 359.97438 * 19 15 14 21 21 H 1.09000 * 109.47327 * 297.72600 * 1 2 3 22 22 H 1.08995 * 109.46733 * 57.72061 * 1 2 3 23 23 H 1.08997 * 109.46848 * 177.72543 * 1 2 3 24 24 H 1.09000 * 109.46996 * 239.99457 * 2 1 3 25 25 H 1.09009 * 109.46639 * 119.99494 * 2 1 3 26 26 H 0.96995 * 120.00508 * 179.97438 * 8 7 5 27 27 H 1.00907 * 111.00145 * 129.36769 * 13 3 2 28 28 H 1.09003 * 109.47185 * 304.23844 * 14 13 3 29 29 H 1.09004 * 109.46754 * 64.24280 * 14 13 3 30 30 H 1.08004 * 125.98498 * 180.02562 * 17 16 15 31 31 H 1.08004 * 126.59372 * 179.97438 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.5941 1.9855 -0.8334 5 6 3.5401 1.4449 -0.1441 6 1 4.1552 1.8981 0.6192 7 6 4.1274 0.8685 -1.2504 8 7 5.3947 0.5190 -1.2152 9 14 3.1229 0.5841 -2.7994 10 1 3.1314 1.8162 -3.6282 11 1 3.7134 -0.5371 -3.5735 12 1 1.7251 0.2471 -2.4281 13 7 1.6684 2.0933 1.2634 14 6 0.5797 3.0580 1.0583 15 6 0.2970 3.7787 2.3513 16 7 -0.4849 3.3517 3.3049 17 6 -0.4984 4.2497 4.3011 18 6 0.3050 5.2721 3.9513 19 7 0.8153 4.9708 2.7174 20 1 1.4316 5.5135 2.2012 21 1 -0.3634 0.4781 0.9097 22 1 -0.3632 0.5488 -0.8688 23 1 -0.3633 -1.0268 -0.0408 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8901 26 1 5.8078 0.1131 -1.9933 27 1 2.4680 2.5360 1.6910 28 1 0.8728 3.7801 0.2963 29 1 -0.3169 2.5302 0.7331 30 1 -1.0561 4.1671 5.2223 31 1 0.5114 6.1575 4.5345 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054184056.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:57:19 Heat of formation + Delta-G solvation = 34.196922 kcal Electronic energy + Delta-G solvation = -13653.482089 eV Core-core repulsion = 11355.849099 eV Total energy + Delta-G solvation = -2297.632990 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.87225 -38.27489 -34.66678 -33.44838 -33.29084 -30.77590 -28.89809 -25.90429 -24.11470 -22.39925 -21.59690 -21.39785 -19.33606 -18.41331 -17.20688 -16.24718 -15.76280 -15.38404 -15.19653 -14.85147 -14.59444 -14.39568 -13.91366 -13.70210 -13.25311 -13.00999 -12.72567 -12.53172 -12.08312 -11.64764 -11.26769 -11.03598 -10.96195 -10.91424 -10.53108 -9.36631 -9.09692 -8.34991 -6.32553 1.14804 1.36184 1.40245 1.49825 2.20583 2.30859 2.35535 2.98492 3.53231 3.70387 4.18788 4.43854 4.49673 4.51673 4.56851 4.65324 4.70541 4.85915 4.93732 5.20874 5.24274 5.29433 5.45178 5.55695 5.80253 5.88667 6.00342 6.41730 6.51433 6.63011 6.81659 7.24549 7.32054 8.81148 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.045578 B = 0.008091 C = 0.007433 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 614.186128 B = 3459.747351 C = 3765.860378 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.112 4.112 3 C 0.201 3.799 4 H 0.014 0.986 5 C -0.548 4.548 6 H 0.036 0.964 7 C 0.027 3.973 8 N -0.934 5.934 9 Si 0.923 3.077 10 H -0.274 1.274 11 H -0.289 1.289 12 H -0.221 1.221 13 N -0.674 5.674 14 C 0.145 3.855 15 C 0.197 3.803 16 N -0.514 5.514 17 C -0.064 4.064 18 C -0.040 4.040 19 N -0.559 5.559 20 H 0.431 0.569 21 H 0.059 0.941 22 H 0.049 0.951 23 H 0.054 0.946 24 H 0.043 0.957 25 H 0.040 0.960 26 H 0.266 0.734 27 H 0.332 0.668 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.186 0.814 31 H 0.217 0.783 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.135 9.287 4.577 15.205 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.151 4.151 3 C 0.092 3.908 4 H 0.032 0.968 5 C -0.586 4.586 6 H 0.054 0.946 7 C -0.173 4.173 8 N -0.572 5.572 9 Si 0.747 3.253 10 H -0.200 1.200 11 H -0.215 1.215 12 H -0.144 1.144 13 N -0.305 5.305 14 C 0.014 3.986 15 C -0.067 4.067 16 N -0.235 5.235 17 C -0.211 4.211 18 C -0.174 4.174 19 N -0.163 5.163 20 H 0.270 0.730 21 H 0.078 0.922 22 H 0.068 0.932 23 H 0.073 0.927 24 H 0.062 0.938 25 H 0.059 0.941 26 H 0.075 0.925 27 H 0.150 0.850 28 H 0.069 0.931 29 H 0.114 0.886 30 H 0.203 0.797 31 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -11.883 7.944 4.696 15.045 hybrid contribution 1.575 1.397 -1.208 2.427 sum -10.307 9.341 3.488 14.341 Atomic orbital electron populations 1.21741 0.95385 1.01157 1.01401 1.21851 0.95612 0.97945 0.99667 1.19308 0.92421 0.92112 0.86970 0.96806 1.21545 0.91712 1.38758 1.06539 0.94603 1.25747 0.95799 0.93613 1.02149 1.70155 1.14993 1.41118 1.30967 0.86296 0.82008 0.77924 0.79108 1.19965 1.21543 1.14401 1.60556 1.11336 1.32331 1.26288 1.20359 0.96987 0.92827 0.88381 1.23152 0.98057 0.86806 0.98721 1.70178 1.20884 1.30174 1.02239 1.22863 1.05046 0.92699 1.00513 1.23367 1.01953 1.03957 0.88149 1.43384 1.37350 1.18353 1.17206 0.72964 0.92225 0.93231 0.92731 0.93832 0.94077 0.92469 0.85040 0.93053 0.88642 0.79661 0.76636 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.94 9.12 71.98 0.66 -4.29 16 2 C -0.11 -4.88 4.86 30.59 0.15 -4.73 16 3 C 0.20 9.10 1.75 44.17 0.08 9.17 16 4 H 0.01 0.63 6.51 -2.39 -0.02 0.61 16 5 C -0.55 -30.20 9.07 25.60 0.23 -29.97 16 6 H 0.04 2.18 7.61 -2.91 -0.02 2.16 16 7 C 0.03 1.50 5.25 84.66 0.44 1.95 16 8 N -0.93 -56.99 13.96 21.45 0.30 -56.69 16 9 Si 0.92 42.04 25.83 68.60 1.77 43.81 16 10 H -0.27 -12.10 7.11 99.48 0.71 -11.39 16 11 H -0.29 -13.21 7.11 99.48 0.71 -12.51 16 12 H -0.22 -9.12 5.47 99.48 0.54 -8.58 16 13 N -0.67 -27.17 6.05 -499.47 -3.02 -30.19 16 14 C 0.15 4.80 5.78 85.56 0.49 5.29 16 15 C 0.20 6.16 7.62 138.13 1.05 7.21 16 16 N -0.51 -17.51 11.25 -188.13 -2.12 -19.62 16 17 C -0.06 -1.67 11.87 83.52 0.99 -0.67 16 18 C -0.04 -0.81 12.04 83.08 1.00 0.19 16 19 N -0.56 -13.10 6.15 -186.26 -1.15 -14.24 16 20 H 0.43 7.65 8.96 -92.71 -0.83 6.82 16 21 H 0.06 2.13 6.75 -2.39 -0.02 2.11 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 24 H 0.04 1.95 4.50 -2.39 -0.01 1.94 16 25 H 0.04 1.90 8.14 -2.38 -0.02 1.88 16 26 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 27 H 0.33 13.97 7.77 -89.69 -0.70 13.28 16 28 H 0.05 1.55 8.03 -2.39 -0.02 1.53 16 29 H 0.10 3.16 6.58 -2.39 -0.02 3.14 16 30 H 0.19 3.78 8.06 -2.91 -0.02 3.76 16 31 H 0.22 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -68.29 255.85 0.34 -67.95 By element: Atomic # 1 Polarization: 25.38 SS G_CDS: -0.55 Total: 24.84 kcal Atomic # 6 Polarization: -20.95 SS G_CDS: 5.10 Total: -15.85 kcal Atomic # 7 Polarization: -114.77 SS G_CDS: -5.98 Total: -120.75 kcal Atomic # 14 Polarization: 42.04 SS G_CDS: 1.77 Total: 43.81 kcal Total: -68.29 0.34 -67.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054184056.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.149 kcal (2) G-P(sol) polarization free energy of solvation -68.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.855 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.952 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds