Wall clock time and date at job start Sun Mar 29 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47002 * 2 1 4 4 C 1.36982 * 119.99615 * 262.09225 * 3 2 1 5 5 H 1.08005 * 120.00028 * 195.92134 * 4 3 2 6 6 C 1.38976 * 120.00480 * 15.92466 * 4 3 2 7 7 N 1.31414 * 119.99455 * 13.84121 * 6 4 3 8 8 Si 1.86794 * 120.00333 * 193.83626 * 6 4 3 9 9 H 1.48499 * 109.47186 * 90.00207 * 8 6 4 10 10 H 1.48500 * 109.47273 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47199 * 329.99895 * 8 6 4 12 12 C 1.34777 * 120.00414 * 82.10259 * 3 2 1 13 13 O 1.21624 * 120.00246 * 182.32704 * 12 3 2 14 14 C 1.47351 * 119.99676 * 2.31843 * 12 3 2 15 15 C 1.41329 * 126.42496 * 349.31042 * 14 12 3 16 16 N 1.30445 * 108.02703 * 179.69842 * 15 14 12 17 17 N 1.39933 * 108.91424 * 0.43895 * 16 15 14 18 18 H 0.96994 * 125.75241 * 179.81579 * 17 16 15 19 19 C 1.34283 * 108.49829 * 359.55024 * 17 16 15 20 20 H 1.08996 * 109.47280 * 59.99742 * 1 2 3 21 21 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46785 * 300.00486 * 1 2 3 23 23 H 1.09002 * 109.47145 * 239.99913 * 2 1 3 24 24 H 1.09004 * 109.47153 * 119.99973 * 2 1 3 25 25 H 0.96996 * 119.99928 * 180.02562 * 7 6 4 26 26 H 1.07997 * 125.98078 * 359.97438 * 15 14 12 27 27 H 1.07998 * 126.30062 * 180.23935 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4005 1.9725 -1.1751 5 1 2.9921 2.8759 -1.1576 6 6 2.0270 1.4099 -2.3898 7 7 1.0951 0.4841 -2.4261 8 14 2.8493 1.9700 -3.9707 9 1 4.0447 1.1285 -4.2318 10 1 1.8940 1.8366 -5.0998 11 1 3.2631 3.3899 -3.8374 12 6 2.0918 2.0701 1.1561 13 8 2.4569 3.2302 1.1506 14 6 1.7295 1.4177 2.4267 15 6 1.0944 0.1639 2.5750 16 7 0.9511 -0.0676 3.8507 17 7 1.4705 1.0149 4.5693 18 1 1.4871 1.0981 5.5356 19 6 1.9474 1.9166 3.6960 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.8346 0.0911 -3.2738 26 1 0.7862 -0.4901 1.7727 27 1 2.4149 2.8588 3.9409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000059882710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:50 Heat of formation + Delta-G solvation = 77.328072 kcal Electronic energy + Delta-G solvation = -13929.802959 eV Core-core repulsion = 11498.207182 eV Total energy + Delta-G solvation = -2431.595777 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -40.81980 -38.07520 -35.10972 -32.32362 -30.91291 -29.66461 -29.31337 -25.09214 -22.45793 -21.85052 -21.10783 -18.91989 -17.60672 -16.74704 -15.51112 -14.53805 -14.45267 -14.28006 -13.92809 -13.32498 -12.79303 -12.49437 -11.81853 -11.41227 -11.12143 -11.06557 -10.80732 -10.52982 -10.30873 -10.14379 -9.96353 -9.22484 -8.86907 -8.40014 -8.13432 -7.64088 -6.24790 -3.78043 2.13375 2.83558 3.19196 3.23777 3.28026 3.33648 4.15819 4.47573 4.89421 5.23488 5.32809 5.47870 5.86445 5.98406 6.18520 6.26718 6.59946 6.65310 6.80011 6.96626 7.35058 7.52597 7.54100 7.81266 7.98071 8.18226 8.58932 9.23731 9.49331 10.08597 10.72077 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054854 B = 0.010329 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.327224 B = 2710.122189 C = 3125.421663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.106 3.894 3 N -0.433 5.433 4 C -0.294 4.294 5 H 0.102 0.898 6 C 0.024 3.976 7 N -0.876 5.876 8 Si 0.928 3.072 9 H -0.279 1.279 10 H -0.285 1.285 11 H -0.270 1.270 12 C 0.514 3.486 13 O -0.601 6.601 14 C -0.251 4.251 15 C 0.050 3.950 16 N -0.316 5.316 17 N -0.479 5.479 18 H 0.435 0.565 19 C 0.096 3.904 20 H 0.098 0.902 21 H 0.041 0.959 22 H 0.032 0.968 23 H 0.106 0.894 24 H 0.045 0.955 25 H 0.266 0.734 26 H 0.219 0.781 27 H 0.183 0.817 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.211 -2.752 7.061 7.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C -0.018 4.018 3 N -0.150 5.150 4 C -0.422 4.422 5 H 0.120 0.880 6 C -0.177 4.177 7 N -0.517 5.517 8 Si 0.755 3.245 9 H -0.205 1.205 10 H -0.210 1.210 11 H -0.195 1.195 12 C 0.303 3.697 13 O -0.488 6.488 14 C -0.266 4.266 15 C -0.136 4.136 16 N -0.139 5.139 17 N -0.185 5.185 18 H 0.278 0.722 19 C -0.055 4.055 20 H 0.116 0.884 21 H 0.060 0.940 22 H 0.051 0.949 23 H 0.124 0.876 24 H 0.063 0.937 25 H 0.077 0.923 26 H 0.235 0.765 27 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -0.549 -3.130 7.697 8.327 hybrid contribution 0.541 0.757 -0.875 1.277 sum -0.008 -2.373 6.822 7.223 Atomic orbital electron populations 1.22370 0.96722 1.00120 1.02784 1.21909 0.94383 0.84193 1.01270 1.43541 1.54876 1.10987 1.05608 1.19779 1.29883 1.10471 0.82071 0.88007 1.25285 0.95926 0.97184 0.99337 1.70037 1.27250 1.27949 1.26440 0.85885 0.78722 0.79250 0.80620 1.20475 1.21043 1.19491 1.17001 0.84339 0.85710 0.82627 1.90576 1.54251 1.17022 1.86964 1.20751 1.12970 0.98164 0.94707 1.25737 0.96724 0.96825 0.94296 1.77054 1.22269 1.08658 1.05888 1.46105 1.48257 1.15189 1.08940 0.72222 1.22875 0.97613 0.95542 0.89440 0.88377 0.94004 0.94873 0.87586 0.93689 0.92341 0.76509 0.80038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.37 8.13 37.16 0.30 -3.07 15 2 C 0.11 2.36 4.78 -4.04 -0.02 2.34 15 3 N -0.43 -11.21 2.64 -116.04 -0.31 -11.52 15 4 C -0.29 -8.13 9.40 -14.98 -0.14 -8.27 15 5 H 0.10 2.96 7.33 -52.48 -0.38 2.58 15 6 C 0.02 0.63 5.09 -17.46 -0.09 0.54 15 7 N -0.88 -22.13 8.22 55.50 0.46 -21.68 15 8 Si 0.93 20.41 29.58 -169.99 -5.03 15.39 15 9 H -0.28 -6.04 7.11 56.52 0.40 -5.64 15 10 H -0.28 -6.18 7.11 56.52 0.40 -5.78 15 11 H -0.27 -6.03 7.11 56.52 0.40 -5.63 15 12 C 0.51 13.16 7.55 -12.55 -0.09 13.06 15 13 O -0.60 -17.16 16.56 5.26 0.09 -17.07 15 14 C -0.25 -5.26 5.89 -105.06 -0.62 -5.87 15 15 C 0.05 0.95 8.40 -16.97 -0.14 0.81 15 16 N -0.32 -5.53 12.63 30.87 0.39 -5.14 15 17 N -0.48 -6.95 7.29 30.87 0.22 -6.73 15 18 H 0.43 4.34 8.96 -182.73 -1.64 2.70 15 19 C 0.10 1.62 11.84 -16.53 -0.20 1.43 15 20 H 0.10 2.34 6.24 -51.93 -0.32 2.02 15 21 H 0.04 0.74 8.14 -51.93 -0.42 0.32 15 22 H 0.03 0.67 6.11 -51.93 -0.32 0.35 15 23 H 0.11 2.53 5.90 -51.93 -0.31 2.23 15 24 H 0.05 0.91 4.81 -51.93 -0.25 0.66 15 25 H 0.27 6.39 8.31 -40.82 -0.34 6.05 15 26 H 0.22 3.95 3.28 -52.49 -0.17 3.77 15 27 H 0.18 2.60 8.06 -52.49 -0.42 2.18 15 LS Contribution 226.45 15.07 3.41 3.41 Total: -1.00 -31.43 226.45 -5.13 -36.56 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -3.37 Total: 5.81 kcal Atomic # 6 Polarization: 1.97 SS G_CDS: -1.00 Total: 0.97 kcal Atomic # 7 Polarization: -45.83 SS G_CDS: 0.76 Total: -45.07 kcal Atomic # 8 Polarization: -17.16 SS G_CDS: 0.09 Total: -17.07 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -5.03 Total: 15.39 kcal Total LS contribution 3.41 Total: 3.41 kcal Total: -31.43 -5.13 -36.56 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059882710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.892 kcal (2) G-P(sol) polarization free energy of solvation -31.430 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.462 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.564 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.328 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds