Wall clock time and date at job start Sun Mar 29 2020 21:31:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46497 * 109.47002 * 2 1 4 4 C 1.36982 * 119.99615 * 262.09225 * 3 2 1 5 5 H 1.08005 * 120.00028 * 195.92134 * 4 3 2 6 6 C 1.38976 * 120.00480 * 15.92466 * 4 3 2 7 7 N 1.31414 * 119.99455 * 13.84121 * 6 4 3 8 8 Si 1.86794 * 120.00333 * 193.83626 * 6 4 3 9 9 H 1.48499 * 109.47186 * 90.00207 * 8 6 4 10 10 H 1.48500 * 109.47273 * 209.99840 * 8 6 4 11 11 H 1.48501 * 109.47199 * 329.99895 * 8 6 4 12 12 C 1.34777 * 120.00414 * 82.10259 * 3 2 1 13 13 O 1.21624 * 120.00246 * 182.32704 * 12 3 2 14 14 C 1.47351 * 119.99676 * 2.31843 * 12 3 2 15 15 C 1.41329 * 126.42496 * 349.31042 * 14 12 3 16 16 N 1.30445 * 108.02703 * 179.69842 * 15 14 12 17 17 N 1.39933 * 108.91424 * 0.43895 * 16 15 14 18 18 H 0.96994 * 125.75241 * 179.81579 * 17 16 15 19 19 C 1.34283 * 108.49829 * 359.55024 * 17 16 15 20 20 H 1.08996 * 109.47280 * 59.99742 * 1 2 3 21 21 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.46785 * 300.00486 * 1 2 3 23 23 H 1.09002 * 109.47145 * 239.99913 * 2 1 3 24 24 H 1.09004 * 109.47153 * 119.99973 * 2 1 3 25 25 H 0.96996 * 119.99928 * 180.02562 * 7 6 4 26 26 H 1.07997 * 125.98078 * 359.97438 * 15 14 12 27 27 H 1.07998 * 126.30062 * 180.23935 * 19 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.4005 1.9725 -1.1751 5 1 2.9921 2.8759 -1.1576 6 6 2.0270 1.4099 -2.3898 7 7 1.0951 0.4841 -2.4261 8 14 2.8493 1.9700 -3.9707 9 1 4.0447 1.1285 -4.2318 10 1 1.8940 1.8366 -5.0998 11 1 3.2631 3.3899 -3.8374 12 6 2.0918 2.0701 1.1561 13 8 2.4569 3.2302 1.1506 14 6 1.7295 1.4177 2.4267 15 6 1.0944 0.1639 2.5750 16 7 0.9511 -0.0676 3.8507 17 7 1.4705 1.0149 4.5693 18 1 1.4871 1.0981 5.5356 19 6 1.9474 1.9166 3.6960 20 1 -0.3633 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3633 0.5139 0.8900 23 1 1.8934 -0.5139 -0.8900 24 1 1.8934 -0.5138 0.8900 25 1 0.8346 0.0911 -3.2738 26 1 0.7862 -0.4901 1.7727 27 1 2.4149 2.8588 3.9409 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059882710.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:50 Heat of formation + Delta-G solvation = 54.788714 kcal Electronic energy + Delta-G solvation = -13930.780339 eV Core-core repulsion = 11498.207182 eV Total energy + Delta-G solvation = -2432.573157 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.27872 -39.92112 -37.06088 -34.13562 -32.55106 -31.30630 -30.92416 -27.01569 -24.20761 -23.44192 -22.65173 -20.51175 -19.25297 -18.62866 -17.25457 -16.28808 -16.09977 -15.89983 -15.74966 -15.03859 -14.52662 -14.11500 -13.63118 -13.17784 -12.86852 -12.81984 -12.55385 -12.15835 -12.06726 -11.92092 -11.74910 -10.85628 -10.57059 -10.34613 -9.69064 -9.56071 -8.20686 -5.83379 0.71659 1.25401 1.46817 1.50924 1.58160 1.97146 2.33371 2.61501 3.14680 3.26287 3.88225 4.07760 4.31811 4.43886 4.56894 4.78428 4.90881 4.91536 5.18574 5.44489 5.47419 5.56570 5.99315 6.18246 6.35876 6.58119 6.67728 7.24399 7.56029 8.14135 8.73519 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054854 B = 0.010329 C = 0.008957 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.327224 B = 2710.122189 C = 3125.421663 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.109 3.891 3 N -0.446 5.446 4 C -0.340 4.340 5 H 0.072 0.928 6 C -0.002 4.002 7 N -0.877 5.877 8 Si 0.990 3.010 9 H -0.268 1.268 10 H -0.273 1.273 11 H -0.280 1.280 12 C 0.503 3.497 13 O -0.647 6.647 14 C -0.296 4.296 15 C 0.052 3.948 16 N -0.318 5.318 17 N -0.449 5.449 18 H 0.459 0.541 19 C 0.126 3.874 20 H 0.066 0.934 21 H 0.073 0.927 22 H 0.036 0.964 23 H 0.088 0.912 24 H 0.070 0.930 25 H 0.273 0.727 26 H 0.221 0.779 27 H 0.209 0.791 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.510 -3.753 8.016 8.866 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.014 4.014 3 N -0.162 5.162 4 C -0.468 4.468 5 H 0.090 0.910 6 C -0.203 4.203 7 N -0.516 5.516 8 Si 0.814 3.186 9 H -0.194 1.194 10 H -0.198 1.198 11 H -0.205 1.205 12 C 0.294 3.706 13 O -0.537 6.537 14 C -0.311 4.311 15 C -0.134 4.134 16 N -0.140 5.140 17 N -0.157 5.157 18 H 0.307 0.693 19 C -0.028 4.028 20 H 0.084 0.916 21 H 0.092 0.908 22 H 0.054 0.946 23 H 0.106 0.894 24 H 0.088 0.912 25 H 0.083 0.917 26 H 0.237 0.763 27 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -0.880 -4.194 8.695 9.693 hybrid contribution 0.609 1.062 -1.065 1.623 sum -0.271 -3.133 7.629 8.252 Atomic orbital electron populations 1.22193 0.95526 1.01695 1.01264 1.21984 0.95274 0.82571 1.01532 1.43757 1.54951 1.12151 1.05369 1.19675 1.32129 1.11088 0.83922 0.90983 1.25963 0.95946 0.97032 1.01387 1.70132 1.26604 1.27461 1.27432 0.84985 0.78209 0.78292 0.77109 1.19373 1.19812 1.20499 1.17681 0.83451 0.85456 0.84041 1.90515 1.56331 1.19001 1.87898 1.20504 1.16660 0.99926 0.94029 1.25626 0.96685 0.96140 0.94969 1.77029 1.22357 1.09421 1.05234 1.46094 1.45989 1.13648 1.09991 0.69319 1.23175 0.95310 0.95918 0.88360 0.91565 0.90789 0.94559 0.89391 0.91196 0.91720 0.76284 0.77444 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -6.08 8.13 71.98 0.59 -5.49 15 2 C 0.11 4.86 4.78 86.38 0.41 5.27 15 3 N -0.45 -23.68 2.64 -639.30 -1.69 -25.37 15 4 C -0.34 -19.52 9.40 84.07 0.79 -18.73 15 5 H 0.07 4.45 7.33 -2.91 -0.02 4.43 15 6 C 0.00 -0.08 5.09 84.93 0.43 0.35 15 7 N -0.88 -44.28 8.22 21.67 0.18 -44.10 15 8 Si 0.99 42.12 29.58 68.60 2.03 44.14 15 9 H -0.27 -10.95 7.11 99.48 0.71 -10.25 15 10 H -0.27 -11.06 7.11 99.48 0.71 -10.35 15 11 H -0.28 -12.27 7.11 99.48 0.71 -11.56 15 12 C 0.50 26.28 7.55 86.64 0.65 26.94 15 13 O -0.65 -38.23 16.56 -4.11 -0.07 -38.30 15 14 C -0.30 -12.10 5.89 -20.15 -0.12 -12.22 15 15 C 0.05 1.86 8.40 85.66 0.72 2.58 15 16 N -0.32 -10.14 12.63 -56.25 -0.71 -10.85 15 17 N -0.45 -11.40 7.29 -56.26 -0.41 -11.81 15 18 H 0.46 7.14 8.96 -213.43 -1.91 5.22 15 19 C 0.13 3.91 11.84 84.29 1.00 4.91 15 20 H 0.07 3.16 6.24 -2.39 -0.01 3.14 15 21 H 0.07 2.49 8.14 -2.39 -0.02 2.47 15 22 H 0.04 1.44 6.11 -2.39 -0.01 1.42 15 23 H 0.09 4.21 5.90 -2.39 -0.01 4.20 15 24 H 0.07 2.75 4.81 -2.38 -0.01 2.74 15 25 H 0.27 12.87 8.31 -92.71 -0.77 12.10 15 26 H 0.22 7.57 3.28 -2.91 -0.01 7.56 15 27 H 0.21 5.33 8.06 -2.91 -0.02 5.30 15 Total: -1.00 -69.36 226.45 3.11 -66.25 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -0.69 Total: 16.43 kcal Atomic # 6 Polarization: -0.87 SS G_CDS: 4.47 Total: 3.61 kcal Atomic # 7 Polarization: -89.50 SS G_CDS: -2.63 Total: -92.13 kcal Atomic # 8 Polarization: -38.23 SS G_CDS: -0.07 Total: -38.30 kcal Atomic # 14 Polarization: 42.12 SS G_CDS: 2.03 Total: 44.14 kcal Total: -69.36 3.11 -66.25 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059882710.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 121.034 kcal (2) G-P(sol) polarization free energy of solvation -69.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.678 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds