Wall clock time and date at job start Sun Mar 29 2020 21:31:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46729 * 2 1 4 4 C 1.36839 * 119.99873 * 98.99737 * 3 2 1 5 5 H 1.08004 * 120.00229 * 162.87773 * 4 3 2 6 6 C 1.39054 * 119.99982 * 343.14570 * 4 3 2 7 7 N 1.31361 * 120.00116 * 338.17912 * 6 4 3 8 8 Si 1.86803 * 119.99957 * 158.17214 * 6 4 3 9 9 H 1.48501 * 109.46970 * 0.02562 * 8 6 4 10 10 H 1.48504 * 109.46756 * 120.00326 * 8 6 4 11 11 H 1.48493 * 109.47481 * 240.00409 * 8 6 4 12 12 C 1.34778 * 120.00231 * 278.99621 * 3 2 1 13 13 O 1.21670 * 120.00005 * 178.03828 * 12 3 2 14 14 C 1.47022 * 119.99857 * 358.03861 * 12 3 2 15 15 C 1.38524 * 126.89683 * 189.19754 * 14 12 3 16 16 C 1.39641 * 105.34930 * 179.97438 * 15 14 12 17 17 N 1.30883 * 107.88116 * 0.02562 * 16 15 14 18 18 N 1.28443 * 110.94908 * 359.74977 * 17 16 15 19 19 H 0.96996 * 125.18919 * 180.23701 * 18 17 16 20 20 H 1.08997 * 109.47508 * 299.99579 * 1 2 3 21 21 H 1.09004 * 109.47158 * 60.00193 * 1 2 3 22 22 H 1.09003 * 109.46787 * 179.97438 * 1 2 3 23 23 H 1.09003 * 109.47123 * 240.00643 * 2 1 3 24 24 H 1.08991 * 109.47477 * 119.99872 * 2 1 3 25 25 H 0.97004 * 119.99984 * 179.97438 * 7 6 4 26 26 H 1.07992 * 127.32246 * 359.94508 * 15 14 12 27 27 H 1.08000 * 126.05662 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.4210 1.9646 1.1705 5 1 3.0285 2.8573 1.1480 6 6 2.0528 1.4048 2.3890 7 7 1.0080 0.6116 2.4584 8 14 3.0441 1.7806 3.9270 9 1 4.1634 2.6941 3.5836 10 1 2.1673 2.4296 4.9347 11 1 3.5892 0.5173 4.4856 12 6 2.0708 2.0775 -1.1528 13 8 2.4425 3.2361 -1.1474 14 6 1.6790 1.4371 -2.4169 15 6 1.8418 1.9486 -3.6938 16 6 1.3181 0.9780 -4.5504 17 7 0.8869 -0.0158 -3.8159 18 7 1.0855 0.2155 -2.5681 19 1 0.8482 -0.3844 -1.8438 20 1 -0.3634 0.5137 0.8900 21 1 -0.3634 0.5138 -0.8900 22 1 -0.3633 -1.0277 -0.0005 23 1 1.8934 -0.5137 -0.8901 24 1 1.8934 -0.5138 0.8899 25 1 0.7514 0.2208 3.3084 26 1 2.2800 2.8967 -3.9685 27 1 1.2764 1.0369 -5.6280 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000059882715.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:47 Heat of formation + Delta-G solvation = 55.052836 kcal Electronic energy + Delta-G solvation = -14010.977075 eV Core-core repulsion = 11578.415371 eV Total energy + Delta-G solvation = -2432.561704 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.49864 -40.27228 -37.37277 -34.34744 -32.67180 -31.67579 -31.16462 -27.28769 -24.61516 -23.56079 -22.84620 -21.49484 -19.34806 -18.58996 -17.48274 -16.63400 -16.55135 -16.01974 -15.42705 -15.22708 -14.62850 -14.15684 -14.05206 -13.86278 -13.34238 -12.96696 -12.81031 -12.34222 -12.15656 -11.96711 -11.82965 -11.07557 -10.69353 -10.28114 -10.06181 -9.81808 -8.45157 -6.01278 0.39300 1.39060 1.43742 1.56581 1.75285 1.99545 2.24253 2.33051 2.83104 3.00366 3.65578 3.92712 3.95674 4.36804 4.46408 4.50624 4.62730 4.85062 5.04768 5.12395 5.33526 5.61926 5.76259 5.90132 6.08526 6.38565 7.00330 7.08934 7.24498 7.81773 8.53066 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.054854 B = 0.010494 C = 0.009136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 510.321967 B = 2667.639406 C = 3064.033641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.106 3.894 3 N -0.433 5.433 4 C -0.351 4.351 5 H 0.079 0.921 6 C 0.010 3.990 7 N -0.865 5.865 8 Si 0.991 3.009 9 H -0.276 1.276 10 H -0.274 1.274 11 H -0.263 1.263 12 C 0.486 3.514 13 O -0.621 6.621 14 C -0.026 4.026 15 C -0.190 4.190 16 C 0.008 3.992 17 N -0.304 5.304 18 N -0.389 5.389 19 H 0.453 0.547 20 H 0.087 0.913 21 H 0.030 0.970 22 H 0.085 0.915 23 H 0.059 0.941 24 H 0.097 0.903 25 H 0.280 0.720 26 H 0.164 0.836 27 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.879 -5.282 -4.937 7.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.018 4.018 3 N -0.150 5.150 4 C -0.478 4.478 5 H 0.097 0.903 6 C -0.195 4.195 7 N -0.502 5.502 8 Si 0.814 3.186 9 H -0.201 1.201 10 H -0.200 1.200 11 H -0.187 1.187 12 C 0.275 3.725 13 O -0.508 6.508 14 C -0.155 4.155 15 C -0.220 4.220 16 C -0.169 4.169 17 N -0.137 5.137 18 N -0.116 5.116 19 H 0.310 0.690 20 H 0.106 0.894 21 H 0.049 0.951 22 H 0.104 0.896 23 H 0.076 0.924 24 H 0.115 0.885 25 H 0.091 0.909 26 H 0.182 0.818 27 H 0.243 0.757 Dipole moment (debyes) X Y Z Total from point charges -1.328 -5.930 -4.788 7.736 hybrid contribution 0.603 0.863 1.238 1.625 sum -0.725 -5.066 -3.550 6.229 Atomic orbital electron populations 1.22399 0.94664 1.02949 1.02593 1.21790 0.95839 0.82759 1.01384 1.43901 1.53465 1.11543 1.06061 1.19720 1.31694 1.13099 0.83330 0.90349 1.26043 0.95869 0.96340 1.01234 1.70027 1.20936 1.31115 1.28112 0.84922 0.78208 0.78634 0.76813 1.20080 1.19990 1.18713 1.17321 0.85994 0.85959 0.83193 1.90596 1.55434 1.18179 1.86599 1.22005 1.06789 0.90049 0.96687 1.22360 1.07017 1.02860 0.89759 1.24160 1.00975 0.89942 1.01815 1.73058 1.22383 1.27545 0.90685 1.45374 1.44336 1.14772 1.07148 0.68960 0.89401 0.95100 0.89606 0.92392 0.88471 0.90926 0.81842 0.75734 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -6.42 8.39 71.98 0.60 -5.82 15 2 C 0.11 4.43 4.81 86.38 0.42 4.85 15 3 N -0.43 -22.18 2.64 -639.69 -1.69 -23.87 15 4 C -0.35 -19.30 9.32 84.11 0.78 -18.52 15 5 H 0.08 4.68 7.39 -2.91 -0.02 4.66 15 6 C 0.01 0.48 4.86 84.96 0.41 0.89 15 7 N -0.87 -41.09 8.65 21.68 0.19 -40.90 15 8 Si 0.99 39.63 29.61 68.60 2.03 41.66 15 9 H -0.28 -11.45 7.11 99.48 0.71 -10.75 15 10 H -0.27 -10.72 7.11 99.48 0.71 -10.01 15 11 H -0.26 -9.80 7.11 99.48 0.71 -9.09 15 12 C 0.49 25.37 7.53 86.55 0.65 26.02 15 13 O -0.62 -36.88 16.58 -4.25 -0.07 -36.96 15 14 C -0.03 -1.13 6.49 40.77 0.26 -0.86 15 15 C -0.19 -6.93 10.86 22.68 0.25 -6.68 15 16 C 0.01 0.25 12.03 85.17 1.02 1.28 15 17 N -0.30 -10.17 12.14 -57.15 -0.69 -10.87 15 18 N -0.39 -14.23 5.07 -48.00 -0.24 -14.47 15 19 H 0.45 15.36 3.53 -220.01 -0.78 14.59 15 20 H 0.09 3.93 6.01 -2.39 -0.01 3.92 15 21 H 0.03 1.17 6.31 -2.38 -0.02 1.15 15 22 H 0.09 2.61 8.14 -2.39 -0.02 2.59 15 23 H 0.06 2.15 5.21 -2.39 -0.01 2.14 15 24 H 0.10 4.26 6.18 -2.39 -0.01 4.24 15 25 H 0.28 12.28 8.31 -92.71 -0.77 11.51 15 26 H 0.16 5.57 8.06 -2.91 -0.02 5.55 15 27 H 0.23 4.30 8.06 -2.91 -0.02 4.28 15 Total: -1.00 -63.83 227.49 4.35 -59.48 By element: Atomic # 1 Polarization: 24.34 SS G_CDS: 0.43 Total: 24.77 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: 4.40 Total: 1.15 kcal Atomic # 7 Polarization: -87.67 SS G_CDS: -2.44 Total: -90.11 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.07 Total: -36.96 kcal Atomic # 14 Polarization: 39.63 SS G_CDS: 2.03 Total: 41.66 kcal Total: -63.83 4.35 -59.48 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000059882715.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.533 kcal (2) G-P(sol) polarization free energy of solvation -63.834 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.481 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds