Wall clock time and date at job start Sun Mar 29 2020 21:31:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 C 1.50698 * 109.47184 * 119.99962 * 2 1 3 5 5 H 1.08004 * 119.99528 * 119.99911 * 4 2 1 6 6 C 1.37876 * 120.00356 * 300.00710 * 4 2 1 7 7 N 1.31518 * 119.99554 * 359.97438 * 6 4 2 8 8 Si 1.86790 * 120.00086 * 179.97438 * 6 4 2 9 9 H 1.48502 * 109.47245 * 89.99579 * 8 6 4 10 10 H 1.48501 * 109.47356 * 209.99508 * 8 6 4 11 11 H 1.48499 * 109.47321 * 329.99647 * 8 6 4 12 12 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 13 13 C 1.34770 * 120.00256 * 84.99846 * 12 2 1 14 14 O 1.21633 * 120.00036 * 359.97438 * 13 12 2 15 15 C 1.47170 * 120.00007 * 180.02562 * 13 12 2 16 16 C 1.38403 * 126.88324 * 179.97438 * 15 13 12 17 17 C 1.39669 * 105.36088 * 180.02562 * 16 15 13 18 18 N 1.30871 * 107.85846 * 359.97438 * 17 16 15 19 19 N 1.28438 * 110.92797 * 359.71754 * 18 17 16 20 20 H 0.97001 * 125.19629 * 180.27616 * 19 18 17 21 21 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 22 22 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 23 23 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 24 24 H 0.97005 * 119.99198 * 180.02562 * 7 6 4 25 25 H 0.97005 * 119.99374 * 264.99912 * 12 2 1 26 26 H 1.08003 * 127.31923 * 0.02562 * 16 15 13 27 27 H 1.07997 * 126.07342 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6533 -1.5885 1.1313 6 6 1.6993 -0.2395 2.4827 7 7 0.9434 0.8300 2.6034 8 14 2.3214 -1.1205 4.0078 9 1 3.6297 -0.5460 4.4123 10 1 1.3431 -0.9495 5.1120 11 1 2.4859 -2.5663 3.7118 12 7 2.0184 -0.6905 -1.1962 13 6 2.1471 -0.0181 -2.3571 14 8 1.8574 1.1620 -2.4118 15 6 2.6372 -0.7119 -3.5589 16 6 2.8226 -0.1645 -4.8165 17 6 3.2969 -1.2118 -5.6096 18 7 3.3769 -2.2801 -4.8578 19 7 3.0061 -2.0236 -3.6552 20 1 2.9877 -2.6643 -2.9271 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3633 0.5138 0.8899 23 1 -0.3633 0.5139 -0.8900 24 1 0.7094 1.1615 3.4845 25 1 2.2491 -1.6317 -1.1527 26 1 2.6394 0.8556 -5.1201 27 1 3.5531 -1.1508 -6.6570 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060028453.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:31:16 Heat of formation + Delta-G solvation = 6.920308 kcal Electronic energy + Delta-G solvation = -13291.475717 eV Core-core repulsion = 10856.826830 eV Total energy + Delta-G solvation = -2434.648887 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.46056 -40.38071 -36.84030 -34.50313 -32.70842 -32.11745 -30.46240 -27.37750 -24.99415 -23.04590 -22.28025 -21.44344 -20.32125 -18.23358 -17.24015 -16.79638 -16.70271 -16.18414 -15.50787 -15.20374 -14.65462 -14.41817 -14.24170 -13.73176 -13.03891 -12.92761 -12.80588 -12.30122 -12.18257 -11.94446 -11.16944 -11.09665 -10.63554 -10.43246 -10.22357 -9.84910 -8.20343 -6.38302 0.23872 1.45194 1.45390 1.55927 1.66525 1.85272 2.22762 2.25142 2.47163 3.10809 3.74386 3.84318 4.28696 4.53774 4.71682 4.88360 4.97670 5.03999 5.35149 5.47899 5.52071 5.61491 5.80623 6.00446 6.04354 6.65634 6.74214 6.99237 7.20020 7.36991 8.86103 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.055288 B = 0.007455 C = 0.006844 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.316332 B = 3754.811369 C = 4090.184743 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.269 3.731 3 H 0.005 0.995 4 C -0.549 4.549 5 H 0.075 0.925 6 C 0.016 3.984 7 N -0.915 5.915 8 Si 0.973 3.027 9 H -0.279 1.279 10 H -0.284 1.284 11 H -0.259 1.259 12 N -0.697 5.697 13 C 0.575 3.425 14 O -0.578 6.578 15 C -0.046 4.046 16 C -0.167 4.167 17 C 0.005 3.995 18 N -0.284 5.284 19 N -0.369 5.369 20 H 0.454 0.546 21 H 0.042 0.958 22 H 0.070 0.930 23 H 0.014 0.986 24 H 0.266 0.734 25 H 0.402 0.598 26 H 0.169 0.831 27 H 0.226 0.774 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.718 -7.060 -10.380 13.092 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.167 3.833 3 H 0.023 0.977 4 C -0.588 4.588 5 H 0.093 0.907 6 C -0.184 4.184 7 N -0.553 5.553 8 Si 0.798 3.202 9 H -0.204 1.204 10 H -0.210 1.210 11 H -0.183 1.183 12 N -0.345 5.345 13 C 0.361 3.639 14 O -0.457 6.457 15 C -0.175 4.175 16 C -0.197 4.197 17 C -0.172 4.172 18 N -0.117 5.117 19 N -0.087 5.087 20 H 0.301 0.699 21 H 0.061 0.939 22 H 0.088 0.912 23 H 0.033 0.967 24 H 0.076 0.924 25 H 0.237 0.763 26 H 0.187 0.813 27 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges 3.700 -7.210 -10.259 13.073 hybrid contribution -0.082 0.181 1.404 1.418 sum 3.618 -7.029 -8.855 11.870 Atomic orbital electron populations 1.21921 0.97921 0.99710 0.99898 1.18471 0.91395 0.92203 0.81269 0.97670 1.21504 1.32883 1.13770 0.90596 0.90652 1.25784 0.94766 0.95568 1.02299 1.70047 1.36724 1.23811 1.24751 0.85322 0.77722 0.79183 0.77971 1.20449 1.20994 1.18318 1.46195 1.64761 1.13944 1.09611 1.17474 0.77910 0.86093 0.82472 1.90774 1.52996 1.16848 1.85126 1.21751 1.11225 0.87348 0.97153 1.22483 1.04204 1.02234 0.90736 1.24218 1.03366 0.87502 1.02086 1.73148 1.18810 1.28113 0.91619 1.43699 1.47039 1.08267 1.09716 0.69892 0.93908 0.91157 0.96693 0.92430 0.76321 0.81325 0.75783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.72 9.26 71.98 0.67 -6.05 15 2 C 0.27 13.63 2.56 44.25 0.11 13.74 15 3 H 0.01 0.32 7.58 -2.39 -0.02 0.30 15 4 C -0.55 -28.15 8.73 25.60 0.22 -27.92 15 5 H 0.08 3.56 7.74 -2.91 -0.02 3.53 15 6 C 0.02 0.86 5.30 84.65 0.45 1.30 15 7 N -0.92 -51.36 11.32 21.45 0.24 -51.12 15 8 Si 0.97 40.89 29.54 68.60 2.03 42.92 15 9 H -0.28 -11.63 7.11 99.48 0.71 -10.92 15 10 H -0.28 -11.86 7.11 99.48 0.71 -11.16 15 11 H -0.26 -10.21 7.11 99.48 0.71 -9.50 15 12 N -0.70 -28.05 5.07 -449.62 -2.28 -30.33 15 13 C 0.58 23.23 7.77 86.59 0.67 23.90 15 14 O -0.58 -28.36 16.58 -4.13 -0.07 -28.43 15 15 C -0.05 -1.43 7.16 40.79 0.29 -1.14 15 16 C -0.17 -4.53 10.85 22.66 0.25 -4.28 15 17 C 0.01 0.11 12.03 85.18 1.02 1.14 15 18 N -0.28 -6.94 12.14 -57.14 -0.69 -7.64 15 19 N -0.37 -9.23 6.85 -47.99 -0.33 -9.56 15 20 H 0.45 8.84 8.22 -220.01 -1.81 7.04 15 21 H 0.04 1.93 8.14 -2.39 -0.02 1.91 15 22 H 0.07 3.81 6.07 -2.39 -0.01 3.80 15 23 H 0.01 0.69 8.14 -2.39 -0.02 0.67 15 24 H 0.27 14.15 8.31 -92.70 -0.77 13.38 15 25 H 0.40 13.08 7.72 -92.70 -0.72 12.36 15 26 H 0.17 4.26 8.06 -2.91 -0.02 4.24 15 27 H 0.23 2.84 8.06 -2.91 -0.02 2.81 15 Total: -1.00 -66.27 244.51 1.27 -65.00 By element: Atomic # 1 Polarization: 19.79 SS G_CDS: -1.32 Total: 18.47 kcal Atomic # 6 Polarization: -3.00 SS G_CDS: 3.69 Total: 0.69 kcal Atomic # 7 Polarization: -95.59 SS G_CDS: -3.06 Total: -98.65 kcal Atomic # 8 Polarization: -28.36 SS G_CDS: -0.07 Total: -28.43 kcal Atomic # 14 Polarization: 40.89 SS G_CDS: 2.03 Total: 42.92 kcal Total: -66.27 1.27 -65.00 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060028453.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.919 kcal (2) G-P(sol) polarization free energy of solvation -66.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.999 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.920 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds