Wall clock time and date at job start Sun Mar 29 2020 22:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86801 * 119.99898 * 2 1 4 4 H 1.48500 * 109.47044 * 269.99960 * 3 2 1 5 5 H 1.48495 * 109.47371 * 30.00407 * 3 2 1 6 6 H 1.48499 * 109.47000 * 150.00155 * 3 2 1 7 7 C 1.38812 * 119.99660 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99402 * 197.41684 * 7 2 1 9 9 N 1.36925 * 120.00290 * 17.41143 * 7 2 1 10 10 C 1.46921 * 120.61941 * 27.82072 * 9 7 2 11 11 C 1.53244 * 108.76086 * 125.96143 * 10 9 7 12 12 C 1.52712 * 109.38972 * 54.05551 * 11 10 9 13 13 C 1.53595 * 110.00244 * 61.23526 * 12 11 10 14 14 C 1.54338 * 106.50114 * 119.01379 * 13 12 11 15 15 C 1.54919 * 104.20287 * 23.56817 * 14 13 12 16 16 C 1.54017 * 109.73891 * 178.54346 * 12 11 10 17 17 C 1.52706 * 110.43583 * 299.64090 * 12 11 10 18 18 C 1.46939 * 120.61812 * 207.80103 * 9 7 2 19 19 H 0.97001 * 119.99799 * 359.97438 * 1 2 3 20 20 H 1.08999 * 109.59282 * 245.74715 * 10 9 7 21 21 H 1.09000 * 109.58863 * 6.18492 * 10 9 7 22 22 H 1.08996 * 109.48213 * 174.03448 * 11 10 9 23 23 H 1.08997 * 109.48484 * 294.08288 * 11 10 9 24 24 H 1.08998 * 110.05309 * 238.26989 * 13 12 11 25 25 H 1.09005 * 110.04928 * 359.75105 * 13 12 11 26 26 H 1.09003 * 110.48390 * 264.89110 * 14 13 12 27 27 H 1.09004 * 110.48870 * 142.24771 * 14 13 12 28 28 H 1.08999 * 110.75405 * 203.88401 * 15 14 13 29 29 H 1.08997 * 110.74986 * 80.52232 * 15 14 13 30 30 H 1.09004 * 110.49785 * 335.96075 * 16 12 11 31 31 H 1.08994 * 110.49681 * 98.50582 * 16 12 11 32 32 H 1.08997 * 109.48947 * 300.39880 * 17 12 11 33 33 H 1.09006 * 109.49494 * 180.36013 * 17 12 11 34 34 H 1.08996 * 109.58791 * 353.82555 * 18 9 7 35 35 H 1.09002 * 109.59146 * 114.12218 * 18 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4477 2.6527 0.7001 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2022 -0.0005 8 1 3.0531 -1.2237 0.2794 9 7 1.3726 -2.3607 -0.3559 10 6 0.2309 -2.3333 -1.2801 11 6 0.5117 -3.2958 -2.4391 12 6 0.8472 -4.6771 -1.8809 13 6 -0.3440 -5.2236 -1.0800 14 6 -0.7840 -6.5257 -1.7823 15 6 0.4818 -6.9936 -2.5432 16 6 1.0953 -5.6603 -3.0402 17 6 2.0861 -4.6061 -0.9910 18 6 1.8178 -3.6545 0.1797 19 1 -0.4850 0.8401 0.0004 20 1 -0.6717 -2.6465 -0.7555 21 1 0.0988 -1.3232 -1.6679 22 1 -0.3702 -3.3652 -3.0758 23 1 1.3540 -2.9254 -3.0233 24 1 -0.0393 -5.4364 -0.0553 25 1 -1.1607 -4.5017 -1.0853 26 1 -1.5970 -6.3265 -2.4805 27 1 -1.0852 -7.2724 -1.0475 28 1 0.2126 -7.6321 -3.3845 29 1 1.1685 -7.5077 -1.8708 30 1 0.5891 -5.3206 -3.9438 31 1 2.1639 -5.7739 -3.2222 32 1 2.9311 -4.2376 -1.5727 33 1 2.3153 -5.6000 -0.6065 34 1 2.7329 -3.5163 0.7555 35 1 1.0414 -4.0710 0.8216 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062953857.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:32 Heat of formation + Delta-G solvation = -2.300822 kcal Electronic energy + Delta-G solvation = -14695.527267 eV Core-core repulsion = 12499.851960 eV Total energy + Delta-G solvation = -2195.675307 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -39.26804 -35.42480 -32.25403 -30.26194 -29.56565 -28.39142 -25.56811 -23.25864 -22.13317 -20.81534 -19.94119 -17.69687 -16.34579 -15.26228 -14.87324 -14.53137 -13.77703 -13.53899 -13.05455 -12.82391 -12.66221 -12.27391 -11.63627 -11.21164 -10.93813 -10.83362 -10.77261 -10.67520 -10.59315 -10.20997 -10.17012 -10.06243 -9.98984 -9.68232 -9.30121 -9.16050 -8.38058 -6.56958 -5.71947 -3.13364 3.41363 3.48020 3.49268 4.55204 4.95356 5.02892 5.11265 5.43898 5.57995 5.66937 5.79987 5.80462 5.92557 5.94633 6.06972 6.14885 6.19776 6.26683 6.36082 6.38282 6.48565 6.56227 6.63250 6.70572 6.77276 6.90252 7.02248 7.07053 7.13627 7.49543 7.76388 7.86088 8.52710 9.29180 9.93439 10.50973 11.36125 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.062500 B = 0.008663 C = 0.008443 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.895024 B = 3231.222271 C = 3315.454632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.000 4.000 3 Si 0.901 3.099 4 H -0.288 1.288 5 H -0.292 1.292 6 H -0.280 1.280 7 C -0.249 4.249 8 H 0.064 0.936 9 N -0.591 5.591 10 C 0.171 3.829 11 C -0.129 4.129 12 C -0.051 4.051 13 C -0.114 4.114 14 C -0.124 4.124 15 C -0.123 4.123 16 C -0.117 4.117 17 C -0.118 4.118 18 C 0.144 3.856 19 H 0.252 0.748 20 H 0.019 0.981 21 H 0.084 0.916 22 H 0.046 0.954 23 H 0.051 0.949 24 H 0.063 0.937 25 H 0.067 0.933 26 H 0.059 0.941 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.058 0.942 32 H 0.054 0.946 33 H 0.047 0.953 34 H 0.049 0.951 35 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.225 -10.848 -4.518 11.753 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.198 4.198 3 Si 0.731 3.269 4 H -0.215 1.215 5 H -0.218 1.218 6 H -0.205 1.205 7 C -0.379 4.379 8 H 0.082 0.918 9 N -0.314 5.314 10 C 0.045 3.955 11 C -0.168 4.168 12 C -0.051 4.051 13 C -0.152 4.152 14 C -0.162 4.162 15 C -0.160 4.160 16 C -0.155 4.155 17 C -0.158 4.158 18 C 0.018 3.982 19 H 0.062 0.938 20 H 0.037 0.963 21 H 0.102 0.898 22 H 0.064 0.936 23 H 0.070 0.930 24 H 0.081 0.919 25 H 0.085 0.915 26 H 0.078 0.922 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.080 0.920 30 H 0.078 0.922 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.067 0.933 35 H 0.036 0.964 Dipole moment (debyes) X Y Z Total from point charges 0.123 -10.686 -4.484 11.589 hybrid contribution 0.408 0.893 -0.025 0.982 sum 0.531 -9.793 -4.509 10.794 Atomic orbital electron populations 1.70044 1.05223 1.25316 1.54219 1.25020 0.95269 0.98319 1.01207 0.86305 0.79115 0.83827 0.77640 1.21539 1.21822 1.20498 1.19213 0.92683 0.85060 1.40967 0.91821 1.44024 1.36097 1.01290 1.50009 1.20811 0.88640 0.98158 0.87896 1.22225 0.99605 0.95349 0.99619 1.20802 0.95061 0.94994 0.94214 1.22271 0.98054 0.95888 0.98954 1.22389 0.97343 0.97557 0.98880 1.22476 0.97274 0.97175 0.99114 1.22514 0.99999 0.94828 0.98144 1.22027 0.96699 0.98567 0.98474 1.20940 0.97245 0.87066 0.92938 0.93758 0.96341 0.89799 0.93566 0.93026 0.91862 0.91462 0.92247 0.92491 0.92528 0.91961 0.92155 0.92282 0.92700 0.93432 0.93262 0.96407 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.73 11.19 55.49 0.62 -26.11 16 2 C 0.00 0.00 4.91 -17.43 -0.09 -0.08 16 3 Si 0.90 22.12 29.59 -169.99 -5.03 17.09 16 4 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 5 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 6 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 7 C -0.25 -7.03 9.58 -15.06 -0.14 -7.18 16 8 H 0.06 1.77 7.89 -52.49 -0.41 1.35 16 9 N -0.59 -15.24 2.99 -172.26 -0.51 -15.75 16 10 C 0.17 4.17 4.99 -3.69 -0.02 4.15 16 11 C -0.13 -2.56 4.60 -26.75 -0.12 -2.69 16 12 C -0.05 -0.87 0.62 -153.97 -0.09 -0.97 16 13 C -0.11 -1.89 5.16 -25.72 -0.13 -2.02 16 14 C -0.12 -1.67 6.84 -25.02 -0.17 -1.84 16 15 C -0.12 -1.56 6.91 -24.69 -0.17 -1.74 16 16 C -0.12 -1.71 5.89 -25.17 -0.15 -1.85 16 17 C -0.12 -2.16 4.58 -26.76 -0.12 -2.28 16 18 C 0.14 3.14 6.18 -3.68 -0.02 3.12 16 19 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 20 H 0.02 0.47 6.73 -51.93 -0.35 0.12 16 21 H 0.08 2.31 6.02 -51.93 -0.31 2.00 16 22 H 0.05 0.85 8.13 -51.93 -0.42 0.42 16 23 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 24 H 0.06 1.07 6.41 -51.93 -0.33 0.74 16 25 H 0.07 1.21 6.40 -51.93 -0.33 0.87 16 26 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 30 H 0.06 0.86 7.83 -51.93 -0.41 0.45 16 31 H 0.06 0.83 7.82 -51.93 -0.41 0.43 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 34 H 0.05 1.06 7.93 -51.93 -0.41 0.64 16 35 H 0.02 0.39 6.74 -51.93 -0.35 0.04 16 LS Contribution 262.53 15.07 3.96 3.96 Total: -1.00 -29.21 262.53 -8.03 -37.24 By element: Atomic # 1 Polarization: 2.77 SS G_CDS: -5.83 Total: -3.06 kcal Atomic # 6 Polarization: -12.14 SS G_CDS: -1.23 Total: -13.37 kcal Atomic # 7 Polarization: -41.96 SS G_CDS: 0.11 Total: -41.86 kcal Atomic # 14 Polarization: 22.12 SS G_CDS: -5.03 Total: 17.09 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -29.21 -8.03 -37.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062953857.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.940 kcal (2) G-P(sol) polarization free energy of solvation -29.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.033 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.301 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds