Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 H 1.09005 * 109.47036 * 185.17689 * 3 2 1 5 5 C 1.50696 * 109.47363 * 305.18117 * 3 2 1 6 6 H 1.08001 * 119.99889 * 119.99528 * 5 3 2 7 7 C 1.37882 * 120.00006 * 300.00119 * 5 3 2 8 8 N 1.31511 * 120.00120 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99872 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47179 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.47105 * 210.00365 * 9 7 5 12 12 H 1.48502 * 109.47201 * 329.99832 * 9 7 5 13 13 N 1.46896 * 109.46963 * 65.18299 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89931 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.41387 * 126.57863 * 90.00354 * 15 14 13 17 17 C 1.34508 * 106.84041 * 179.97438 * 16 15 14 18 18 O 1.34304 * 108.42290 * 359.97438 * 17 16 15 19 19 C 1.34307 * 109.47443 * 359.77399 * 18 17 16 20 20 H 1.09003 * 109.46734 * 294.85059 * 1 2 3 21 21 H 1.09000 * 109.47036 * 174.85705 * 1 2 3 22 22 H 1.08998 * 109.47151 * 54.84694 * 1 2 3 23 23 H 1.08996 * 109.47426 * 120.00419 * 2 1 3 24 24 H 1.09000 * 109.47198 * 240.00421 * 2 1 3 25 25 H 0.96995 * 120.00536 * 179.97438 * 8 7 5 26 26 H 1.00902 * 110.99920 * 321.94572 * 13 3 2 27 27 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 28 28 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 29 29 H 1.07997 * 126.57719 * 359.97438 * 16 15 14 30 30 H 1.07999 * 125.79207 * 180.02562 * 17 16 15 31 31 H 1.08001 * 125.78751 * 180.23473 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4357 2.1891 -1.1612 6 1 0.8266 3.0630 -0.9832 7 6 1.6604 1.7563 -2.4510 8 7 1.1326 2.4075 -3.4644 9 14 2.7144 0.2452 -2.7589 10 1 1.8539 -0.9651 -2.7673 11 1 3.3967 0.3766 -4.0712 12 1 3.7304 0.1227 -1.6828 13 7 1.6552 2.0979 1.2571 14 6 2.6440 1.8364 2.3115 15 6 2.2844 2.6249 3.5443 16 6 1.4556 2.1962 4.6066 17 6 1.4050 3.2063 5.4934 18 8 2.1553 4.2181 5.0275 19 6 2.6953 3.8690 3.8483 20 1 -0.3633 0.4319 0.9326 21 1 -0.3633 -1.0235 -0.0921 22 1 -0.3633 0.5917 -0.8402 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.2909 2.1034 -4.3717 26 1 0.7326 1.8102 1.5472 27 1 2.6490 0.7726 2.5491 28 1 3.6330 2.1358 1.9644 29 1 0.9586 1.2410 4.6900 30 1 0.8551 3.2038 6.4229 31 1 3.3467 4.4841 3.2452 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063047514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = 17.682629 kcal Electronic energy + Delta-G solvation = -13658.448957 eV Core-core repulsion = 11327.807103 eV Total energy + Delta-G solvation = -2330.641854 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.29925 -36.95354 -33.84222 -31.98736 -30.86876 -29.18471 -26.96698 -24.37482 -23.17031 -21.37458 -20.09994 -19.51129 -17.33829 -16.28998 -15.74879 -15.08427 -14.93170 -14.30670 -13.61390 -13.36134 -12.98682 -12.63009 -12.51796 -12.35451 -12.09626 -11.39109 -11.00163 -10.73834 -10.50682 -10.42044 -9.87662 -9.57228 -9.31172 -9.12175 -8.52532 -8.31804 -7.37181 -6.02619 -3.98322 1.98688 2.82726 3.27010 3.34766 3.36166 3.38901 4.42172 4.96907 5.11594 5.26817 5.29133 5.45972 5.72540 5.91784 5.95083 6.01955 6.06154 6.20019 6.30777 6.40202 6.55835 6.71406 6.79881 6.82808 7.00963 7.29112 7.33923 7.74420 7.94535 8.36543 8.72852 9.09372 9.60382 11.10844 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050785 B = 0.007659 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.214436 B = 3655.000741 C = 3802.381436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.159 4.159 3 C 0.185 3.815 4 H 0.033 0.967 5 C -0.490 4.490 6 H 0.082 0.918 7 C 0.069 3.931 8 N -0.901 5.901 9 Si 0.880 3.120 10 H -0.280 1.280 11 H -0.297 1.297 12 H -0.270 1.270 13 N -0.667 5.667 14 C 0.122 3.878 15 C -0.167 4.167 16 C -0.207 4.207 17 C -0.054 4.054 18 O -0.183 6.183 19 C -0.027 4.027 20 H 0.040 0.960 21 H 0.030 0.970 22 H 0.081 0.919 23 H 0.032 0.968 24 H 0.049 0.951 25 H 0.263 0.737 26 H 0.333 0.667 27 H 0.027 0.973 28 H 0.073 0.927 29 H 0.142 0.858 30 H 0.197 0.803 31 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.830 -2.158 14.267 14.545 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.198 4.198 3 C 0.076 3.924 4 H 0.051 0.949 5 C -0.528 4.528 6 H 0.100 0.900 7 C -0.132 4.132 8 N -0.540 5.540 9 Si 0.711 3.289 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.195 1.195 13 N -0.298 5.298 14 C -0.008 4.008 15 C -0.169 4.169 16 C -0.227 4.227 17 C -0.122 4.122 18 O -0.079 6.079 19 C -0.095 4.095 20 H 0.059 0.941 21 H 0.049 0.951 22 H 0.100 0.900 23 H 0.051 0.949 24 H 0.067 0.933 25 H 0.073 0.927 26 H 0.152 0.848 27 H 0.045 0.955 28 H 0.092 0.908 29 H 0.160 0.840 30 H 0.214 0.786 31 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges 2.135 -1.267 14.026 14.245 hybrid contribution 0.260 -2.141 -0.202 2.166 sum 2.396 -3.408 13.824 14.438 Atomic orbital electron populations 1.21649 0.95779 0.99575 1.02506 1.22501 0.97310 1.01090 0.98888 1.19731 0.95964 0.88220 0.88516 0.94933 1.20910 1.31125 1.12713 0.88074 0.90031 1.24895 0.95563 0.96606 0.96158 1.69877 1.45059 1.40282 0.98806 0.86968 0.81165 0.83904 0.76836 1.20668 1.22443 1.19545 1.60659 1.04038 1.62656 1.02461 1.20272 0.97183 0.95090 0.88214 1.20531 1.02027 0.96308 0.97986 1.21757 1.04140 1.01079 0.95682 1.23867 1.00110 0.87021 1.01158 1.84039 1.51192 1.40098 1.32567 1.23906 1.02331 0.96877 0.86416 0.94079 0.95115 0.89999 0.94911 0.93325 0.92737 0.84804 0.95526 0.90848 0.83991 0.78630 0.78084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.78 9.40 37.16 0.35 -2.43 16 2 C -0.16 -3.41 5.22 -26.73 -0.14 -3.55 16 3 C 0.18 4.31 1.93 -68.87 -0.13 4.18 16 4 H 0.03 0.79 6.76 -51.93 -0.35 0.44 16 5 C -0.49 -13.58 7.83 -34.44 -0.27 -13.85 16 6 H 0.08 2.51 8.06 -52.49 -0.42 2.09 16 7 C 0.07 1.96 5.42 -17.82 -0.10 1.87 16 8 N -0.90 -27.42 13.96 55.43 0.77 -26.64 16 9 Si 0.88 21.83 24.32 -169.99 -4.13 17.70 16 10 H -0.28 -6.78 6.91 56.52 0.39 -6.39 16 11 H -0.30 -7.41 7.11 56.52 0.40 -7.01 16 12 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 13 N -0.67 -13.74 6.19 -109.22 -0.68 -14.42 16 14 C 0.12 2.11 6.02 -4.98 -0.03 2.08 16 15 C -0.17 -2.61 5.72 -104.75 -0.60 -3.21 16 16 C -0.21 -2.84 10.87 -39.70 -0.43 -3.27 16 17 C -0.05 -0.66 12.09 29.41 0.36 -0.30 16 18 O -0.18 -2.56 10.65 5.70 0.06 -2.50 16 19 C -0.03 -0.39 12.01 29.41 0.35 -0.04 16 20 H 0.04 0.74 6.63 -51.93 -0.34 0.40 16 21 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 22 H 0.08 1.89 6.85 -51.93 -0.36 1.53 16 23 H 0.03 0.62 7.50 -51.93 -0.39 0.23 16 24 H 0.05 1.11 3.42 -51.93 -0.18 0.93 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.33 6.64 6.69 -39.29 -0.26 6.38 16 27 H 0.03 0.45 7.54 -51.93 -0.39 0.05 16 28 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 29 H 0.14 1.72 8.06 -52.49 -0.42 1.30 16 30 H 0.20 1.56 8.06 -52.49 -0.42 1.13 16 31 H 0.20 2.47 8.06 -52.49 -0.42 2.05 16 LS Contribution 254.20 15.07 3.83 3.83 Total: -1.00 -30.54 254.20 -4.76 -35.30 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -3.98 Total: 5.25 kcal Atomic # 6 Polarization: -17.88 SS G_CDS: -0.64 Total: -18.52 kcal Atomic # 7 Polarization: -41.16 SS G_CDS: 0.10 Total: -41.06 kcal Atomic # 8 Polarization: -2.56 SS G_CDS: 0.06 Total: -2.50 kcal Atomic # 14 Polarization: 21.83 SS G_CDS: -4.13 Total: 17.70 kcal Total LS contribution 3.83 Total: 3.83 kcal Total: -30.54 -4.76 -35.30 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063047514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.987 kcal (2) G-P(sol) polarization free energy of solvation -30.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.764 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.304 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds