Wall clock time and date at job start Sun Mar 29 2020 21:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53004 * 109.47229 * 2 1 4 4 H 1.09005 * 109.47036 * 185.17689 * 3 2 1 5 5 C 1.50696 * 109.47363 * 305.18117 * 3 2 1 6 6 H 1.08001 * 119.99889 * 119.99528 * 5 3 2 7 7 C 1.37882 * 120.00006 * 300.00119 * 5 3 2 8 8 N 1.31511 * 120.00120 * 179.97438 * 7 5 3 9 9 Si 1.86799 * 119.99872 * 359.97438 * 7 5 3 10 10 H 1.48496 * 109.47179 * 90.00115 * 9 7 5 11 11 H 1.48499 * 109.47105 * 210.00365 * 9 7 5 12 12 H 1.48502 * 109.47201 * 329.99832 * 9 7 5 13 13 N 1.46896 * 109.46963 * 65.18299 * 3 2 1 14 14 C 1.46901 * 111.00577 * 85.89931 * 13 3 2 15 15 C 1.50695 * 109.47564 * 174.82063 * 14 13 3 16 16 C 1.41387 * 126.57863 * 90.00354 * 15 14 13 17 17 C 1.34508 * 106.84041 * 179.97438 * 16 15 14 18 18 O 1.34304 * 108.42290 * 359.97438 * 17 16 15 19 19 C 1.34307 * 109.47443 * 359.77399 * 18 17 16 20 20 H 1.09003 * 109.46734 * 294.85059 * 1 2 3 21 21 H 1.09000 * 109.47036 * 174.85705 * 1 2 3 22 22 H 1.08998 * 109.47151 * 54.84694 * 1 2 3 23 23 H 1.08996 * 109.47426 * 120.00419 * 2 1 3 24 24 H 1.09000 * 109.47198 * 240.00421 * 2 1 3 25 25 H 0.96995 * 120.00536 * 179.97438 * 8 7 5 26 26 H 1.00902 * 110.99920 * 321.94572 * 13 3 2 27 27 H 1.08998 * 109.46976 * 294.82816 * 14 13 3 28 28 H 1.09004 * 109.46501 * 54.82186 * 14 13 3 29 29 H 1.07997 * 126.57719 * 359.97438 * 16 15 14 30 30 H 1.07999 * 125.79207 * 180.02562 * 17 16 15 31 31 H 1.08001 * 125.78751 * 180.23473 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1261 1.4439 -0.0927 5 6 1.4357 2.1891 -1.1612 6 1 0.8266 3.0630 -0.9832 7 6 1.6604 1.7563 -2.4510 8 7 1.1326 2.4075 -3.4644 9 14 2.7144 0.2452 -2.7589 10 1 1.8539 -0.9651 -2.7673 11 1 3.3967 0.3766 -4.0712 12 1 3.7304 0.1227 -1.6828 13 7 1.6552 2.0979 1.2571 14 6 2.6440 1.8364 2.3115 15 6 2.2844 2.6249 3.5443 16 6 1.4556 2.1962 4.6066 17 6 1.4050 3.2063 5.4934 18 8 2.1553 4.2181 5.0275 19 6 2.6953 3.8690 3.8483 20 1 -0.3633 0.4319 0.9326 21 1 -0.3633 -1.0235 -0.0921 22 1 -0.3633 0.5917 -0.8402 23 1 1.8934 -0.5139 0.8899 24 1 1.8933 -0.5138 -0.8900 25 1 1.2909 2.1034 -4.3717 26 1 0.7326 1.8102 1.5472 27 1 2.6490 0.7726 2.5491 28 1 3.6330 2.1358 1.9644 29 1 0.9586 1.2410 4.6900 30 1 0.8551 3.2038 6.4229 31 1 3.3467 4.4841 3.2452 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063047514.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:44:15 Heat of formation + Delta-G solvation = -4.200705 kcal Electronic energy + Delta-G solvation = -13659.397890 eV Core-core repulsion = 11327.807103 eV Total energy + Delta-G solvation = -2331.590787 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -43.34945 -38.64563 -35.29445 -33.91526 -32.30907 -30.35915 -28.79893 -25.90845 -24.98443 -22.38980 -21.41125 -21.17523 -18.71031 -18.06909 -17.05172 -16.76779 -16.44409 -15.49567 -15.30672 -15.00208 -14.64211 -14.20534 -14.09118 -13.60377 -13.51966 -12.83821 -12.72422 -12.48673 -12.32363 -12.12503 -11.67833 -11.26961 -11.13720 -10.70495 -10.56888 -9.38635 -8.98909 -8.23221 -6.23021 0.95531 1.30661 1.35452 1.44750 1.72966 2.34412 2.37329 3.11414 3.69369 3.96993 4.08700 4.26178 4.28906 4.33788 4.48183 4.61244 4.72964 4.87821 4.90836 5.05503 5.15467 5.22775 5.28498 5.36786 5.58105 5.64215 5.73323 6.06178 6.28811 6.72551 6.75652 6.82582 7.40259 8.94264 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.050785 B = 0.007659 C = 0.007362 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 551.214436 B = 3655.000741 C = 3802.381436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.157 4.157 3 C 0.190 3.810 4 H 0.027 0.973 5 C -0.487 4.487 6 H 0.034 0.966 7 C 0.014 3.986 8 N -0.952 5.952 9 Si 0.942 3.058 10 H -0.267 1.267 11 H -0.301 1.301 12 H -0.251 1.251 13 N -0.679 5.679 14 C 0.127 3.873 15 C -0.190 4.190 16 C -0.226 4.226 17 C -0.041 4.041 18 O -0.190 6.190 19 C -0.036 4.036 20 H 0.058 0.942 21 H 0.056 0.944 22 H 0.043 0.957 23 H 0.064 0.936 24 H 0.038 0.962 25 H 0.263 0.737 26 H 0.336 0.664 27 H 0.038 0.962 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.239 0.761 31 H 0.214 0.786 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.326 -3.768 16.400 16.987 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.196 4.196 3 C 0.080 3.920 4 H 0.045 0.955 5 C -0.526 4.526 6 H 0.052 0.948 7 C -0.183 4.183 8 N -0.593 5.593 9 Si 0.770 3.230 10 H -0.193 1.193 11 H -0.228 1.228 12 H -0.175 1.175 13 N -0.311 5.311 14 C -0.002 4.002 15 C -0.192 4.192 16 C -0.245 4.245 17 C -0.108 4.108 18 O -0.086 6.086 19 C -0.104 4.104 20 H 0.077 0.923 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.083 0.917 24 H 0.057 0.943 25 H 0.072 0.928 26 H 0.155 0.845 27 H 0.056 0.944 28 H 0.088 0.912 29 H 0.174 0.826 30 H 0.255 0.745 31 H 0.230 0.770 Dipole moment (debyes) X Y Z Total from point charges 2.635 -2.880 16.197 16.660 hybrid contribution 0.044 -1.533 -0.768 1.715 sum 2.679 -4.414 15.429 16.270 Atomic orbital electron populations 1.21572 0.95080 1.00610 1.01802 1.22422 0.97966 0.99350 0.99835 1.19494 0.95048 0.89239 0.88210 0.95520 1.21111 1.29965 1.11450 0.90078 0.94752 1.25677 0.96990 0.99799 0.95823 1.70036 1.47315 1.42583 0.99355 0.85952 0.79876 0.80289 0.76870 1.19320 1.22848 1.17493 1.60504 1.05045 1.62896 1.02639 1.20220 0.96004 0.96113 0.87853 1.20543 1.03609 0.96922 0.98116 1.21994 1.04562 1.02374 0.95571 1.24679 0.98587 0.85679 1.01824 1.84060 1.51419 1.40802 1.32311 1.24188 1.02528 0.96878 0.86823 0.92340 0.92549 0.93803 0.91747 0.94341 0.92754 0.84473 0.94361 0.91154 0.82550 0.74502 0.76952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.12 9.40 71.98 0.68 -4.45 16 2 C -0.16 -6.32 5.22 30.59 0.16 -6.16 16 3 C 0.19 8.69 1.93 44.17 0.09 8.77 16 4 H 0.03 1.26 6.76 -2.38 -0.02 1.25 16 5 C -0.49 -27.66 7.83 25.60 0.20 -27.46 16 6 H 0.03 2.22 8.06 -2.91 -0.02 2.19 16 7 C 0.01 0.79 5.42 84.66 0.46 1.25 16 8 N -0.95 -59.75 13.96 21.45 0.30 -59.45 16 9 Si 0.94 44.79 24.32 68.60 1.67 46.46 16 10 H -0.27 -12.09 6.91 99.48 0.69 -11.40 16 11 H -0.30 -14.37 7.11 99.48 0.71 -13.66 16 12 H -0.25 -11.04 6.53 99.48 0.65 -10.39 16 13 N -0.68 -27.39 6.19 -499.47 -3.09 -30.49 16 14 C 0.13 4.18 6.02 85.56 0.52 4.70 16 15 C -0.19 -5.62 5.72 -19.94 -0.11 -5.74 16 16 C -0.23 -5.60 10.87 22.19 0.24 -5.36 16 17 C -0.04 -0.87 12.09 66.97 0.81 -0.06 16 18 O -0.19 -4.89 10.65 -2.53 -0.03 -4.92 16 19 C -0.04 -0.99 12.01 66.97 0.80 -0.19 16 20 H 0.06 2.00 6.63 -2.39 -0.02 1.99 16 21 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 22 H 0.04 2.01 6.85 -2.39 -0.02 1.99 16 23 H 0.06 2.21 7.50 -2.39 -0.02 2.19 16 24 H 0.04 1.63 3.42 -2.39 -0.01 1.62 16 25 H 0.26 15.56 8.31 -92.71 -0.77 14.79 16 26 H 0.34 13.02 6.69 -89.69 -0.60 12.42 16 27 H 0.04 1.17 7.54 -2.39 -0.02 1.15 16 28 H 0.07 2.32 7.93 -2.38 -0.02 2.30 16 29 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 30 H 0.24 2.70 8.06 -2.91 -0.02 2.68 16 31 H 0.21 5.05 8.06 -2.91 -0.02 5.02 16 Total: -1.00 -66.93 254.20 3.13 -63.80 By element: Atomic # 1 Polarization: 18.84 SS G_CDS: 0.45 Total: 19.29 kcal Atomic # 6 Polarization: -38.53 SS G_CDS: 3.84 Total: -34.69 kcal Atomic # 7 Polarization: -87.15 SS G_CDS: -2.79 Total: -89.94 kcal Atomic # 8 Polarization: -4.89 SS G_CDS: -0.03 Total: -4.92 kcal Atomic # 14 Polarization: 44.79 SS G_CDS: 1.67 Total: 46.46 kcal Total: -66.93 3.13 -63.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063047514.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.596 kcal (2) G-P(sol) polarization free energy of solvation -66.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.134 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.797 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.201 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds