Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 5 5 C 1.46892 * 111.00363 * 85.00189 * 4 2 1 6 6 C 1.50698 * 109.47411 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99879 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99806 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00282 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99630 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47029 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47126 * 119.99717 * 10 8 6 13 13 H 1.48494 * 109.47170 * 239.99719 * 10 8 6 14 14 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 15 15 N 1.30499 * 125.65419 * 74.68613 * 14 2 1 16 16 C 1.34123 * 109.25700 * 179.89459 * 15 14 2 17 17 C 1.34668 * 108.02524 * 0.37382 * 16 15 14 18 18 N 1.35046 * 125.64747 * 255.00057 * 14 2 1 19 19 C 1.46497 * 126.39765 * 359.93968 * 18 14 2 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.00903 * 111.00184 * 321.04231 * 4 2 1 24 24 H 1.08999 * 109.46953 * 300.00101 * 5 4 2 25 25 H 1.09001 * 109.47256 * 59.99520 * 5 4 2 26 26 H 0.97000 * 119.99958 * 180.02562 * 9 8 6 27 27 H 1.08002 * 125.98954 * 180.12176 * 16 15 14 28 28 H 1.07994 * 126.59792 * 179.82036 * 17 16 15 29 29 H 1.08998 * 109.47494 * 90.00165 * 19 18 14 30 30 H 1.09001 * 109.47369 * 210.00228 * 19 18 14 31 31 H 1.09005 * 109.47344 * 329.99968 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 1 2.8386 -1.5693 -3.4792 8 6 2.7327 0.1356 -4.7593 9 7 2.4284 1.4117 -4.8524 10 14 3.3605 -0.7866 -6.2575 11 1 3.6299 -2.2004 -5.8916 12 1 2.3371 -0.7394 -7.3326 13 1 4.6141 -0.1531 -6.7394 14 6 2.0324 -0.7105 1.2304 15 7 2.0220 -2.0014 1.4209 16 6 2.5473 -2.2753 2.6242 17 6 2.8890 -1.1093 3.2048 18 7 2.5626 -0.1162 2.3210 19 6 2.7532 1.3225 2.5208 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.4495 -1.4979 -1.4101 24 1 1.0871 0.6163 -2.5525 25 1 2.7588 1.0461 -2.1183 26 1 2.5296 1.8739 -5.6991 27 1 2.6705 -3.2584 3.0540 28 1 3.3354 -0.9821 4.1799 29 1 1.8645 1.7452 2.9895 30 1 3.6172 1.4887 3.1643 31 1 2.9198 1.8043 1.5573 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070007479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = 59.110798 kcal Electronic energy + Delta-G solvation = -13534.421197 eV Core-core repulsion = 11237.868554 eV Total energy + Delta-G solvation = -2296.552643 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.74106 -36.15583 -33.74859 -32.78475 -30.20264 -28.22710 -26.79225 -25.96822 -23.05779 -21.65924 -20.74922 -19.09825 -17.09995 -16.15607 -15.50960 -14.90399 -14.31895 -14.07283 -13.75153 -13.26214 -13.15198 -12.80995 -12.60055 -12.20315 -11.92858 -11.62525 -11.28926 -10.79251 -10.72516 -10.59245 -9.92258 -9.54611 -9.29318 -9.19018 -8.48389 -8.04919 -7.26692 -6.02524 -4.03472 2.33630 3.01901 3.33284 3.40437 3.47063 3.54712 4.45597 4.77576 4.85949 4.98672 5.11130 5.32234 5.33766 5.39563 5.54312 5.62565 5.72032 5.91263 6.10997 6.22430 6.44444 6.63430 7.07734 7.19654 7.41225 7.46109 7.81606 8.12119 8.42079 8.52901 8.63932 9.06720 9.61521 11.08693 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047820 B = 0.006863 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.390839 B = 4079.067338 C = 4244.994853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.166 3.834 3 H 0.082 0.918 4 N -0.673 5.673 5 C 0.195 3.805 6 C -0.511 4.511 7 H 0.064 0.936 8 C 0.055 3.945 9 N -0.900 5.900 10 Si 0.899 3.101 11 H -0.271 1.271 12 H -0.285 1.285 13 H -0.284 1.284 14 C 0.240 3.760 15 N -0.479 5.479 16 C -0.031 4.031 17 C -0.077 4.077 18 N -0.463 5.463 19 C 0.071 3.929 20 H 0.048 0.952 21 H 0.068 0.932 22 H 0.063 0.937 23 H 0.342 0.658 24 H -0.010 1.010 25 H 0.026 0.974 26 H 0.260 0.740 27 H 0.164 0.836 28 H 0.168 0.832 29 H 0.073 0.927 30 H 0.082 0.918 31 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 0.307 14.731 14.789 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C 0.053 3.947 3 H 0.100 0.900 4 N -0.304 5.304 5 C 0.069 3.931 6 C -0.550 4.550 7 H 0.083 0.917 8 C -0.146 4.146 9 N -0.540 5.540 10 Si 0.727 3.273 11 H -0.196 1.196 12 H -0.211 1.211 13 H -0.211 1.211 14 C -0.024 4.024 15 N -0.197 5.197 16 C -0.179 4.179 17 C -0.209 4.209 18 N -0.146 5.146 19 C -0.072 4.072 20 H 0.067 0.933 21 H 0.087 0.913 22 H 0.083 0.917 23 H 0.160 0.840 24 H 0.008 0.992 25 H 0.044 0.956 26 H 0.070 0.930 27 H 0.181 0.819 28 H 0.185 0.815 29 H 0.092 0.908 30 H 0.101 0.899 31 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -0.862 0.105 14.227 14.254 hybrid contribution -0.125 0.381 -0.295 0.498 sum -0.987 0.486 13.932 13.975 Atomic orbital electron populations 1.22434 0.96123 1.02746 1.01764 1.19723 0.92344 0.95712 0.86954 0.90031 1.60474 1.55960 1.10426 1.03586 1.19619 0.95351 0.91688 0.86485 1.21232 1.43157 0.97129 0.93434 0.91734 1.24977 0.95654 0.94935 0.99012 1.69966 1.49153 1.09025 1.25829 0.86419 0.78373 0.80111 0.82410 1.19566 1.21076 1.21056 1.23536 0.99843 0.88845 0.90150 1.70229 1.20611 1.12281 1.16581 1.22272 1.04782 0.97756 0.93139 1.22528 1.11610 0.88574 0.98220 1.45310 1.47040 1.07359 1.14924 1.22015 1.02698 0.78312 1.04155 0.93288 0.91333 0.91749 0.83993 0.99220 0.95627 0.93006 0.81880 0.81503 0.90835 0.89921 0.89210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.79 9.14 37.16 0.34 -2.45 16 2 C 0.17 3.07 2.95 -68.86 -0.20 2.87 16 3 H 0.08 1.46 6.40 -51.93 -0.33 1.12 16 4 N -0.67 -15.20 6.21 -109.22 -0.68 -15.87 16 5 C 0.19 5.10 5.24 -4.98 -0.03 5.07 16 6 C -0.51 -14.69 9.32 -34.44 -0.32 -15.01 16 7 H 0.06 1.86 7.81 -52.49 -0.41 1.45 16 8 C 0.06 1.59 5.46 -17.82 -0.10 1.49 16 9 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 10 Si 0.90 21.97 29.54 -169.99 -5.02 16.95 16 11 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 14 C 0.24 4.32 6.75 -155.42 -1.05 3.28 16 15 N -0.48 -9.19 11.24 -10.82 -0.12 -9.31 16 16 C -0.03 -0.48 11.87 -17.82 -0.21 -0.70 16 17 C -0.08 -1.04 11.58 -16.56 -0.19 -1.24 16 18 N -0.46 -6.79 3.15 -121.28 -0.38 -7.18 16 19 C 0.07 0.73 10.93 59.85 0.65 1.38 16 20 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 21 H 0.07 1.16 7.45 -51.93 -0.39 0.77 16 22 H 0.06 1.07 8.13 -51.93 -0.42 0.65 16 23 H 0.34 7.71 8.46 -39.29 -0.33 7.38 16 24 H -0.01 -0.27 7.44 -51.93 -0.39 -0.65 16 25 H 0.03 0.71 8.06 -51.93 -0.42 0.29 16 26 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 27 H 0.16 2.07 8.06 -52.49 -0.42 1.65 16 28 H 0.17 1.60 8.06 -52.49 -0.42 1.17 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.09 0.96 6.92 -51.93 -0.36 0.60 16 LS Contribution 267.50 15.07 4.03 4.03 Total: -1.00 -32.90 267.50 -6.84 -39.74 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -4.30 Total: 3.01 kcal Atomic # 6 Polarization: -4.20 SS G_CDS: -1.11 Total: -5.30 kcal Atomic # 7 Polarization: -57.99 SS G_CDS: -0.45 Total: -58.43 kcal Atomic # 14 Polarization: 21.97 SS G_CDS: -5.02 Total: 16.95 kcal Total LS contribution 4.03 Total: 4.03 kcal Total: -32.90 -6.84 -39.74 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070007479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.852 kcal (2) G-P(sol) polarization free energy of solvation -32.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.948 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.838 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 59.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds