Wall clock time and date at job start Sun Mar 29 2020 21:59:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46902 * 109.46626 * 240.00176 * 2 1 3 5 5 C 1.46892 * 111.00363 * 85.00189 * 4 2 1 6 6 C 1.50698 * 109.47411 * 179.97438 * 5 4 2 7 7 H 1.07991 * 119.99879 * 359.97438 * 6 5 4 8 8 C 1.37882 * 119.99806 * 180.02562 * 6 5 4 9 9 N 1.31511 * 120.00282 * 359.97438 * 8 6 5 10 10 Si 1.86803 * 119.99630 * 179.97438 * 8 6 5 11 11 H 1.48505 * 109.47029 * 359.97438 * 10 8 6 12 12 H 1.48499 * 109.47126 * 119.99717 * 10 8 6 13 13 H 1.48494 * 109.47170 * 239.99719 * 10 8 6 14 14 C 1.50697 * 109.47239 * 120.00336 * 2 1 3 15 15 N 1.30499 * 125.65419 * 74.68613 * 14 2 1 16 16 C 1.34123 * 109.25700 * 179.89459 * 15 14 2 17 17 C 1.34668 * 108.02524 * 0.37382 * 16 15 14 18 18 N 1.35046 * 125.64747 * 255.00057 * 14 2 1 19 19 C 1.46497 * 126.39765 * 359.93968 * 18 14 2 20 20 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 21 21 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 22 22 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 23 23 H 1.00903 * 111.00184 * 321.04231 * 4 2 1 24 24 H 1.08999 * 109.46953 * 300.00101 * 5 4 2 25 25 H 1.09001 * 109.47256 * 59.99520 * 5 4 2 26 26 H 0.97000 * 119.99958 * 180.02562 * 9 8 6 27 27 H 1.08002 * 125.98954 * 180.12176 * 16 15 14 28 28 H 1.07994 * 126.59792 * 179.82036 * 17 16 15 29 29 H 1.08998 * 109.47494 * 90.00165 * 19 18 14 30 30 H 1.09001 * 109.47369 * 210.00228 * 19 18 14 31 31 H 1.09005 * 109.47344 * 329.99968 * 19 18 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0196 -0.6925 -1.1995 5 6 2.0824 0.2225 -2.3469 6 6 2.5884 -0.5216 -3.5558 7 1 2.8386 -1.5693 -3.4792 8 6 2.7327 0.1356 -4.7593 9 7 2.4284 1.4117 -4.8524 10 14 3.3605 -0.7866 -6.2575 11 1 3.6299 -2.2004 -5.8916 12 1 2.3371 -0.7394 -7.3326 13 1 4.6141 -0.1531 -6.7394 14 6 2.0324 -0.7105 1.2304 15 7 2.0220 -2.0014 1.4209 16 6 2.5473 -2.2753 2.6242 17 6 2.8890 -1.1093 3.2048 18 7 2.5626 -0.1162 2.3210 19 6 2.7532 1.3225 2.5208 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 0.5138 -0.8899 22 1 -0.3633 -1.0277 -0.0005 23 1 1.4495 -1.4979 -1.4101 24 1 1.0871 0.6163 -2.5525 25 1 2.7588 1.0461 -2.1183 26 1 2.5296 1.8739 -5.6991 27 1 2.6705 -3.2584 3.0540 28 1 3.3354 -0.9821 4.1799 29 1 1.8645 1.7452 2.9895 30 1 3.6172 1.4887 3.1643 31 1 2.9198 1.8043 1.5573 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070007479.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:17 Heat of formation + Delta-G solvation = 35.911945 kcal Electronic energy + Delta-G solvation = -13535.427175 eV Core-core repulsion = 11237.868554 eV Total energy + Delta-G solvation = -2297.558621 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.91620 -37.83902 -34.89917 -34.81667 -31.92622 -29.49584 -27.95273 -27.75498 -24.65379 -23.43936 -21.97895 -20.44324 -18.70671 -17.84179 -16.73646 -16.62667 -15.82837 -15.65990 -15.30861 -14.64523 -14.31178 -14.14077 -13.83248 -13.55253 -13.43832 -13.30272 -13.04050 -12.67780 -12.49334 -12.21178 -11.96167 -11.33253 -10.77900 -10.66952 -10.44663 -9.26028 -9.06697 -8.22616 -6.32596 1.18851 1.41164 1.41667 1.56083 1.97413 2.29814 2.41503 3.10667 3.51680 3.65423 3.92952 3.99836 4.23141 4.24579 4.42704 4.58877 4.67531 4.70630 4.79193 4.88438 5.06236 5.15548 5.29533 5.47537 5.62129 5.97418 6.01204 6.29190 6.47543 6.69454 6.87832 7.33079 7.37898 8.88749 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.047820 B = 0.006863 C = 0.006594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 585.390839 B = 4079.067338 C = 4244.994853 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C 0.167 3.833 3 H 0.083 0.917 4 N -0.680 5.680 5 C 0.213 3.787 6 C -0.537 4.537 7 H 0.057 0.943 8 C 0.006 3.994 9 N -0.931 5.931 10 Si 0.970 3.030 11 H -0.268 1.268 12 H -0.275 1.275 13 H -0.277 1.277 14 C 0.208 3.792 15 N -0.518 5.518 16 C -0.064 4.064 17 C -0.052 4.052 18 N -0.461 5.461 19 C 0.062 3.938 20 H 0.075 0.925 21 H 0.057 0.943 22 H 0.057 0.943 23 H 0.339 0.661 24 H -0.027 1.027 25 H 0.003 0.997 26 H 0.266 0.734 27 H 0.184 0.816 28 H 0.214 0.786 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.687 0.317 15.967 15.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.054 3.946 3 H 0.101 0.899 4 N -0.310 5.310 5 C 0.086 3.914 6 C -0.575 4.575 7 H 0.076 0.924 8 C -0.193 4.193 9 N -0.571 5.571 10 Si 0.795 3.205 11 H -0.192 1.192 12 H -0.200 1.200 13 H -0.202 1.202 14 C -0.056 4.056 15 N -0.238 5.238 16 C -0.212 4.212 17 C -0.185 4.185 18 N -0.144 5.144 19 C -0.079 4.079 20 H 0.094 0.906 21 H 0.076 0.924 22 H 0.076 0.924 23 H 0.157 0.843 24 H -0.009 1.009 25 H 0.021 0.979 26 H 0.075 0.925 27 H 0.201 0.799 28 H 0.230 0.770 29 H 0.115 0.885 30 H 0.131 0.869 31 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -0.286 0.136 15.484 15.488 hybrid contribution -0.286 0.400 -0.548 0.736 sum -0.572 0.536 14.936 14.957 Atomic orbital electron populations 1.22289 0.94624 1.02514 1.02454 1.19711 0.93627 0.95482 0.85758 0.89858 1.60345 1.56946 1.10016 1.03726 1.19232 0.93527 0.91291 0.87334 1.21549 1.43920 0.97109 0.94919 0.92428 1.25865 0.95529 0.95811 1.02084 1.70067 1.49656 1.10434 1.26931 0.85324 0.78048 0.78741 0.78429 1.19215 1.20003 1.20231 1.23132 1.02360 0.89005 0.91091 1.70115 1.21701 1.13302 1.18634 1.22780 1.05934 0.99801 0.92668 1.23231 1.08882 0.87380 0.98993 1.45553 1.45628 1.09195 1.13992 1.22344 1.05195 0.75822 1.04521 0.90628 0.92434 0.92399 0.84338 1.00921 0.97893 0.92528 0.79914 0.76970 0.88517 0.86938 0.90237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.22 9.14 71.98 0.66 -4.56 16 2 C 0.17 6.25 2.95 44.17 0.13 6.38 16 3 H 0.08 3.02 6.40 -2.39 -0.02 3.01 16 4 N -0.68 -31.60 6.21 -499.48 -3.10 -34.71 16 5 C 0.21 11.56 5.24 85.56 0.45 12.01 16 6 C -0.54 -31.52 9.32 25.60 0.24 -31.28 16 7 H 0.06 3.38 7.81 -2.92 -0.02 3.36 16 8 C 0.01 0.32 5.46 84.66 0.46 0.78 16 9 N -0.93 -56.00 13.29 21.45 0.28 -55.71 16 10 Si 0.97 45.16 29.54 68.60 2.03 47.19 16 11 H -0.27 -12.22 7.11 99.48 0.71 -11.52 16 12 H -0.27 -12.28 7.11 99.48 0.71 -11.58 16 13 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 14 C 0.21 7.37 6.75 138.13 0.93 8.30 16 15 N -0.52 -19.74 11.24 -188.14 -2.11 -21.86 16 16 C -0.06 -1.91 11.87 83.52 0.99 -0.92 16 17 C -0.05 -1.24 11.58 83.08 0.96 -0.27 16 18 N -0.46 -12.50 3.15 -537.62 -1.69 -14.19 16 19 C 0.06 1.10 10.93 127.77 1.40 2.50 16 20 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 21 H 0.06 1.98 7.45 -2.39 -0.02 1.96 16 22 H 0.06 1.95 8.13 -2.39 -0.02 1.93 16 23 H 0.34 15.87 8.46 -89.69 -0.76 15.11 16 24 H -0.03 -1.51 7.44 -2.39 -0.02 -1.53 16 25 H 0.00 0.17 8.06 -2.39 -0.02 0.15 16 26 H 0.27 14.92 8.31 -92.71 -0.77 14.15 16 27 H 0.18 4.36 8.06 -2.91 -0.02 4.34 16 28 H 0.21 2.96 8.06 -2.91 -0.02 2.93 16 29 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.11 1.33 8.14 -2.39 -0.02 1.31 16 31 H 0.08 1.59 6.92 -2.38 -0.02 1.57 16 Total: -1.00 -71.60 267.50 1.98 -69.63 By element: Atomic # 1 Polarization: 16.36 SS G_CDS: 0.36 Total: 16.71 kcal Atomic # 6 Polarization: -13.28 SS G_CDS: 6.22 Total: -7.06 kcal Atomic # 7 Polarization: -119.84 SS G_CDS: -6.63 Total: -126.47 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 2.03 Total: 47.19 kcal Total: -71.60 1.98 -69.63 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070007479.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.537 kcal (2) G-P(sol) polarization free energy of solvation -71.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.934 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.978 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.625 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds