Wall clock time and date at job start Sun Mar 29 2020 22:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99904 * 2 1 4 4 H 1.48504 * 109.47002 * 90.00080 * 3 2 1 5 5 H 1.48498 * 109.47482 * 210.00588 * 3 2 1 6 6 H 1.48499 * 109.47244 * 330.00340 * 3 2 1 7 7 C 1.37878 * 120.00017 * 180.27873 * 2 1 3 8 8 H 1.08007 * 119.99473 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00338 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00319 * 170.00045 * 10 9 7 12 12 C 1.52999 * 109.47541 * 195.88975 * 11 10 9 13 13 C 1.53001 * 117.49963 * 244.28471 * 12 11 10 14 14 C 1.53002 * 117.50157 * 175.62402 * 12 11 10 15 15 C 1.46899 * 110.99971 * 293.95193 * 10 9 7 16 16 C 1.52998 * 109.47531 * 294.80713 * 15 10 9 17 17 C 1.52992 * 117.50132 * 244.92625 * 16 15 10 18 18 C 1.52997 * 117.50352 * 176.26555 * 16 15 10 19 19 H 0.97000 * 120.00561 * 359.71698 * 1 2 3 20 20 H 1.08997 * 109.47157 * 299.99991 * 9 7 2 21 21 H 1.09003 * 109.47355 * 59.99923 * 9 7 2 22 22 H 1.09004 * 109.47290 * 315.89088 * 11 10 9 23 23 H 1.09004 * 109.47433 * 75.88760 * 11 10 9 24 24 H 1.09004 * 115.54692 * 29.95125 * 12 11 10 25 25 H 1.09007 * 117.49973 * 359.97438 * 13 12 11 26 26 H 1.09002 * 117.50027 * 145.01779 * 13 12 11 27 27 H 1.08993 * 117.49872 * 214.97870 * 14 12 11 28 28 H 1.09004 * 117.49665 * 359.97438 * 14 12 11 29 29 H 1.09002 * 109.47280 * 54.80764 * 15 10 9 30 30 H 1.09005 * 109.47289 * 174.80364 * 15 10 9 31 31 H 1.09002 * 115.54927 * 30.59855 * 16 15 10 32 32 H 1.08999 * 117.50359 * 0.02562 * 17 16 15 33 33 H 1.09003 * 117.50177 * 145.01984 * 17 16 15 34 34 H 1.09002 * 117.50253 * 214.98712 * 18 16 15 35 35 H 1.09008 * 117.49725 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0846 -1.1939 -0.0062 9 6 1.2511 -2.4991 -0.0116 10 7 2.2057 -3.6156 -0.0165 11 6 1.5214 -4.8945 0.2160 12 6 2.5497 -5.9615 0.5965 13 6 2.7313 -7.1410 -0.3609 14 6 2.0226 -7.3457 0.9803 15 6 2.9710 -3.6484 -1.2700 16 6 2.0270 -3.9475 -2.4363 17 6 2.2297 -5.2636 -3.1896 18 6 2.6207 -3.9375 -3.8463 19 1 -0.4851 0.8400 0.0041 20 1 0.6248 -2.5610 0.8783 21 1 0.6241 -2.5528 -0.9016 22 1 0.8008 -4.7791 1.0258 23 1 1.0013 -5.1987 -0.6924 24 1 3.4340 -5.5969 1.1193 25 1 2.1178 -7.1570 -1.2618 26 1 3.7349 -7.5527 -0.4678 27 1 2.5603 -7.8918 1.7553 28 1 0.9431 -7.4960 0.9621 29 1 3.4498 -2.6821 -1.4288 30 1 3.7327 -4.4259 -1.2105 31 1 1.0049 -3.5875 -2.3181 32 1 3.0352 -5.9167 -2.8541 33 1 1.3410 -5.7694 -3.5673 34 1 1.9893 -3.5711 -4.6558 35 1 3.6840 -3.7173 -3.9431 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070064215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:24 Heat of formation + Delta-G solvation = 47.680573 kcal Electronic energy + Delta-G solvation = -14125.670257 eV Core-core repulsion = 11932.162306 eV Total energy + Delta-G solvation = -2193.507951 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.49716 -36.52208 -34.70693 -32.34158 -27.64467 -26.87463 -23.97483 -22.48163 -21.77318 -21.50727 -20.29958 -18.88826 -16.31640 -15.70593 -15.02583 -14.78303 -14.28528 -13.97051 -13.63572 -13.14411 -12.21539 -11.81595 -11.59395 -11.38754 -11.29567 -11.08376 -11.01127 -10.95771 -10.66832 -10.44256 -10.17601 -9.93512 -9.67791 -9.50270 -9.33245 -9.06208 -8.39470 -7.14068 -5.98994 -3.99353 3.34401 3.40223 3.43890 4.10461 4.25632 4.45740 4.85462 5.17540 5.20095 5.24661 5.35155 5.38893 5.41753 5.63709 5.81877 5.88137 5.92119 6.00294 6.11122 6.20806 6.24859 6.28656 6.32977 6.44625 6.50612 6.57075 6.73000 6.93213 7.36544 7.43373 7.85319 8.15136 8.27934 8.61692 9.07993 9.64316 11.11917 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032808 B = 0.008885 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.251964 B = 3150.545247 C = 3641.802833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.055 3.945 3 Si 0.896 3.104 4 H -0.281 1.281 5 H -0.274 1.274 6 H -0.288 1.288 7 C -0.502 4.502 8 H 0.062 0.938 9 C 0.189 3.811 10 N -0.530 5.530 11 C 0.082 3.918 12 C -0.130 4.130 13 C -0.187 4.187 14 C -0.187 4.187 15 C 0.097 3.903 16 C -0.168 4.168 17 C -0.188 4.188 18 C -0.181 4.181 19 H 0.260 0.740 20 H 0.027 0.973 21 H -0.003 1.003 22 H 0.066 0.934 23 H 0.033 0.967 24 H 0.107 0.893 25 H 0.092 0.908 26 H 0.085 0.915 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.083 0.917 30 H 0.056 0.944 31 H 0.106 0.894 32 H 0.091 0.909 33 H 0.082 0.918 34 H 0.085 0.915 35 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.087 -11.123 -3.170 12.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.146 4.146 3 Si 0.724 3.276 4 H -0.207 1.207 5 H -0.199 1.199 6 H -0.214 1.214 7 C -0.541 4.541 8 H 0.080 0.920 9 C 0.065 3.935 10 N -0.252 5.252 11 C -0.047 4.047 12 C -0.149 4.149 13 C -0.224 4.224 14 C -0.225 4.225 15 C -0.032 4.032 16 C -0.187 4.187 17 C -0.225 4.225 18 C -0.219 4.219 19 H 0.070 0.930 20 H 0.045 0.955 21 H 0.014 0.986 22 H 0.085 0.915 23 H 0.051 0.949 24 H 0.125 0.875 25 H 0.111 0.889 26 H 0.104 0.896 27 H 0.106 0.894 28 H 0.107 0.893 29 H 0.101 0.899 30 H 0.074 0.926 31 H 0.123 0.877 32 H 0.109 0.891 33 H 0.100 0.900 34 H 0.104 0.896 35 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 4.258 -10.906 -2.763 12.030 hybrid contribution -0.280 0.784 -0.726 1.105 sum 3.978 -10.122 -3.489 11.421 Atomic orbital electron populations 1.69955 1.06027 1.26648 1.51338 1.24971 0.94837 0.99221 0.95595 0.86528 0.79732 0.83265 0.78065 1.20704 1.19882 1.21398 1.21151 0.93440 0.89949 1.49574 0.91957 1.19768 0.90319 0.87389 0.96073 1.62288 1.28297 1.02477 1.32182 1.21623 0.94069 0.89741 0.99256 1.22368 1.01666 0.88651 1.02229 1.23052 1.01259 1.04092 0.93979 1.22915 1.00206 1.00810 0.98522 1.21668 0.94510 1.01341 0.85654 1.23141 1.02447 0.99387 0.93772 1.23016 1.02670 0.91036 1.05777 1.22822 1.01126 1.01196 0.96706 0.93026 0.95454 0.98578 0.91544 0.94911 0.87477 0.88950 0.89624 0.89370 0.89270 0.89896 0.92584 0.87653 0.89108 0.89989 0.89612 0.89219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.81 13.29 55.43 0.74 -26.08 16 2 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 3 Si 0.90 21.79 29.54 -169.99 -5.02 16.77 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.27 -6.53 7.11 56.52 0.40 -6.13 16 6 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 7 C -0.50 -14.09 8.44 -34.44 -0.29 -14.38 16 8 H 0.06 1.74 7.13 -52.48 -0.37 1.36 16 9 C 0.19 4.91 4.57 -4.98 -0.02 4.89 16 10 N -0.53 -11.38 4.66 -236.08 -1.10 -12.48 16 11 C 0.08 1.49 5.10 -3.83 -0.02 1.47 16 12 C -0.13 -2.00 5.13 -90.62 -0.46 -2.46 16 13 C -0.19 -2.42 9.86 -26.69 -0.26 -2.68 16 14 C -0.19 -2.39 10.25 -26.69 -0.27 -2.66 16 15 C 0.10 1.88 5.31 -3.83 -0.02 1.86 16 16 C -0.17 -3.01 3.97 -90.63 -0.36 -3.37 16 17 C -0.19 -2.73 9.35 -26.70 -0.25 -2.98 16 18 C -0.18 -2.78 10.25 -26.70 -0.27 -3.05 16 19 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 20 H 0.03 0.77 7.86 -51.93 -0.41 0.36 16 21 H 0.00 -0.09 6.11 -51.93 -0.32 -0.41 16 22 H 0.07 1.26 7.81 -51.93 -0.41 0.85 16 23 H 0.03 0.59 6.26 -51.93 -0.32 0.27 16 24 H 0.11 1.72 8.14 -51.93 -0.42 1.30 16 25 H 0.09 1.20 6.88 -51.93 -0.36 0.84 16 26 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 27 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 28 H 0.09 1.10 8.14 -51.93 -0.42 0.68 16 29 H 0.08 1.78 6.73 -51.93 -0.35 1.43 16 30 H 0.06 0.99 7.27 -51.93 -0.38 0.61 16 31 H 0.11 2.18 6.27 -51.93 -0.33 1.85 16 32 H 0.09 1.23 7.27 -51.93 -0.38 0.86 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.09 1.26 8.14 -51.93 -0.42 0.83 16 35 H 0.09 1.29 8.14 -51.92 -0.42 0.87 16 LS Contribution 281.39 15.07 4.24 4.24 Total: -1.00 -28.73 281.39 -9.19 -37.92 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -5.71 Total: 1.54 kcal Atomic # 6 Polarization: -19.57 SS G_CDS: -2.34 Total: -21.91 kcal Atomic # 7 Polarization: -38.19 SS G_CDS: -0.36 Total: -38.55 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -5.02 Total: 16.77 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -28.73 -9.19 -37.92 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070064215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 85.597 kcal (2) G-P(sol) polarization free energy of solvation -28.726 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.191 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.917 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds