Wall clock time and date at job start Sun Mar 29 2020 22:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86796 * 119.99904 * 2 1 4 4 H 1.48504 * 109.47002 * 90.00080 * 3 2 1 5 5 H 1.48498 * 109.47482 * 210.00588 * 3 2 1 6 6 H 1.48499 * 109.47244 * 330.00340 * 3 2 1 7 7 C 1.37878 * 120.00017 * 180.27873 * 2 1 3 8 8 H 1.08007 * 119.99473 * 179.97438 * 7 2 1 9 9 C 1.50693 * 120.00338 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47353 * 180.02562 * 9 7 2 11 11 C 1.46898 * 111.00319 * 170.00045 * 10 9 7 12 12 C 1.52999 * 109.47541 * 195.88975 * 11 10 9 13 13 C 1.53001 * 117.49963 * 244.28471 * 12 11 10 14 14 C 1.53002 * 117.50157 * 175.62402 * 12 11 10 15 15 C 1.46899 * 110.99971 * 293.95193 * 10 9 7 16 16 C 1.52998 * 109.47531 * 294.80713 * 15 10 9 17 17 C 1.52992 * 117.50132 * 244.92625 * 16 15 10 18 18 C 1.52997 * 117.50352 * 176.26555 * 16 15 10 19 19 H 0.97000 * 120.00561 * 359.71698 * 1 2 3 20 20 H 1.08997 * 109.47157 * 299.99991 * 9 7 2 21 21 H 1.09003 * 109.47355 * 59.99923 * 9 7 2 22 22 H 1.09004 * 109.47290 * 315.89088 * 11 10 9 23 23 H 1.09004 * 109.47433 * 75.88760 * 11 10 9 24 24 H 1.09004 * 115.54692 * 29.95125 * 12 11 10 25 25 H 1.09007 * 117.49973 * 359.97438 * 13 12 11 26 26 H 1.09002 * 117.50027 * 145.01779 * 13 12 11 27 27 H 1.08993 * 117.49872 * 214.97870 * 14 12 11 28 28 H 1.09004 * 117.49665 * 359.97438 * 14 12 11 29 29 H 1.09002 * 109.47280 * 54.80764 * 15 10 9 30 30 H 1.09005 * 109.47289 * 174.80364 * 15 10 9 31 31 H 1.09002 * 115.54927 * 30.59855 * 16 15 10 32 32 H 1.08999 * 117.50359 * 0.02562 * 17 16 15 33 33 H 1.09003 * 117.50177 * 145.01984 * 17 16 15 34 34 H 1.09002 * 117.50253 * 214.98712 * 18 16 15 35 35 H 1.09008 * 117.49725 * 359.97438 * 18 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0464 1.4001 5 1 3.5466 1.4403 -0.7001 6 1 1.4465 2.6527 -0.7000 7 6 2.0045 -1.1940 -0.0058 8 1 3.0846 -1.1939 -0.0062 9 6 1.2511 -2.4991 -0.0116 10 7 2.2057 -3.6156 -0.0165 11 6 1.5214 -4.8945 0.2160 12 6 2.5497 -5.9615 0.5965 13 6 2.7313 -7.1410 -0.3609 14 6 2.0226 -7.3457 0.9803 15 6 2.9710 -3.6484 -1.2700 16 6 2.0270 -3.9475 -2.4363 17 6 2.2297 -5.2636 -3.1896 18 6 2.6207 -3.9375 -3.8463 19 1 -0.4851 0.8400 0.0041 20 1 0.6248 -2.5610 0.8783 21 1 0.6241 -2.5528 -0.9016 22 1 0.8008 -4.7791 1.0258 23 1 1.0013 -5.1987 -0.6924 24 1 3.4340 -5.5969 1.1193 25 1 2.1178 -7.1570 -1.2618 26 1 3.7349 -7.5527 -0.4678 27 1 2.5603 -7.8918 1.7553 28 1 0.9431 -7.4960 0.9621 29 1 3.4498 -2.6821 -1.4288 30 1 3.7327 -4.4259 -1.2105 31 1 1.0049 -3.5875 -2.3181 32 1 3.0352 -5.9167 -2.8541 33 1 1.3410 -5.7694 -3.5673 34 1 1.9893 -3.5711 -4.6558 35 1 3.6840 -3.7173 -3.9431 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070064215.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:24 Heat of formation + Delta-G solvation = 30.985003 kcal Electronic energy + Delta-G solvation = -14126.394231 eV Core-core repulsion = 11932.162306 eV Total energy + Delta-G solvation = -2194.231926 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -39.95454 -37.71743 -36.32069 -34.42813 -29.57742 -28.43370 -25.84077 -23.62939 -23.22261 -22.83553 -21.69864 -20.36203 -18.38228 -17.21467 -16.79595 -16.14294 -15.81877 -15.59125 -14.91602 -14.69602 -14.10789 -13.55122 -13.21042 -12.88977 -12.83187 -12.57620 -12.51091 -12.34709 -12.21577 -12.16882 -11.89823 -11.41933 -11.16622 -10.98629 -10.70407 -10.67315 -10.53108 -8.89558 -8.18533 -6.27628 1.40373 1.41932 1.52871 2.40862 2.94782 3.01049 3.13804 3.37777 3.89373 4.00459 4.11035 4.14645 4.16797 4.29255 4.47673 4.59791 4.76517 4.78187 4.84794 4.85285 4.93317 5.03681 5.06276 5.10341 5.25278 5.28941 5.34044 5.35580 5.43401 5.47567 5.68376 6.09673 6.41853 6.72123 6.88961 7.41415 8.92452 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.032808 B = 0.008885 C = 0.007687 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 853.251964 B = 3150.545247 C = 3641.802833 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C 0.000 4.000 3 Si 0.967 3.033 4 H -0.274 1.274 5 H -0.264 1.264 6 H -0.283 1.283 7 C -0.517 4.517 8 H 0.061 0.939 9 C 0.207 3.793 10 N -0.539 5.539 11 C 0.087 3.913 12 C -0.153 4.153 13 C -0.169 4.169 14 C -0.172 4.172 15 C 0.105 3.895 16 C -0.198 4.198 17 C -0.157 4.157 18 C -0.174 4.174 19 H 0.263 0.737 20 H -0.005 1.005 21 H -0.028 1.028 22 H 0.047 0.953 23 H 0.034 0.966 24 H 0.099 0.901 25 H 0.095 0.905 26 H 0.106 0.894 27 H 0.107 0.893 28 H 0.091 0.909 29 H 0.055 0.945 30 H 0.080 0.920 31 H 0.068 0.932 32 H 0.110 0.890 33 H 0.094 0.906 34 H 0.091 0.909 35 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.725 -12.444 -3.949 14.256 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.577 5.577 2 C -0.197 4.197 3 Si 0.792 3.208 4 H -0.199 1.199 5 H -0.188 1.188 6 H -0.208 1.208 7 C -0.556 4.556 8 H 0.079 0.921 9 C 0.080 3.920 10 N -0.261 5.261 11 C -0.041 4.041 12 C -0.172 4.172 13 C -0.206 4.206 14 C -0.210 4.210 15 C -0.023 4.023 16 C -0.218 4.218 17 C -0.193 4.193 18 C -0.211 4.211 19 H 0.072 0.928 20 H 0.013 0.987 21 H -0.010 1.010 22 H 0.066 0.934 23 H 0.052 0.948 24 H 0.117 0.883 25 H 0.113 0.887 26 H 0.124 0.876 27 H 0.125 0.875 28 H 0.110 0.890 29 H 0.073 0.927 30 H 0.099 0.901 31 H 0.086 0.914 32 H 0.128 0.872 33 H 0.113 0.887 34 H 0.109 0.891 35 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges 5.909 -12.252 -3.546 14.057 hybrid contribution -0.820 1.136 -0.483 1.482 sum 5.089 -11.116 -4.029 12.872 Atomic orbital electron populations 1.70087 1.07696 1.27727 1.52151 1.25889 0.95722 1.03099 0.95004 0.85418 0.78596 0.78431 0.78397 1.19924 1.18831 1.20814 1.21449 0.93491 0.91139 1.49485 0.92109 1.19374 0.90331 0.88956 0.93291 1.62205 1.27353 1.02681 1.33852 1.21589 0.94758 0.89191 0.98598 1.22118 1.00987 0.88935 1.05156 1.23132 1.02387 1.01224 0.93863 1.23018 1.00731 0.98090 0.99151 1.21556 0.94763 1.00653 0.85323 1.22823 1.00365 1.03563 0.95040 1.23084 1.03443 0.90005 1.02805 1.22943 1.01805 1.01640 0.94735 0.92825 0.98739 1.01024 0.93423 0.94821 0.88296 0.88698 0.87611 0.87464 0.89020 0.92673 0.90143 0.91366 0.87211 0.88714 0.89079 0.87915 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -57.47 13.29 21.45 0.28 -57.18 16 2 C 0.00 0.02 5.46 84.66 0.46 0.49 16 3 Si 0.97 45.19 29.54 68.60 2.03 47.21 16 4 H -0.27 -12.42 7.11 99.48 0.71 -11.72 16 5 H -0.26 -11.82 7.11 99.48 0.71 -11.12 16 6 H -0.28 -12.88 7.11 99.48 0.71 -12.17 16 7 C -0.52 -29.99 8.44 25.60 0.22 -29.77 16 8 H 0.06 3.47 7.13 -2.91 -0.02 3.44 16 9 C 0.21 11.32 4.57 85.56 0.39 11.71 16 10 N -0.54 -23.88 4.66 -900.81 -4.20 -28.08 16 11 C 0.09 3.23 5.10 86.30 0.44 3.67 16 12 C -0.15 -4.48 5.13 -10.79 -0.06 -4.53 16 13 C -0.17 -3.80 9.86 30.62 0.30 -3.50 16 14 C -0.17 -3.94 10.25 30.62 0.31 -3.63 16 15 C 0.11 4.11 5.31 86.30 0.46 4.56 16 16 C -0.20 -7.10 3.97 -10.80 -0.04 -7.14 16 17 C -0.16 -4.13 9.35 30.61 0.29 -3.85 16 18 C -0.17 -5.02 10.25 30.62 0.31 -4.71 16 19 H 0.26 15.19 8.31 -92.71 -0.77 14.42 16 20 H -0.01 -0.33 7.86 -2.39 -0.02 -0.35 16 21 H -0.03 -1.63 6.11 -2.39 -0.01 -1.65 16 22 H 0.05 1.90 7.81 -2.38 -0.02 1.88 16 23 H 0.03 1.23 6.26 -2.38 -0.01 1.22 16 24 H 0.10 3.07 8.14 -2.39 -0.02 3.05 16 25 H 0.09 2.11 6.88 -2.38 -0.02 2.10 16 26 H 0.11 2.00 8.14 -2.39 -0.02 1.98 16 27 H 0.11 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.09 2.06 8.14 -2.39 -0.02 2.04 16 29 H 0.05 2.42 6.73 -2.39 -0.02 2.40 16 30 H 0.08 2.71 7.27 -2.38 -0.02 2.69 16 31 H 0.07 2.97 6.27 -2.39 -0.01 2.95 16 32 H 0.11 2.52 7.27 -2.39 -0.02 2.50 16 33 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 34 H 0.09 2.53 8.14 -2.39 -0.02 2.51 16 35 H 0.10 2.71 8.14 -2.38 -0.02 2.69 16 Total: -1.00 -63.78 281.39 2.24 -61.53 By element: Atomic # 1 Polarization: 12.16 SS G_CDS: 1.04 Total: 13.20 kcal Atomic # 6 Polarization: -39.78 SS G_CDS: 3.09 Total: -36.69 kcal Atomic # 7 Polarization: -81.35 SS G_CDS: -3.91 Total: -85.26 kcal Atomic # 14 Polarization: 45.19 SS G_CDS: 2.03 Total: 47.21 kcal Total: -63.78 2.24 -61.53 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070064215.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 92.519 kcal (2) G-P(sol) polarization free energy of solvation -63.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.534 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds