Wall clock time and date at job start Sun Mar 29 2020 21:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35320 * 126.12416 * 2 1 4 4 C 1.39878 * 107.92006 * 179.97438 * 3 2 1 5 5 N 1.30842 * 108.19619 * 359.73970 * 4 3 2 6 6 N 1.34944 * 126.12998 * 179.97438 * 2 1 3 7 7 C 1.46497 * 126.03758 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47128 * 90.00108 * 7 6 2 9 9 O 1.21292 * 119.99931 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.37090 * 119.99722 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00228 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99996 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99860 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 90.00074 * 15 13 11 17 17 H 1.48495 * 109.47293 * 210.00276 * 15 13 11 18 18 H 1.48502 * 109.47297 * 330.00060 * 15 13 11 19 19 H 1.09002 * 109.46765 * 270.02774 * 1 2 3 20 20 H 1.09000 * 109.47343 * 30.02379 * 1 2 3 21 21 H 1.08995 * 109.46984 * 150.02840 * 1 2 3 22 22 H 1.07993 * 126.04223 * 359.97438 * 3 2 1 23 23 H 1.07989 * 125.89874 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.47268 * 330.00248 * 7 6 2 25 25 H 1.08997 * 109.47471 * 210.00655 * 7 6 2 26 26 H 0.96995 * 120.00015 * 359.72695 * 10 8 7 27 27 H 0.97000 * 120.00310 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 0.0006 5 7 3.6334 -0.6524 0.0066 6 7 2.3027 -1.0899 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 1.9412 -2.2142 -2.3413 10 7 1.2933 -4.2252 -1.6640 11 6 1.1525 -4.6610 -2.9562 12 1 1.3675 -3.9936 -3.7776 13 6 0.7340 -5.9616 -3.2091 14 7 0.4728 -6.7739 -2.2096 15 14 0.5427 -6.5556 -4.9697 16 1 1.8249 -7.1418 -5.4364 17 1 -0.5243 -7.5865 -5.0312 18 1 0.1756 -5.4107 -5.8413 19 1 -0.3633 0.0005 1.0277 20 1 -0.3634 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 1.9740 2.1211 -0.0004 23 1 4.5083 1.2892 0.0004 24 1 0.8957 -2.5575 0.5158 25 1 2.5901 -3.1026 0.5157 26 1 1.1040 -4.8258 -0.9263 27 1 0.1811 -7.6820 -2.3860 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070688271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:28 Heat of formation + Delta-G solvation = 36.908956 kcal Electronic energy + Delta-G solvation = -13310.057012 eV Core-core repulsion = 10876.708530 eV Total energy + Delta-G solvation = -2433.348482 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.82790 -38.14062 -34.13902 -32.86841 -31.69547 -31.26765 -27.29657 -26.61435 -24.58076 -20.90189 -20.17450 -18.93755 -17.97211 -16.39326 -16.13100 -14.77109 -14.63345 -14.13651 -14.01472 -13.46929 -13.24542 -12.72741 -12.64476 -12.25881 -11.75933 -11.66793 -11.61545 -11.10960 -10.45954 -10.32107 -10.20562 -9.62809 -9.16001 -8.49939 -8.09950 -8.01629 -6.52202 -3.93758 2.26675 2.89363 3.11410 3.21848 3.23100 3.27964 3.69946 4.10404 4.80801 4.92918 4.98736 5.21157 5.34626 5.48364 5.63774 5.64795 5.94816 6.00489 6.09407 6.12883 6.49940 7.04897 7.39564 7.45803 7.92103 8.14865 8.46523 9.05609 9.37432 9.87733 10.64829 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060219 B = 0.007161 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.857451 B = 3909.289705 C = 3944.621953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.096 3.904 3 C -0.287 4.287 4 C 0.037 3.963 5 N -0.290 5.290 6 N -0.338 5.338 7 C 0.117 3.883 8 C 0.420 3.580 9 O -0.577 6.577 10 N -0.554 5.554 11 C -0.302 4.302 12 H 0.104 0.896 13 C 0.026 3.974 14 N -0.898 5.898 15 Si 0.932 3.068 16 H -0.277 1.277 17 H -0.282 1.282 18 H -0.269 1.269 19 H 0.076 0.924 20 H 0.082 0.918 21 H 0.073 0.927 22 H 0.141 0.859 23 H 0.178 0.822 24 H 0.106 0.894 25 H 0.109 0.891 26 H 0.394 0.606 27 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.105 8.367 6.639 10.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.033 4.033 3 C -0.316 4.316 4 C -0.148 4.148 5 N -0.111 5.111 6 N -0.120 5.120 7 C -0.008 4.008 8 C 0.205 3.795 9 O -0.461 6.461 10 N -0.190 5.190 11 C -0.431 4.431 12 H 0.122 0.878 13 C -0.177 4.177 14 N -0.538 5.538 15 Si 0.759 3.241 16 H -0.203 1.203 17 H -0.208 1.208 18 H -0.193 1.193 19 H 0.094 0.906 20 H 0.101 0.899 21 H 0.092 0.908 22 H 0.159 0.841 23 H 0.195 0.805 24 H 0.124 0.876 25 H 0.128 0.872 26 H 0.227 0.773 27 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.336 7.456 6.018 9.587 hybrid contribution -0.650 -0.077 -0.475 0.809 sum -0.986 7.379 5.543 9.282 Atomic orbital electron populations 1.20434 0.87813 1.04231 1.02631 1.21017 0.94584 0.87374 1.00291 1.21072 0.92432 0.98456 1.19664 1.23689 0.97871 0.92315 1.00964 1.77321 0.96950 1.12916 1.23903 1.47971 1.03656 1.04990 1.55363 1.21444 1.01676 0.79140 0.98588 1.19966 0.85744 0.84140 0.89700 1.90590 1.55213 1.55280 1.45010 1.41801 1.58124 1.09937 1.09182 1.19712 1.42636 0.96731 0.84046 0.87843 1.25289 0.96775 0.95731 0.99865 1.69603 1.45456 1.07427 1.31361 0.85821 0.78070 0.78558 0.81658 1.20260 1.20777 1.19332 0.90567 0.89873 0.90787 0.84117 0.80549 0.87570 0.87244 0.77254 0.91647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.22 9.90 36.01 0.36 -0.86 15 2 C 0.10 1.62 6.93 -82.26 -0.57 1.05 15 3 C -0.29 -4.51 10.72 -40.01 -0.43 -4.94 15 4 C 0.04 0.62 12.03 -17.36 -0.21 0.41 15 5 N -0.29 -5.79 12.58 30.63 0.39 -5.40 15 6 N -0.34 -6.52 3.10 -58.31 -0.18 -6.70 15 7 C 0.12 2.14 6.54 -5.20 -0.03 2.11 15 8 C 0.42 10.02 7.85 -10.98 -0.09 9.94 15 9 O -0.58 -16.31 16.01 5.55 0.09 -16.22 15 10 N -0.55 -13.79 5.29 -10.96 -0.06 -13.84 15 11 C -0.30 -8.33 9.68 -14.93 -0.14 -8.48 15 12 H 0.10 3.03 7.16 -52.49 -0.38 2.66 15 13 C 0.03 0.68 5.50 -17.47 -0.10 0.58 15 14 N -0.90 -23.84 13.05 55.50 0.72 -23.12 15 15 Si 0.93 20.79 29.55 -169.99 -5.02 15.77 15 16 H -0.28 -6.14 7.11 56.52 0.40 -5.74 15 17 H -0.28 -6.12 7.11 56.52 0.40 -5.72 15 18 H -0.27 -6.01 7.11 56.52 0.40 -5.60 15 19 H 0.08 0.79 8.14 -51.93 -0.42 0.37 15 20 H 0.08 0.95 8.14 -51.93 -0.42 0.53 15 21 H 0.07 1.08 7.72 -51.93 -0.40 0.67 15 22 H 0.14 1.77 8.06 -52.49 -0.42 1.34 15 23 H 0.18 2.20 8.06 -52.49 -0.42 1.78 15 24 H 0.11 1.55 7.66 -51.93 -0.40 1.15 15 25 H 0.11 1.81 8.14 -51.93 -0.42 1.39 15 26 H 0.39 9.15 7.90 -40.82 -0.32 8.83 15 27 H 0.27 6.87 8.31 -40.82 -0.34 6.53 15 LS Contribution 249.33 15.07 3.76 3.76 Total: -1.00 -33.51 249.33 -4.26 -37.77 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: -2.75 Total: 8.18 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: -1.21 Total: -0.19 kcal Atomic # 7 Polarization: -49.94 SS G_CDS: 0.87 Total: -49.07 kcal Atomic # 8 Polarization: -16.31 SS G_CDS: 0.09 Total: -16.22 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.02 Total: 15.77 kcal Total LS contribution 3.76 Total: 3.76 kcal Total: -33.51 -4.26 -37.77 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070688271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.681 kcal (2) G-P(sol) polarization free energy of solvation -33.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.173 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.264 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.772 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds