Wall clock time and date at job start Sun Mar 29 2020 21:26:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.35320 * 126.12416 * 2 1 4 4 C 1.39878 * 107.92006 * 179.97438 * 3 2 1 5 5 N 1.30842 * 108.19619 * 359.73970 * 4 3 2 6 6 N 1.34944 * 126.12998 * 179.97438 * 2 1 3 7 7 C 1.46497 * 126.03758 * 359.97438 * 6 2 1 8 8 C 1.50700 * 109.47128 * 90.00108 * 7 6 2 9 9 O 1.21292 * 119.99931 * 0.02562 * 8 7 6 10 10 N 1.34784 * 119.99961 * 180.02562 * 8 7 6 11 11 C 1.37090 * 119.99722 * 179.97438 * 10 8 7 12 12 H 1.07999 * 120.00228 * 0.02562 * 11 10 8 13 13 C 1.38955 * 119.99996 * 179.97438 * 11 10 8 14 14 N 1.31411 * 119.99860 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00198 * 180.02562 * 13 11 10 16 16 H 1.48501 * 109.47088 * 90.00074 * 15 13 11 17 17 H 1.48495 * 109.47293 * 210.00276 * 15 13 11 18 18 H 1.48502 * 109.47297 * 330.00060 * 15 13 11 19 19 H 1.09002 * 109.46765 * 270.02774 * 1 2 3 20 20 H 1.09000 * 109.47343 * 30.02379 * 1 2 3 21 21 H 1.08995 * 109.46984 * 150.02840 * 1 2 3 22 22 H 1.07993 * 126.04223 * 359.97438 * 3 2 1 23 23 H 1.07989 * 125.89874 * 179.97438 * 4 3 2 24 24 H 1.09004 * 109.47268 * 330.00248 * 7 6 2 25 25 H 1.08997 * 109.47471 * 210.00655 * 7 6 2 26 26 H 0.96995 * 120.00015 * 359.72695 * 10 8 7 27 27 H 0.97000 * 120.00310 * 180.02562 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3048 1.0930 0.0000 4 6 3.6335 0.6561 0.0006 5 7 3.6334 -0.6524 0.0066 6 7 2.3027 -1.0899 0.0005 7 6 1.8540 -2.4845 0.0016 8 6 1.6997 -2.9637 -1.4188 9 8 1.9412 -2.2142 -2.3413 10 7 1.2933 -4.2252 -1.6640 11 6 1.1525 -4.6610 -2.9562 12 1 1.3675 -3.9936 -3.7776 13 6 0.7340 -5.9616 -3.2091 14 7 0.4728 -6.7739 -2.2096 15 14 0.5427 -6.5556 -4.9697 16 1 1.8249 -7.1418 -5.4364 17 1 -0.5243 -7.5865 -5.0312 18 1 0.1756 -5.4107 -5.8413 19 1 -0.3633 0.0005 1.0277 20 1 -0.3634 0.8898 -0.5142 21 1 -0.3633 -0.8902 -0.5134 22 1 1.9740 2.1211 -0.0004 23 1 4.5083 1.2892 0.0004 24 1 0.8957 -2.5575 0.5158 25 1 2.5901 -3.1026 0.5157 26 1 1.1040 -4.8258 -0.9263 27 1 0.1811 -7.6820 -2.3860 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070688271.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:28 Heat of formation + Delta-G solvation = 12.546506 kcal Electronic energy + Delta-G solvation = -13311.113447 eV Core-core repulsion = 10876.708530 eV Total energy + Delta-G solvation = -2434.404917 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.13793 -40.04189 -36.13403 -34.31133 -33.36480 -32.82664 -28.86791 -27.78597 -26.46491 -22.33255 -21.68740 -20.56668 -19.85360 -18.12991 -17.53872 -16.66607 -16.18875 -15.80510 -15.60360 -14.92710 -14.60137 -14.32323 -13.76817 -13.57611 -13.49074 -13.21198 -12.88894 -12.85349 -12.50183 -12.15038 -11.60972 -11.50230 -10.85688 -10.12183 -10.06849 -9.36106 -8.54026 -6.04083 0.95104 1.33158 1.39891 1.51534 1.60687 1.87195 2.00820 2.26565 3.07408 3.11277 3.72167 3.84233 4.13049 4.19244 4.28208 4.41260 4.72655 4.85149 4.88337 5.03632 5.32056 5.34189 5.79970 5.88929 6.15405 6.48714 6.85521 7.02542 7.40334 7.95495 8.62436 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.060219 B = 0.007161 C = 0.007097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 464.857451 B = 3909.289705 C = 3944.621953 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.080 3.920 3 C -0.290 4.290 4 C 0.038 3.962 5 N -0.342 5.342 6 N -0.360 5.360 7 C 0.127 3.873 8 C 0.420 3.580 9 O -0.627 6.627 10 N -0.558 5.558 11 C -0.338 4.338 12 H 0.076 0.924 13 C -0.005 4.005 14 N -0.913 5.913 15 Si 0.993 3.007 16 H -0.272 1.272 17 H -0.266 1.266 18 H -0.274 1.274 19 H 0.108 0.892 20 H 0.100 0.900 21 H 0.055 0.945 22 H 0.174 0.826 23 H 0.211 0.789 24 H 0.146 0.854 25 H 0.125 0.875 26 H 0.401 0.599 27 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.782 8.856 7.246 11.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.048 4.048 3 C -0.318 4.318 4 C -0.147 4.147 5 N -0.163 5.163 6 N -0.142 5.142 7 C 0.002 3.998 8 C 0.206 3.794 9 O -0.514 6.514 10 N -0.195 5.195 11 C -0.468 4.468 12 H 0.094 0.906 13 C -0.206 4.206 14 N -0.553 5.553 15 Si 0.816 3.184 16 H -0.198 1.198 17 H -0.190 1.190 18 H -0.199 1.199 19 H 0.126 0.874 20 H 0.119 0.881 21 H 0.074 0.926 22 H 0.191 0.809 23 H 0.228 0.772 24 H 0.163 0.837 25 H 0.143 0.857 26 H 0.236 0.764 27 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -1.022 7.934 6.662 10.410 hybrid contribution -0.421 -0.145 -0.636 0.776 sum -1.443 7.789 6.027 9.954 Atomic orbital electron populations 1.20559 0.85411 1.04164 1.04653 1.21797 0.96348 0.87181 0.99463 1.21553 0.91903 0.99784 1.18605 1.24392 0.99691 0.91743 0.98920 1.77252 0.98032 1.14802 1.26226 1.48103 1.03902 1.05433 1.56808 1.21414 1.04221 0.79574 0.94596 1.20938 0.83580 0.83130 0.91743 1.90547 1.56911 1.56461 1.47454 1.41817 1.58439 1.10647 1.08599 1.19621 1.45088 0.97353 0.84698 0.90623 1.26027 0.95675 0.95188 1.03717 1.69647 1.44950 1.07804 1.32857 0.84930 0.78473 0.78014 0.76945 1.19757 1.19044 1.19858 0.87401 0.88084 0.92634 0.80886 0.77233 0.83656 0.85673 0.76432 0.90939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -2.15 9.90 71.24 0.71 -1.44 15 2 C 0.08 2.56 6.93 41.41 0.29 2.85 15 3 C -0.29 -8.44 10.72 21.99 0.24 -8.21 15 4 C 0.04 1.20 12.03 85.24 1.03 2.22 15 5 N -0.34 -13.49 12.58 -57.02 -0.72 -14.21 15 6 N -0.36 -13.60 3.10 -338.41 -1.05 -14.65 15 7 C 0.13 4.56 6.54 85.63 0.56 5.12 15 8 C 0.42 20.31 7.85 87.66 0.69 21.00 15 9 O -0.63 -36.45 16.01 -3.07 -0.05 -36.50 15 10 N -0.56 -28.22 5.29 -306.98 -1.62 -29.84 15 11 C -0.34 -19.09 9.68 84.04 0.81 -18.27 15 12 H 0.08 4.62 7.16 -2.91 -0.02 4.60 15 13 C -0.01 -0.27 5.50 84.93 0.47 0.20 15 14 N -0.91 -47.86 13.05 21.66 0.28 -47.58 15 15 Si 0.99 42.33 29.55 68.60 2.03 44.36 15 16 H -0.27 -11.37 7.11 99.48 0.71 -10.66 15 17 H -0.27 -10.59 7.11 99.48 0.71 -9.88 15 18 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 19 H 0.11 1.88 8.14 -2.39 -0.02 1.86 15 20 H 0.10 2.03 8.14 -2.39 -0.02 2.01 15 21 H 0.05 1.54 7.72 -2.39 -0.02 1.52 15 22 H 0.17 3.73 8.06 -2.91 -0.02 3.71 15 23 H 0.21 4.76 8.06 -2.92 -0.02 4.73 15 24 H 0.15 3.96 7.66 -2.38 -0.02 3.95 15 25 H 0.13 4.04 8.14 -2.39 -0.02 4.02 15 26 H 0.40 18.73 7.90 -92.71 -0.73 18.00 15 27 H 0.28 13.74 8.31 -92.71 -0.77 12.97 15 Total: -1.00 -73.34 249.33 4.11 -69.23 By element: Atomic # 1 Polarization: 25.27 SS G_CDS: 0.46 Total: 25.73 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 4.78 Total: 3.46 kcal Atomic # 7 Polarization: -103.18 SS G_CDS: -3.11 Total: -106.28 kcal Atomic # 8 Polarization: -36.45 SS G_CDS: -0.05 Total: -36.50 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -73.34 4.11 -69.23 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070688271.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.780 kcal (2) G-P(sol) polarization free energy of solvation -73.343 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.437 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.233 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.547 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds