Wall clock time and date at job start Sun Mar 29 2020 21:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36879 * 126.39302 * 2 1 4 4 C 1.34669 * 106.81810 * 180.02562 * 3 2 1 5 5 N 1.34129 * 108.01664 * 359.77998 * 4 3 2 6 6 C 1.30502 * 109.25795 * 0.36671 * 5 4 3 7 7 C 1.50699 * 125.64910 * 179.89969 * 6 5 4 8 8 N 1.46499 * 109.46700 * 269.68827 * 7 6 5 9 9 C 1.34784 * 119.99893 * 180.02562 * 8 7 6 10 10 O 1.21682 * 119.99954 * 359.97438 * 9 8 7 11 11 C 1.46368 * 119.99916 * 179.72943 * 9 8 7 12 12 H 1.07998 * 120.00437 * 359.97438 * 11 9 8 13 13 C 1.40055 * 119.99853 * 179.97438 * 11 9 8 14 14 N 1.30662 * 119.99894 * 359.97438 * 13 11 9 15 15 Si 1.86805 * 119.99877 * 179.97438 * 13 11 9 16 16 H 1.48504 * 109.47029 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47165 * 120.00059 * 15 13 11 18 18 H 1.48495 * 109.46978 * 240.00192 * 15 13 11 19 19 H 1.09001 * 109.47032 * 269.97764 * 1 2 3 20 20 H 1.08997 * 109.47135 * 29.97495 * 1 2 3 21 21 H 1.08997 * 109.46609 * 149.98392 * 1 2 3 22 22 H 1.08000 * 126.59593 * 0.04978 * 3 2 1 23 23 H 1.07996 * 125.99373 * 180.02562 * 4 3 2 24 24 H 1.08998 * 109.46743 * 149.69303 * 7 6 5 25 25 H 1.08994 * 109.47542 * 29.69162 * 7 6 5 26 26 H 0.97005 * 120.00261 * 0.02562 * 8 7 6 27 27 H 0.97000 * 120.00244 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2772 1.1018 0.0000 4 6 3.5461 0.6506 -0.0006 5 7 3.5096 -0.6902 0.0040 6 6 2.2664 -1.0869 -0.0005 7 6 1.8020 -2.5206 0.0002 8 7 1.6502 -2.9853 -1.3808 9 6 1.2411 -4.2458 -1.6266 10 8 0.9983 -4.9980 -0.7014 11 6 1.0837 -4.7083 -3.0063 12 1 1.2950 -4.0395 -3.8275 13 6 0.6592 -6.0183 -3.2617 14 7 0.4040 -6.8277 -2.2682 15 14 0.4577 -6.6083 -5.0226 16 1 0.8066 -5.5076 -5.9564 17 1 1.3566 -7.7656 -5.2628 18 1 -0.9510 -7.0204 -5.2484 19 1 -0.3633 -0.0004 1.0277 20 1 -0.3633 0.8902 -0.5134 21 1 -0.3632 -0.8898 -0.5141 22 1 1.9612 2.1346 0.0008 23 1 4.4368 1.2613 -0.0003 24 1 0.8438 -2.5918 0.5149 25 1 2.5370 -3.1404 0.5134 26 1 1.8441 -2.3859 -2.1184 27 1 0.1096 -7.7349 -2.4450 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071276170.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:17 Heat of formation + Delta-G solvation = -4.391739 kcal Electronic energy + Delta-G solvation = -13209.592521 eV Core-core repulsion = 10774.453107 eV Total energy + Delta-G solvation = -2435.139414 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -43.06860 -39.37151 -35.46810 -34.92533 -34.46653 -31.22876 -28.78011 -27.89670 -26.44321 -22.31168 -21.91826 -21.01150 -19.33080 -17.92099 -17.45625 -16.82829 -16.00808 -15.89413 -15.82222 -14.87536 -14.57192 -14.31649 -13.85023 -13.65038 -13.40594 -13.29206 -13.08259 -12.74402 -12.64477 -11.98129 -10.98221 -10.95363 -10.61355 -10.01834 -9.60557 -9.36552 -8.30546 -6.88011 0.97712 1.40721 1.41576 1.59360 1.86275 2.07297 2.26972 2.44716 3.15973 3.42992 3.58233 3.88378 3.96904 4.36838 4.39385 4.53882 4.61252 4.68385 4.81937 5.31025 5.32956 5.82480 5.82987 6.05297 6.14745 6.23104 6.85024 7.12715 7.44118 8.43366 8.64435 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.055251 B = 0.006935 C = 0.006848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 506.653610 B = 4036.784719 C = 4087.840730 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.063 3.937 2 N -0.449 5.449 3 C -0.034 4.034 4 C -0.059 4.059 5 N -0.518 5.518 6 C 0.174 3.826 7 C 0.226 3.774 8 N -0.748 5.748 9 C 0.541 3.459 10 O -0.628 6.628 11 C -0.570 4.570 12 H 0.085 0.915 13 C 0.030 3.970 14 N -0.819 5.819 15 Si 1.000 3.000 16 H -0.249 1.249 17 H -0.269 1.269 18 H -0.265 1.265 19 H 0.094 0.906 20 H 0.121 0.879 21 H 0.074 0.926 22 H 0.222 0.778 23 H 0.193 0.807 24 H 0.065 0.935 25 H 0.054 0.946 26 H 0.391 0.609 27 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.378 15.869 0.114 15.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 N -0.131 5.131 3 C -0.168 4.168 4 C -0.207 4.207 5 N -0.239 5.239 6 C -0.088 4.088 7 C 0.100 3.900 8 N -0.403 5.403 9 C 0.346 3.654 10 O -0.515 6.515 11 C -0.607 4.607 12 H 0.104 0.896 13 C -0.185 4.185 14 N -0.448 5.448 15 Si 0.819 3.181 16 H -0.172 1.172 17 H -0.194 1.194 18 H -0.190 1.190 19 H 0.112 0.888 20 H 0.139 0.861 21 H 0.093 0.907 22 H 0.238 0.762 23 H 0.210 0.790 24 H 0.083 0.917 25 H 0.072 0.928 26 H 0.224 0.776 27 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -1.111 14.649 0.898 14.718 hybrid contribution -0.506 0.254 -0.636 0.852 sum -1.618 14.902 0.262 14.992 Atomic orbital electron populations 1.22363 0.74457 1.05908 1.05086 1.45559 1.09031 1.06013 1.52470 1.23426 0.90428 0.93730 1.09250 1.22879 0.98540 0.90143 1.09166 1.70195 1.19530 1.14311 1.19851 1.22857 0.86329 0.90748 1.08861 1.18894 0.99396 0.85352 0.86359 1.45856 1.74280 1.14428 1.05745 1.18608 0.76485 0.79599 0.90747 1.90560 1.57289 1.55946 1.47689 1.21407 1.48898 0.99133 0.91262 0.89647 1.26964 0.91680 0.96000 1.03879 1.70176 1.33073 1.06371 1.35218 0.84942 0.78673 0.78793 0.75689 1.17191 1.19407 1.19017 0.88767 0.86090 0.90714 0.76152 0.79024 0.91680 0.92824 0.77566 0.91402 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 1.18 10.79 127.77 1.38 2.56 15 2 N -0.45 -11.76 3.15 -537.60 -1.69 -13.46 15 3 C -0.03 -0.73 11.58 83.09 0.96 0.23 15 4 C -0.06 -1.60 11.87 83.52 0.99 -0.61 15 5 N -0.52 -19.13 11.25 -188.14 -2.12 -21.25 15 6 C 0.17 6.17 7.27 138.13 1.00 7.17 15 7 C 0.23 9.55 5.76 85.63 0.49 10.04 15 8 N -0.75 -35.39 5.54 -471.16 -2.61 -38.00 15 9 C 0.54 31.90 7.75 86.36 0.67 32.57 15 10 O -0.63 -42.34 15.02 -4.29 -0.06 -42.40 15 11 C -0.57 -32.69 9.54 24.83 0.24 -32.45 15 12 H 0.09 4.43 7.85 -2.91 -0.02 4.41 15 13 C 0.03 1.68 5.50 85.31 0.47 2.15 15 14 N -0.82 -50.10 11.83 21.84 0.26 -49.84 15 15 Si 1.00 40.96 29.56 68.60 2.03 42.99 15 16 H -0.25 -9.48 7.11 99.48 0.71 -8.78 15 17 H -0.27 -10.67 7.11 99.48 0.71 -9.97 15 18 H -0.27 -10.33 7.11 99.48 0.71 -9.63 15 19 H 0.09 1.45 8.14 -2.39 -0.02 1.43 15 20 H 0.12 1.39 8.14 -2.39 -0.02 1.37 15 21 H 0.07 1.74 7.66 -2.39 -0.02 1.72 15 22 H 0.22 2.41 8.06 -2.91 -0.02 2.38 15 23 H 0.19 3.93 8.06 -2.91 -0.02 3.90 15 24 H 0.07 2.67 7.71 -2.39 -0.02 2.65 15 25 H 0.05 2.52 8.14 -2.39 -0.02 2.50 15 26 H 0.39 16.91 8.44 -92.70 -0.78 16.13 15 27 H 0.28 15.18 8.29 -92.71 -0.77 14.41 15 Total: -1.00 -80.16 248.22 2.41 -77.76 By element: Atomic # 1 Polarization: 22.14 SS G_CDS: 0.40 Total: 22.55 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.20 Total: 21.66 kcal Atomic # 7 Polarization: -116.38 SS G_CDS: -6.17 Total: -122.55 kcal Atomic # 8 Polarization: -42.34 SS G_CDS: -0.06 Total: -42.40 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -80.16 2.41 -77.76 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071276170.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.364 kcal (2) G-P(sol) polarization free energy of solvation -80.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.799 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.407 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.755 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds