Wall clock time and date at job start Sun Mar 29 2020 21:32:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46499 * 120.00136 * 2 1 4 4 C 1.50703 * 109.47219 * 269.99493 * 3 2 1 5 5 N 1.30497 * 125.65285 * 274.69718 * 4 3 2 6 6 C 1.34124 * 109.25951 * 179.89391 * 5 4 3 7 7 C 1.34676 * 108.01781 * 0.36336 * 6 5 4 8 8 N 1.35046 * 125.64723 * 95.00136 * 4 3 2 9 9 H 0.97001 * 126.39361 * 359.97438 * 8 4 3 10 10 C 1.34784 * 119.99893 * 179.97438 * 2 1 3 11 11 O 1.21686 * 119.99841 * 179.72869 * 10 2 1 12 12 C 1.46368 * 119.99821 * 0.02562 * 10 2 1 13 13 H 1.07999 * 120.00129 * 359.97438 * 12 10 2 14 14 C 1.40045 * 119.99878 * 180.02562 * 12 10 2 15 15 N 1.30668 * 120.00214 * 0.02562 * 14 12 10 16 16 Si 1.86808 * 120.00091 * 179.97438 * 14 12 10 17 17 H 1.48501 * 109.46665 * 0.02562 * 16 14 12 18 18 H 1.48500 * 109.46869 * 119.99907 * 16 14 12 19 19 H 1.48493 * 109.47305 * 239.99962 * 16 14 12 20 20 H 1.08996 * 109.47008 * 270.00543 * 1 2 3 21 21 H 1.08997 * 109.46865 * 30.00228 * 1 2 3 22 22 H 1.08998 * 109.47058 * 149.99741 * 1 2 3 23 23 H 1.08998 * 109.47416 * 29.99674 * 3 2 1 24 24 H 1.09008 * 109.47058 * 150.00274 * 3 2 1 25 25 H 1.07993 * 125.99542 * 180.18625 * 6 5 4 26 26 H 1.08001 * 126.59240 * 179.81714 * 7 6 5 27 27 H 0.97000 * 120.00448 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4488 1.7037 -1.4208 5 7 3.4499 1.3239 -2.1668 6 6 3.3511 1.9075 -3.3704 7 6 2.2511 2.6845 -3.3676 8 7 1.6784 2.5556 -2.1311 9 1 0.8702 2.9943 -1.8225 10 6 2.1389 -1.1673 0.0005 11 8 3.3557 -1.1673 -0.0045 12 6 1.4070 -2.4348 0.0005 13 1 0.3270 -2.4348 0.0005 14 6 2.1072 -3.6477 0.0016 15 7 3.4138 -3.6478 0.0031 16 14 1.1731 -5.2655 0.0023 17 1 -0.2869 -4.9940 0.0010 18 1 1.5323 -6.0449 -1.2095 19 1 1.5313 -6.0434 1.2154 20 1 -0.3633 0.0001 1.0276 21 1 -0.3633 0.8900 -0.5139 22 1 -0.3633 -0.8899 -0.5139 23 1 1.6085 2.0284 0.5138 24 1 3.1500 1.1383 0.5138 25 1 4.0353 1.7792 -4.1960 26 1 1.8900 3.2920 -4.1842 27 1 3.8989 -4.4878 0.0035 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000080531178.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:32:43 Heat of formation + Delta-G solvation = 30.652500 kcal Electronic energy + Delta-G solvation = -13584.576591 eV Core-core repulsion = 11150.956809 eV Total energy + Delta-G solvation = -2433.619782 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.50934 -37.51907 -33.93867 -32.37552 -31.98853 -30.15988 -26.97649 -25.86992 -24.28466 -21.16915 -20.32394 -19.27720 -17.43539 -16.39506 -15.53601 -14.98263 -14.16793 -14.14242 -13.82353 -13.62520 -13.23181 -12.34076 -12.18954 -11.53786 -11.40793 -11.31483 -11.05753 -10.90126 -10.22559 -10.07703 -9.54102 -9.34199 -8.80787 -8.09105 -7.45476 -7.29390 -6.12267 -4.58604 2.43942 3.16140 3.23792 3.27830 3.50627 3.65375 4.15251 4.62702 4.71389 5.00885 5.36525 5.55804 5.77012 5.80449 5.92378 6.05692 6.31453 6.43559 6.48383 6.54190 7.18914 7.49642 7.55085 7.78779 8.13660 8.34864 8.70689 9.07967 9.44706 10.65018 10.84031 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.045804 B = 0.009035 C = 0.008527 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 611.158498 B = 3098.365619 C = 3282.859995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.103 3.897 2 N -0.643 5.643 3 C 0.206 3.794 4 C 0.209 3.791 5 N -0.461 5.461 6 C -0.031 4.031 7 C -0.076 4.076 8 N -0.572 5.572 9 H 0.411 0.589 10 C 0.555 3.445 11 O -0.553 6.553 12 C -0.544 4.544 13 H 0.071 0.929 14 C 0.087 3.913 15 N -0.764 5.764 16 Si 0.905 3.095 17 H -0.265 1.265 18 H -0.277 1.277 19 H -0.276 1.276 20 H 0.035 0.965 21 H 0.033 0.967 22 H 0.073 0.927 23 H 0.068 0.932 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.169 0.831 27 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.200 9.963 -2.814 12.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.042 4.042 2 N -0.382 5.382 3 C 0.079 3.921 4 C -0.057 4.057 5 N -0.179 5.179 6 C -0.180 4.180 7 C -0.210 4.210 8 N -0.175 5.175 9 H 0.248 0.752 10 C 0.360 3.640 11 O -0.433 6.433 12 C -0.580 4.580 13 H 0.089 0.911 14 C -0.133 4.133 15 N -0.393 5.393 16 Si 0.730 3.270 17 H -0.189 1.189 18 H -0.202 1.202 19 H -0.202 1.202 20 H 0.054 0.946 21 H 0.051 0.949 22 H 0.091 0.909 23 H 0.087 0.913 24 H 0.123 0.877 25 H 0.180 0.820 26 H 0.186 0.814 27 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -5.659 9.265 -2.582 11.159 hybrid contribution -1.683 0.050 -0.459 1.745 sum -7.343 9.315 -3.041 12.245 Atomic orbital electron populations 1.21399 0.82278 1.00828 0.99667 1.48209 1.04942 1.04781 1.80279 1.19341 0.99722 0.87178 0.85846 1.24473 0.89570 0.93366 0.98264 1.70465 1.22179 1.22563 1.02743 1.22411 0.98878 0.99672 0.97057 1.22584 0.99888 1.08878 0.89655 1.43418 1.23919 1.37739 1.12469 0.75218 1.18308 0.87204 0.81977 0.76495 1.90650 1.13630 1.85609 1.53421 1.20995 0.93553 0.89186 1.54296 0.91121 1.25720 0.94596 1.00208 0.92742 1.70034 1.06987 1.27103 1.35140 0.86357 0.80431 0.82008 0.78197 1.18856 1.20215 1.20164 0.94610 0.94868 0.90863 0.91323 0.87731 0.81991 0.81365 0.92168 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.85 10.15 59.85 0.61 2.46 15 2 N -0.64 -14.68 2.86 -184.63 -0.53 -15.21 15 3 C 0.21 4.06 6.03 -5.19 -0.03 4.03 15 4 C 0.21 4.12 7.73 -155.41 -1.20 2.92 15 5 N -0.46 -10.51 11.25 -10.82 -0.12 -10.63 15 6 C -0.03 -0.56 11.87 -17.81 -0.21 -0.77 15 7 C -0.08 -1.10 12.04 -16.56 -0.20 -1.30 15 8 N -0.57 -8.45 6.15 -10.22 -0.06 -8.51 15 9 H 0.41 4.40 8.96 -40.82 -0.37 4.03 15 10 C 0.55 16.10 7.61 -12.99 -0.10 16.00 15 11 O -0.55 -18.30 14.60 5.20 0.08 -18.23 15 12 C -0.54 -15.53 8.74 -35.64 -0.31 -15.84 15 13 H 0.07 1.84 6.00 -52.49 -0.31 1.52 15 14 C 0.09 2.47 5.50 -17.37 -0.10 2.38 15 15 N -0.76 -23.42 11.83 55.55 0.66 -22.77 15 16 Si 0.91 20.43 29.56 -169.99 -5.02 15.41 15 17 H -0.26 -5.72 7.11 56.52 0.40 -5.32 15 18 H -0.28 -6.17 7.11 56.52 0.40 -5.77 15 19 H -0.28 -6.09 7.11 56.52 0.40 -5.69 15 20 H 0.04 0.59 8.14 -51.93 -0.42 0.16 15 21 H 0.03 0.48 8.07 -51.93 -0.42 0.06 15 22 H 0.07 1.41 6.09 -51.93 -0.32 1.10 15 23 H 0.07 1.01 8.07 -51.93 -0.42 0.59 15 24 H 0.10 2.32 7.42 -51.92 -0.39 1.94 15 25 H 0.16 2.50 8.06 -52.49 -0.42 2.08 15 26 H 0.17 1.69 8.06 -52.49 -0.42 1.26 15 27 H 0.27 7.43 8.29 -40.82 -0.34 7.10 15 LS Contribution 244.40 15.07 3.68 3.68 Total: -1.00 -37.81 244.40 -5.49 -43.30 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -2.62 Total: 3.08 kcal Atomic # 6 Polarization: 11.42 SS G_CDS: -1.54 Total: 9.88 kcal Atomic # 7 Polarization: -57.06 SS G_CDS: -0.06 Total: -57.12 kcal Atomic # 8 Polarization: -18.30 SS G_CDS: 0.08 Total: -18.23 kcal Atomic # 14 Polarization: 20.43 SS G_CDS: -5.02 Total: 15.41 kcal Total LS contribution 3.68 Total: 3.68 kcal Total: -37.81 -5.49 -43.30 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000080531178.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.951 kcal (2) G-P(sol) polarization free energy of solvation -37.812 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.298 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.653 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds