Wall clock time and date at job start Sun Mar 29 2020 21:26:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39650 * 126.05941 * 2 1 4 4 C 1.38517 * 105.34838 * 179.84659 * 3 2 1 5 5 C 1.47018 * 126.89578 * 180.10293 * 4 3 2 6 6 O 1.21676 * 120.00225 * 185.67705 * 5 4 3 7 7 N 1.34771 * 119.99981 * 5.67015 * 5 4 3 8 8 C 1.36837 * 120.00471 * 185.19960 * 7 5 4 9 9 H 1.08003 * 119.99826 * 0.02562 * 8 7 5 10 10 C 1.39058 * 120.00646 * 180.02562 * 8 7 5 11 11 N 1.31359 * 120.00036 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99462 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47270 * 90.00119 * 12 10 8 14 14 H 1.48508 * 109.46540 * 210.00016 * 12 10 8 15 15 H 1.48504 * 109.47265 * 329.99478 * 12 10 8 16 16 N 1.36650 * 106.20651 * 0.40425 * 4 3 2 17 17 C 1.46507 * 125.19204 * 179.73771 * 16 4 3 18 18 N 1.28433 * 109.61397 * 359.73120 * 16 4 3 19 19 H 1.08994 * 109.47121 * 269.71443 * 1 2 3 20 20 H 1.08995 * 109.46830 * 149.71534 * 1 2 3 21 21 H 1.09001 * 109.46746 * 29.72181 * 1 2 3 22 22 H 1.07999 * 127.32102 * 359.97438 * 3 2 1 23 23 H 0.96998 * 120.00451 * 5.19885 * 7 5 4 24 24 H 0.97000 * 119.99792 * 180.02562 * 11 10 8 25 25 H 1.08999 * 109.46701 * 266.07128 * 17 16 4 26 26 H 1.08999 * 109.47039 * 26.06905 * 17 16 4 27 27 H 1.08997 * 109.47209 * 146.06894 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3291 1.1289 0.0000 4 6 3.6247 0.6391 0.0036 5 6 4.8661 1.4267 0.0071 6 8 5.9419 0.8673 -0.0941 7 7 4.8126 2.7684 0.1224 8 6 5.9577 3.5103 0.0191 9 1 6.9044 3.0207 -0.1553 10 6 5.9025 4.8947 0.1386 11 7 7.0018 5.6068 0.0389 12 14 4.2652 5.7414 0.4409 13 1 4.0288 5.8544 1.9026 14 1 4.2906 7.0980 -0.1628 15 1 3.1745 4.9451 -0.1769 16 7 3.5174 -0.7232 -0.0038 17 6 4.6447 -1.6589 -0.0087 18 7 2.2775 -1.0580 -0.0056 19 1 -0.3633 -0.0051 1.0276 20 1 -0.3633 -0.8874 -0.5182 21 1 -0.3633 0.8925 -0.5095 22 1 2.0202 2.1638 -0.0004 23 1 3.9623 3.2083 0.2787 24 1 6.9634 6.5724 0.1226 25 1 4.8794 -1.9396 -1.0355 26 1 5.5138 -1.1831 0.4456 27 1 4.3797 -2.5501 0.5601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000082303838.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:30 Heat of formation + Delta-G solvation = 38.886357 kcal Electronic energy + Delta-G solvation = -13401.721272 eV Core-core repulsion = 10968.458537 eV Total energy + Delta-G solvation = -2433.262735 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -42.03201 -38.16184 -34.41845 -33.48201 -31.96563 -30.34618 -29.38622 -25.44870 -25.03536 -22.16486 -20.37110 -19.28633 -18.17040 -16.59583 -15.86750 -15.55207 -14.91479 -13.94237 -13.53436 -13.36529 -13.26884 -13.02013 -12.88175 -12.39676 -12.21680 -11.99555 -11.81849 -11.32074 -10.69468 -10.30271 -10.13942 -9.77810 -8.82331 -8.60902 -8.48609 -8.35858 -6.51270 -3.97569 1.87353 2.89718 2.90442 2.98129 3.01806 3.08048 3.96409 4.04100 4.44028 4.82769 5.13878 5.23014 5.42304 5.50882 5.57501 5.75007 5.81812 5.90837 5.97311 6.05664 6.29686 6.90515 7.19187 7.36823 7.93565 8.35573 8.52056 8.73930 9.21409 9.61070 10.59964 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.009975 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.668356 B = 2806.324181 C = 3527.068742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.019 3.981 3 C -0.223 4.223 4 C 0.009 3.991 5 C 0.502 3.498 6 O -0.583 6.583 7 N -0.554 5.554 8 C -0.303 4.303 9 H 0.125 0.875 10 C 0.047 3.953 11 N -0.864 5.864 12 Si 0.878 3.122 13 H -0.266 1.266 14 H -0.272 1.272 15 H -0.265 1.265 16 N -0.268 5.268 17 C 0.091 3.909 18 N -0.300 5.300 19 H 0.069 0.931 20 H 0.067 0.933 21 H 0.072 0.928 22 H 0.152 0.848 23 H 0.376 0.624 24 H 0.278 0.722 25 H 0.078 0.922 26 H 0.115 0.885 27 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.999 -6.798 0.707 12.950 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.138 4.138 3 C -0.252 4.252 4 C -0.120 4.120 5 C 0.288 3.712 6 O -0.469 6.469 7 N -0.190 5.190 8 C -0.433 4.433 9 H 0.143 0.857 10 C -0.159 4.159 11 N -0.502 5.502 12 Si 0.703 3.297 13 H -0.191 1.191 14 H -0.197 1.197 15 H -0.190 1.190 16 N -0.054 5.054 17 C -0.050 4.050 18 N -0.133 5.133 19 H 0.087 0.913 20 H 0.085 0.915 21 H 0.091 0.909 22 H 0.170 0.830 23 H 0.210 0.790 24 H 0.089 0.911 25 H 0.096 0.904 26 H 0.133 0.867 27 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -10.042 -8.218 0.617 12.991 hybrid contribution -1.073 1.706 0.175 2.023 sum -11.115 -6.512 0.793 12.906 Atomic orbital electron populations 1.20009 0.87045 1.02664 1.02270 1.21848 0.96661 0.89147 1.06176 1.22007 0.90786 0.99802 1.12626 1.21887 0.96423 0.84953 1.08766 1.16293 0.86043 0.82277 0.86559 1.90627 1.29425 1.69992 1.56864 1.41901 1.09943 1.05065 1.62103 1.19498 0.88197 0.89028 1.46527 0.85740 1.25106 0.97804 0.96032 0.96911 1.69590 1.27011 1.07239 1.46316 0.86676 0.83027 0.80381 0.79616 1.19116 1.19687 1.18989 1.45389 1.04707 1.04626 1.50685 1.22266 0.86465 0.92155 1.04084 1.72982 0.89768 1.27916 1.22649 0.91260 0.91450 0.90890 0.83047 0.79014 0.91096 0.90369 0.86661 0.89868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.72 10.45 36.01 0.38 -0.34 15 2 C 0.02 0.31 7.22 -82.47 -0.60 -0.28 15 3 C -0.22 -4.00 10.44 -38.95 -0.41 -4.41 15 4 C 0.01 0.19 6.96 -82.06 -0.57 -0.38 15 5 C 0.50 11.99 7.73 -12.70 -0.10 11.89 15 6 O -0.58 -15.40 14.26 5.21 0.07 -15.32 15 7 N -0.55 -13.38 5.06 -12.08 -0.06 -13.44 15 8 C -0.30 -8.36 10.16 -15.01 -0.15 -8.51 15 9 H 0.13 3.87 7.39 -52.48 -0.39 3.48 15 10 C 0.05 1.25 5.50 -17.45 -0.10 1.15 15 11 N -0.86 -24.16 13.95 55.50 0.77 -23.39 15 12 Si 0.88 18.68 27.74 -169.99 -4.71 13.97 15 13 H -0.27 -5.55 7.11 56.52 0.40 -5.15 15 14 H -0.27 -5.74 7.11 56.52 0.40 -5.34 15 15 H -0.26 -5.16 6.52 56.52 0.37 -4.79 15 16 N -0.27 -5.05 3.75 -63.88 -0.24 -5.29 15 17 C 0.09 1.40 10.88 59.85 0.65 2.05 15 18 N -0.30 -5.42 11.90 33.64 0.40 -5.02 15 19 H 0.07 0.71 8.14 -51.93 -0.42 0.29 15 20 H 0.07 0.72 8.14 -51.93 -0.42 0.30 15 21 H 0.07 0.73 8.14 -51.93 -0.42 0.30 15 22 H 0.15 2.39 7.63 -52.49 -0.40 1.98 15 23 H 0.38 8.08 4.84 -40.82 -0.20 7.88 15 24 H 0.28 7.14 8.31 -40.82 -0.34 6.80 15 25 H 0.08 1.11 8.14 -51.93 -0.42 0.68 15 26 H 0.12 1.97 6.21 -51.93 -0.32 1.65 15 27 H 0.08 1.04 8.14 -51.93 -0.42 0.61 15 LS Contribution 241.82 15.07 3.64 3.64 Total: -1.00 -31.37 241.82 -3.60 -34.97 By element: Atomic # 1 Polarization: 11.30 SS G_CDS: -2.59 Total: 8.71 kcal Atomic # 6 Polarization: 2.07 SS G_CDS: -0.89 Total: 1.17 kcal Atomic # 7 Polarization: -48.02 SS G_CDS: 0.87 Total: -47.14 kcal Atomic # 8 Polarization: -15.40 SS G_CDS: 0.07 Total: -15.32 kcal Atomic # 14 Polarization: 18.68 SS G_CDS: -4.71 Total: 13.97 kcal Total LS contribution 3.64 Total: 3.64 kcal Total: -31.37 -3.60 -34.97 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303838.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.858 kcal (2) G-P(sol) polarization free energy of solvation -31.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.490 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.971 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds