Wall clock time and date at job start Sun Mar 29 2020 21:26:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39650 * 126.05941 * 2 1 4 4 C 1.38517 * 105.34838 * 179.84659 * 3 2 1 5 5 C 1.47018 * 126.89578 * 180.10293 * 4 3 2 6 6 O 1.21676 * 120.00225 * 185.67705 * 5 4 3 7 7 N 1.34771 * 119.99981 * 5.67015 * 5 4 3 8 8 C 1.36837 * 120.00471 * 185.19960 * 7 5 4 9 9 H 1.08003 * 119.99826 * 0.02562 * 8 7 5 10 10 C 1.39058 * 120.00646 * 180.02562 * 8 7 5 11 11 N 1.31359 * 120.00036 * 180.02562 * 10 8 7 12 12 Si 1.86798 * 119.99462 * 0.02562 * 10 8 7 13 13 H 1.48499 * 109.47270 * 90.00119 * 12 10 8 14 14 H 1.48508 * 109.46540 * 210.00016 * 12 10 8 15 15 H 1.48504 * 109.47265 * 329.99478 * 12 10 8 16 16 N 1.36650 * 106.20651 * 0.40425 * 4 3 2 17 17 C 1.46507 * 125.19204 * 179.73771 * 16 4 3 18 18 N 1.28433 * 109.61397 * 359.73120 * 16 4 3 19 19 H 1.08994 * 109.47121 * 269.71443 * 1 2 3 20 20 H 1.08995 * 109.46830 * 149.71534 * 1 2 3 21 21 H 1.09001 * 109.46746 * 29.72181 * 1 2 3 22 22 H 1.07999 * 127.32102 * 359.97438 * 3 2 1 23 23 H 0.96998 * 120.00451 * 5.19885 * 7 5 4 24 24 H 0.97000 * 119.99792 * 180.02562 * 11 10 8 25 25 H 1.08999 * 109.46701 * 266.07128 * 17 16 4 26 26 H 1.08999 * 109.47039 * 26.06905 * 17 16 4 27 27 H 1.08997 * 109.47209 * 146.06894 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3291 1.1289 0.0000 4 6 3.6247 0.6391 0.0036 5 6 4.8661 1.4267 0.0071 6 8 5.9419 0.8673 -0.0941 7 7 4.8126 2.7684 0.1224 8 6 5.9577 3.5103 0.0191 9 1 6.9044 3.0207 -0.1553 10 6 5.9025 4.8947 0.1386 11 7 7.0018 5.6068 0.0389 12 14 4.2652 5.7414 0.4409 13 1 4.0288 5.8544 1.9026 14 1 4.2906 7.0980 -0.1628 15 1 3.1745 4.9451 -0.1769 16 7 3.5174 -0.7232 -0.0038 17 6 4.6447 -1.6589 -0.0087 18 7 2.2775 -1.0580 -0.0056 19 1 -0.3633 -0.0051 1.0276 20 1 -0.3633 -0.8874 -0.5182 21 1 -0.3633 0.8925 -0.5095 22 1 2.0202 2.1638 -0.0004 23 1 3.9623 3.2083 0.2787 24 1 6.9634 6.5724 0.1226 25 1 4.8794 -1.9396 -1.0355 26 1 5.5138 -1.1831 0.4456 27 1 4.3797 -2.5501 0.5601 RHF calculation, no. of doubly occupied orbitals= 38 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000082303838.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:26:29 Heat of formation + Delta-G solvation = 15.690723 kcal Electronic energy + Delta-G solvation = -13402.727110 eV Core-core repulsion = 10968.458537 eV Total energy + Delta-G solvation = -2434.268573 eV No. of doubly occupied orbitals = 38 Molecular weight (most abundant/longest-lived isotopes) = 209.090 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -43.44851 -40.08307 -36.31456 -34.88048 -33.93914 -31.89273 -30.49052 -27.32032 -26.33528 -23.82917 -21.87789 -21.21132 -19.76348 -18.29451 -17.32034 -17.26700 -16.60390 -15.59691 -15.38917 -14.96911 -14.69641 -14.32487 -14.28718 -14.05293 -13.22821 -13.14969 -13.11759 -13.01368 -12.49293 -12.01526 -11.65427 -11.64261 -10.75952 -10.40629 -10.08555 -9.79050 -8.51868 -6.10719 0.30951 1.30112 1.36744 1.42637 1.53877 1.60535 2.17591 2.23638 2.72144 3.12448 3.56803 3.80385 4.15181 4.29915 4.33653 4.48174 4.67085 4.72148 4.94820 5.06370 5.16798 5.40333 5.61875 5.80860 5.84984 6.42013 6.69196 7.09212 7.22148 7.70317 8.63821 Molecular weight = 209.09amu Principal moments of inertia in cm(-1) A = 0.037441 B = 0.009975 C = 0.007937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.668356 B = 2806.324181 C = 3527.068742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.020 3.980 3 C -0.207 4.207 4 C -0.030 4.030 5 C 0.508 3.492 6 O -0.618 6.618 7 N -0.554 5.554 8 C -0.332 4.332 9 H 0.066 0.934 10 C -0.002 4.002 11 N -0.914 5.914 12 Si 0.954 3.046 13 H -0.254 1.254 14 H -0.266 1.266 15 H -0.230 1.230 16 N -0.273 5.273 17 C 0.086 3.914 18 N -0.303 5.303 19 H 0.087 0.913 20 H 0.077 0.923 21 H 0.095 0.905 22 H 0.177 0.823 23 H 0.392 0.608 24 H 0.285 0.715 25 H 0.088 0.912 26 H 0.092 0.908 27 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.941 -6.821 0.984 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.137 4.137 3 C -0.236 4.236 4 C -0.159 4.159 5 C 0.296 3.704 6 O -0.505 6.505 7 N -0.192 5.192 8 C -0.461 4.461 9 H 0.085 0.915 10 C -0.204 4.204 11 N -0.553 5.553 12 Si 0.773 3.227 13 H -0.178 1.178 14 H -0.191 1.191 15 H -0.153 1.153 16 N -0.060 5.060 17 C -0.053 4.053 18 N -0.136 5.136 19 H 0.106 0.894 20 H 0.096 0.904 21 H 0.114 0.886 22 H 0.195 0.805 23 H 0.228 0.772 24 H 0.095 0.905 25 H 0.107 0.893 26 H 0.111 0.889 27 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.986 -8.258 0.892 16.267 hybrid contribution 0.167 1.536 0.075 1.547 sum -13.819 -6.722 0.967 15.398 Atomic orbital electron populations 1.20221 0.83337 1.04340 1.03960 1.22654 0.98795 0.87939 1.04322 1.22430 0.89607 1.01531 1.10054 1.21516 0.95776 0.85918 1.12646 1.16865 0.86918 0.82376 0.84271 1.90605 1.31482 1.70826 1.57612 1.41625 1.09514 1.04988 1.63075 1.19056 0.87589 0.90053 1.49450 0.91549 1.26098 1.02804 0.95996 0.95453 1.69737 1.30177 1.07987 1.47393 0.85510 0.77675 0.79159 0.80323 1.17778 1.19078 1.15344 1.45683 1.05565 1.04317 1.50452 1.22387 0.85262 0.92517 1.05157 1.73028 0.89483 1.28660 1.22468 0.89433 0.90449 0.88635 0.80540 0.77151 0.90487 0.89302 0.88935 0.86678 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.10 10.45 71.24 0.74 -0.36 15 2 C 0.02 0.58 7.22 43.04 0.31 0.89 15 3 C -0.21 -6.72 10.44 22.68 0.24 -6.48 15 4 C -0.03 -1.18 6.96 40.76 0.28 -0.90 15 5 C 0.51 24.68 7.73 86.55 0.67 25.35 15 6 O -0.62 -34.20 14.26 -4.27 -0.06 -34.26 15 7 N -0.55 -26.89 5.06 -310.35 -1.57 -28.46 15 8 C -0.33 -19.12 10.16 84.11 0.85 -18.26 15 9 H 0.07 4.48 7.39 -2.91 -0.02 4.46 15 10 C 0.00 -0.10 5.50 84.96 0.47 0.37 15 11 N -0.91 -52.90 13.95 21.68 0.30 -52.60 15 12 Si 0.95 37.23 27.74 68.60 1.90 39.13 15 13 H -0.25 -9.40 7.11 99.48 0.71 -8.70 15 14 H -0.27 -10.13 7.11 99.48 0.71 -9.42 15 15 H -0.23 -7.62 6.52 99.48 0.65 -6.97 15 16 N -0.27 -9.91 3.75 -356.02 -1.34 -11.25 15 17 C 0.09 2.63 10.88 127.77 1.39 4.02 15 18 N -0.30 -10.08 11.90 -47.50 -0.57 -10.65 15 19 H 0.09 1.34 8.14 -2.39 -0.02 1.32 15 20 H 0.08 1.30 8.14 -2.39 -0.02 1.28 15 21 H 0.09 1.36 8.14 -2.39 -0.02 1.34 15 22 H 0.18 4.70 7.63 -2.91 -0.02 4.68 15 23 H 0.39 16.06 4.84 -92.71 -0.45 15.61 15 24 H 0.29 14.95 8.31 -92.71 -0.77 14.18 15 25 H 0.09 2.47 8.14 -2.39 -0.02 2.45 15 26 H 0.09 3.26 6.21 -2.39 -0.01 3.25 15 27 H 0.11 2.69 8.14 -2.39 -0.02 2.67 15 Total: -1.00 -71.63 241.82 4.32 -67.31 By element: Atomic # 1 Polarization: 25.46 SS G_CDS: 0.69 Total: 26.15 kcal Atomic # 6 Polarization: -0.33 SS G_CDS: 4.96 Total: 4.63 kcal Atomic # 7 Polarization: -99.78 SS G_CDS: -3.17 Total: -102.95 kcal Atomic # 8 Polarization: -34.20 SS G_CDS: -0.06 Total: -34.26 kcal Atomic # 14 Polarization: 37.23 SS G_CDS: 1.90 Total: 39.13 kcal Total: -71.63 4.32 -67.31 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000082303838.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.002 kcal (2) G-P(sol) polarization free energy of solvation -71.629 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.311 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds