Wall clock time and date at job start Sun Mar 29 2020 22:01:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86801 * 119.99774 * 2 1 4 4 H 1.48504 * 109.47209 * 269.99978 * 3 2 1 5 5 H 1.48506 * 109.47294 * 29.99826 * 3 2 1 6 6 H 1.48501 * 109.47275 * 149.99729 * 3 2 1 7 7 C 1.37871 * 120.00481 * 179.97438 * 2 1 3 8 8 H 1.08000 * 120.00205 * 359.72747 * 7 2 1 9 9 C 1.50706 * 120.00436 * 180.02562 * 7 2 1 10 10 N 1.46895 * 109.47182 * 179.72677 * 9 7 2 11 11 C 1.46901 * 110.99816 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.47209 * 179.97438 * 11 10 9 13 13 C 1.53003 * 109.47302 * 175.00315 * 12 11 10 14 14 C 1.52995 * 117.49500 * 248.74740 * 13 12 11 15 15 C 1.52998 * 117.49787 * 180.08984 * 13 12 11 16 16 C 1.52999 * 109.47201 * 295.00290 * 12 11 10 17 17 C 1.53000 * 117.50261 * 128.74311 * 16 12 11 18 18 C 1.53005 * 117.49841 * 60.08427 * 16 12 11 19 19 H 0.96995 * 120.00207 * 0.02562 * 1 2 3 20 20 H 1.09001 * 109.46564 * 299.72974 * 9 7 2 21 21 H 1.08998 * 109.47012 * 59.72028 * 9 7 2 22 22 H 1.00902 * 111.00178 * 56.04567 * 10 9 7 23 23 H 1.08998 * 109.47247 * 300.00237 * 11 10 9 24 24 H 1.09009 * 109.47056 * 60.00110 * 11 10 9 25 25 H 1.08998 * 109.46845 * 54.99935 * 12 11 10 26 26 H 1.09000 * 115.54643 * 34.41286 * 13 12 11 27 27 H 1.08994 * 117.50536 * 0.02562 * 14 13 12 28 28 H 1.09011 * 117.49691 * 145.01833 * 14 13 12 29 29 H 1.09000 * 117.49207 * 214.97682 * 15 13 12 30 30 H 1.08994 * 117.50181 * 359.97272 * 15 13 12 31 31 H 1.09004 * 115.55446 * 274.41676 * 16 12 11 32 32 H 1.09001 * 117.49595 * 0.02562 * 17 16 12 33 33 H 1.08998 * 117.50020 * 145.01703 * 17 16 12 34 34 H 1.09001 * 117.49803 * 214.98034 * 18 16 12 35 35 H 1.09000 * 117.49939 * 359.97438 * 18 16 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1939 0.0005 8 1 1.4647 -2.1293 0.0054 9 6 3.5117 -1.1939 0.0011 10 7 4.0013 -2.5788 0.0082 11 6 5.4698 -2.6180 0.0084 12 6 5.9413 -4.0735 0.0165 13 6 7.4655 -4.1167 -0.1090 14 6 8.0518 -4.6691 -1.4097 15 6 8.1346 -5.4926 -0.1221 16 6 5.5184 -4.7393 1.3275 17 6 4.7711 -6.0711 1.2348 18 6 4.0216 -4.7991 1.6389 19 1 -0.4850 0.8400 -0.0004 20 1 3.8752 -0.6845 -0.8913 21 1 3.8746 -0.6756 0.8886 22 1 3.6261 -3.0991 -0.7707 23 1 5.8467 -2.1185 -0.8842 24 1 5.8468 -2.1094 0.8958 25 1 5.4924 -4.6054 -0.8223 26 1 8.0005 -3.3014 0.3780 27 1 7.3518 -5.0013 -2.1762 28 1 8.9729 -4.2174 -1.7783 29 1 9.1100 -5.5823 0.3560 30 1 7.4890 -6.3670 -0.0408 31 1 6.2017 -4.6030 2.1658 32 1 4.5810 -6.4732 0.2396 33 1 4.9626 -6.8109 2.0120 34 1 3.7202 -4.7025 2.6819 35 1 3.3381 -4.3638 0.9099 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000083894977.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:01:17 Heat of formation + Delta-G solvation = 42.693102 kcal Electronic energy + Delta-G solvation = -13767.052476 eV Core-core repulsion = 11573.328252 eV Total energy + Delta-G solvation = -2193.724224 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.79212 -36.01738 -34.89905 -32.39922 -29.89849 -26.67291 -22.91494 -22.20300 -21.83997 -21.23092 -20.93323 -19.42838 -16.76985 -15.76025 -15.19554 -14.96651 -14.30218 -13.98802 -13.48333 -13.20697 -12.78984 -12.31239 -11.96868 -11.57803 -11.46312 -11.14975 -11.00549 -10.88278 -10.67349 -10.50141 -10.19282 -9.98089 -9.78776 -9.53312 -9.38172 -9.20927 -8.58003 -7.34502 -6.04609 -4.02185 3.29263 3.36887 3.40080 3.83403 4.30108 4.43360 4.60557 4.90449 4.98639 5.19731 5.28626 5.31804 5.42289 5.48654 5.62732 5.63461 5.74702 5.83093 5.92596 6.00695 6.01283 6.12676 6.24311 6.28129 6.45655 6.57024 6.66783 6.81236 7.00894 7.11578 7.64200 7.92367 8.34985 8.66910 9.03386 9.57842 11.08716 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.040963 B = 0.007179 C = 0.006402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.380709 B = 3899.553158 C = 4372.564857 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.068 3.932 3 Si 0.878 3.122 4 H -0.278 1.278 5 H -0.286 1.286 6 H -0.267 1.267 7 C -0.514 4.514 8 H 0.079 0.921 9 C 0.163 3.837 10 N -0.672 5.672 11 C 0.066 3.934 12 C -0.023 4.023 13 C -0.140 4.140 14 C -0.184 4.184 15 C -0.176 4.176 16 C -0.136 4.136 17 C -0.200 4.200 18 C -0.151 4.151 19 H 0.263 0.737 20 H -0.022 1.022 21 H 0.026 0.974 22 H 0.331 0.669 23 H 0.019 0.981 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.101 0.899 27 H 0.092 0.908 28 H 0.089 0.911 29 H 0.088 0.912 30 H 0.094 0.906 31 H 0.092 0.908 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.081 0.919 35 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.451 -9.026 -0.106 17.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.134 4.134 3 Si 0.705 3.295 4 H -0.204 1.204 5 H -0.212 1.212 6 H -0.192 1.192 7 C -0.552 4.552 8 H 0.097 0.903 9 C 0.035 3.965 10 N -0.302 5.302 11 C -0.064 4.064 12 C -0.042 4.042 13 C -0.159 4.159 14 C -0.221 4.221 15 C -0.213 4.213 16 C -0.154 4.154 17 C -0.237 4.237 18 C -0.188 4.188 19 H 0.073 0.927 20 H -0.005 1.005 21 H 0.044 0.956 22 H 0.148 0.852 23 H 0.037 0.963 24 H 0.083 0.917 25 H 0.085 0.915 26 H 0.119 0.881 27 H 0.110 0.890 28 H 0.107 0.893 29 H 0.106 0.894 30 H 0.113 0.887 31 H 0.110 0.890 32 H 0.102 0.898 33 H 0.099 0.901 34 H 0.099 0.901 35 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 14.234 -8.950 0.586 16.824 hybrid contribution 0.678 1.242 -0.859 1.656 sum 14.912 -7.708 -0.273 16.789 Atomic orbital electron populations 1.69898 1.06151 1.26835 1.51141 1.24903 0.94732 0.98934 0.94791 0.86826 0.80349 0.83927 0.78388 1.20431 1.21205 1.19186 1.21069 0.88984 0.94753 1.50398 0.90292 1.20013 0.96551 0.85288 0.94659 1.60626 1.04638 1.16048 1.48857 1.21903 0.90467 0.94446 0.99591 1.20351 0.91349 0.96299 0.96224 1.22277 0.95519 0.97120 1.00970 1.23007 1.02792 1.04779 0.91524 1.22878 1.01813 0.95359 1.01256 1.21954 0.96068 0.99194 0.98195 1.23014 1.07394 0.91407 1.01881 1.23188 0.94881 0.97873 1.02860 0.92694 1.00470 0.95618 0.85163 0.96332 0.91715 0.91501 0.88080 0.88990 0.89265 0.89364 0.88704 0.89000 0.89755 0.90124 0.90085 0.85435 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.79 13.96 55.43 0.77 -27.02 16 2 C 0.07 1.98 5.47 -17.82 -0.10 1.89 16 3 Si 0.88 21.79 27.47 -169.99 -4.67 17.12 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 5 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 6 H -0.27 -6.43 6.53 56.52 0.37 -6.06 16 7 C -0.51 -14.65 9.87 -34.44 -0.34 -14.99 16 8 H 0.08 2.42 8.06 -52.49 -0.42 2.00 16 9 C 0.16 3.95 4.51 -4.98 -0.02 3.93 16 10 N -0.67 -13.52 3.61 -115.05 -0.42 -13.93 16 11 C 0.07 1.11 5.05 -3.82 -0.02 1.09 16 12 C -0.02 -0.33 2.38 -90.62 -0.22 -0.54 16 13 C -0.14 -1.68 5.13 -90.62 -0.46 -2.15 16 14 C -0.18 -1.97 10.18 -26.70 -0.27 -2.24 16 15 C -0.18 -1.84 9.88 -26.70 -0.26 -2.11 16 16 C -0.14 -1.92 4.81 -90.62 -0.44 -2.36 16 17 C -0.20 -2.66 10.18 -26.69 -0.27 -2.93 16 18 C -0.15 -2.40 9.37 -26.69 -0.25 -2.65 16 19 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 20 H -0.02 -0.54 7.58 -51.93 -0.39 -0.94 16 21 H 0.03 0.65 7.18 -51.93 -0.37 0.27 16 22 H 0.33 6.51 8.50 -39.29 -0.33 6.17 16 23 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 24 H 0.06 1.12 8.14 -51.92 -0.42 0.69 16 25 H 0.07 0.95 7.66 -51.93 -0.40 0.55 16 26 H 0.10 1.20 8.11 -51.93 -0.42 0.77 16 27 H 0.09 0.99 8.05 -51.93 -0.42 0.57 16 28 H 0.09 0.86 8.14 -51.92 -0.42 0.44 16 29 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.09 1.27 8.11 -51.93 -0.42 0.85 16 32 H 0.08 1.09 8.05 -51.93 -0.42 0.67 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 35 H 0.13 2.32 5.91 -51.93 -0.31 2.01 16 LS Contribution 285.13 15.07 4.30 4.30 Total: -1.00 -29.36 285.13 -8.70 -38.06 By element: Atomic # 1 Polarization: 10.57 SS G_CDS: -6.03 Total: 4.53 kcal Atomic # 6 Polarization: -20.41 SS G_CDS: -2.65 Total: -23.06 kcal Atomic # 7 Polarization: -41.31 SS G_CDS: 0.36 Total: -40.95 kcal Atomic # 14 Polarization: 21.79 SS G_CDS: -4.67 Total: 17.12 kcal Total LS contribution 4.30 Total: 4.30 kcal Total: -29.36 -8.70 -38.06 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083894977.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.755 kcal (2) G-P(sol) polarization free energy of solvation -29.362 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.393 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.700 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.062 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds