Wall clock time and date at job start Sun Mar 29 2020 21:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50706 * 109.47213 * 2 1 4 4 N 1.33242 * 125.52317 * 89.99815 * 3 2 1 5 5 C 1.30826 * 109.83182 * 179.97438 * 4 3 2 6 6 C 1.50702 * 125.96958 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46761 * 270.04486 * 6 5 4 8 8 N 1.34439 * 108.07203 * 0.02562 * 5 4 3 9 9 C 1.46506 * 126.81847 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.46892 * 90.00075 * 9 8 5 11 11 H 1.08002 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 N 1.30708 * 125.53107 * 270.28754 * 3 2 1 19 19 H 1.08995 * 109.47504 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46985 * 299.99795 * 1 2 3 21 21 H 1.09004 * 109.47665 * 59.99474 * 1 2 3 22 22 H 1.08996 * 109.47255 * 240.00233 * 2 1 3 23 23 H 1.09000 * 109.47548 * 119.99772 * 2 1 3 24 24 H 1.09001 * 109.46504 * 30.04208 * 6 5 4 25 25 H 1.08999 * 109.47384 * 150.04214 * 6 5 4 26 26 H 1.08999 * 109.47394 * 59.99734 * 7 6 5 27 27 H 1.09002 * 109.46677 * 179.97438 * 7 6 5 28 28 H 1.08993 * 109.47101 * 299.99328 * 7 6 5 29 29 H 1.08992 * 109.47369 * 330.00157 * 9 8 5 30 30 H 1.09005 * 109.46360 * 209.99772 * 9 8 5 31 31 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2903 2.1508 1.0844 5 6 2.7107 3.3381 0.7306 6 6 3.1044 4.4526 1.6654 7 6 1.8774 5.3103 1.9816 8 7 2.7292 3.3908 -0.6126 9 6 3.1319 4.5300 -1.4411 10 6 4.6095 4.4468 -1.7254 11 1 5.1906 3.6277 -1.3283 12 6 5.2196 5.4167 -2.4925 13 7 6.5080 5.3411 -2.7450 14 14 4.2144 6.8331 -3.1799 15 1 4.2115 7.9556 -2.2077 16 1 4.8124 7.2888 -4.4605 17 1 2.8201 6.3810 -3.4180 18 7 2.2805 2.1388 -1.0637 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.4997 4.0295 2.5889 25 1 3.8678 5.0707 1.1929 26 1 1.1140 4.6922 2.4541 27 1 2.1621 6.1161 2.6581 28 1 1.4821 5.7333 1.0581 29 1 2.9153 5.4582 -0.9126 30 1 2.5794 4.5092 -2.3806 31 1 6.9365 6.0213 -3.2879 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084065795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:48 Heat of formation + Delta-G solvation = 62.773072 kcal Electronic energy + Delta-G solvation = -13691.481552 eV Core-core repulsion = 11395.087717 eV Total energy + Delta-G solvation = -2296.393835 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.37264 -34.95764 -33.48904 -32.83775 -31.73728 -29.44656 -27.69098 -24.07941 -23.94470 -22.14049 -19.70210 -19.48865 -17.21591 -15.96610 -15.05477 -14.58897 -14.40055 -13.93911 -13.67349 -13.50856 -12.71303 -12.46767 -12.32050 -12.16820 -11.63144 -11.38437 -11.29236 -11.10128 -10.91275 -10.77512 -10.55978 -10.38290 -9.81746 -9.24157 -8.85925 -8.83379 -8.47571 -6.33667 -4.38317 2.44204 3.08513 3.15389 3.18103 3.31004 3.53079 4.15013 4.53651 4.92453 5.08242 5.22189 5.38038 5.50957 5.55527 5.67492 5.71503 5.91433 6.01198 6.09177 6.14587 6.23669 6.32480 6.36781 6.44652 6.67593 7.11974 7.20160 7.23861 7.64909 8.20662 8.69131 8.89676 9.20559 10.78605 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.009432 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.532760 B = 2967.967160 C = 3354.574008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.021 4.021 3 C 0.195 3.805 4 N -0.558 5.558 5 C 0.272 3.728 6 C -0.046 4.046 7 C -0.143 4.143 8 N -0.333 5.333 9 C 0.227 3.773 10 C -0.545 4.545 11 H 0.080 0.920 12 C 0.082 3.918 13 N -0.883 5.883 14 Si 0.872 3.128 15 H -0.269 1.269 16 H -0.278 1.278 17 H -0.263 1.263 18 N -0.317 5.317 19 H 0.060 0.940 20 H 0.056 0.944 21 H 0.055 0.945 22 H 0.080 0.920 23 H 0.083 0.917 24 H 0.092 0.908 25 H 0.097 0.903 26 H 0.058 0.942 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.048 0.952 30 H 0.052 0.948 31 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.584 -1.993 6.630 11.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.061 4.061 3 C -0.087 4.087 4 N -0.288 5.288 5 C -0.005 4.005 6 C -0.085 4.085 7 C -0.202 4.202 8 N -0.121 5.121 9 C 0.107 3.893 10 C -0.584 4.584 11 H 0.098 0.902 12 C -0.123 4.123 13 N -0.520 5.520 14 Si 0.698 3.302 15 H -0.194 1.194 16 H -0.203 1.203 17 H -0.188 1.188 18 N -0.147 5.147 19 H 0.079 0.921 20 H 0.075 0.925 21 H 0.074 0.926 22 H 0.099 0.901 23 H 0.102 0.898 24 H 0.111 0.889 25 H 0.115 0.885 26 H 0.077 0.923 27 H 0.085 0.915 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.070 0.930 31 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -9.510 -2.167 6.036 11.470 hybrid contribution -0.100 1.039 -0.565 1.187 sum -9.610 -1.128 5.471 11.115 Atomic orbital electron populations 1.21683 0.94510 1.01527 1.02284 1.19705 0.95775 0.87353 1.03294 1.23983 1.00313 0.97990 0.86394 1.70173 1.24561 1.02867 1.31217 1.24025 0.97045 0.94937 0.84451 1.20094 0.99102 0.92243 0.97103 1.21701 0.97417 0.99334 1.01708 1.50471 1.44946 1.11205 1.05455 1.20068 0.97914 0.80450 0.90873 1.21104 0.90202 1.12220 1.34826 0.90168 1.24799 0.94903 0.97619 0.95017 1.69869 1.09586 1.34961 1.37533 0.86904 0.80917 0.82768 0.79610 1.19440 1.20336 1.18807 1.77912 1.21900 0.91961 1.22901 0.92128 0.92451 0.92634 0.90131 0.89826 0.88906 0.88482 0.92267 0.91540 0.92758 0.93454 0.93020 0.91972 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.82 9.89 37.15 0.37 -1.45 16 2 C -0.02 -0.32 6.56 -27.89 -0.18 -0.51 16 3 C 0.20 4.01 7.39 -156.85 -1.16 2.85 16 4 N -0.56 -11.69 11.19 -8.16 -0.09 -11.78 16 5 C 0.27 5.68 7.24 -155.69 -1.13 4.55 16 6 C -0.05 -0.75 6.06 -27.88 -0.17 -0.92 16 7 C -0.14 -1.95 9.89 37.16 0.37 -1.58 16 8 N -0.33 -7.77 3.62 -59.51 -0.22 -7.99 16 9 C 0.23 5.41 4.95 -5.19 -0.03 5.39 16 10 C -0.55 -15.14 9.94 -34.44 -0.34 -15.48 16 11 H 0.08 2.53 8.06 -52.49 -0.42 2.11 16 12 C 0.08 2.24 5.47 -17.82 -0.10 2.15 16 13 N -0.88 -25.92 13.96 55.43 0.77 -25.15 16 14 Si 0.87 19.79 27.47 -169.99 -4.67 15.12 16 15 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.26 -5.74 6.54 56.52 0.37 -5.37 16 18 N -0.32 -7.40 12.70 32.42 0.41 -6.99 16 19 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 20 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 21 H 0.05 0.76 8.14 -51.93 -0.42 0.33 16 22 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 23 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 24 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 25 H 0.10 1.68 7.76 -51.93 -0.40 1.28 16 26 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 27 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 28 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.05 1.02 7.15 -51.93 -0.37 0.65 16 30 H 0.05 1.25 7.20 -51.93 -0.37 0.88 16 31 H 0.27 7.34 8.31 -40.82 -0.34 7.00 16 LS Contribution 268.83 15.07 4.05 4.05 Total: -1.00 -31.62 268.83 -6.65 -38.27 By element: Atomic # 1 Polarization: 4.01 SS G_CDS: -4.54 Total: -0.53 kcal Atomic # 6 Polarization: -2.64 SS G_CDS: -2.37 Total: -5.00 kcal Atomic # 7 Polarization: -52.78 SS G_CDS: 0.88 Total: -51.90 kcal Atomic # 14 Polarization: 19.79 SS G_CDS: -4.67 Total: 15.12 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -31.62 -6.65 -38.27 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084065795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.040 kcal (2) G-P(sol) polarization free energy of solvation -31.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 69.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.650 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.267 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.773 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds