Wall clock time and date at job start Sun Mar 29 2020 21:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52990 * 1 3 3 C 1.50706 * 109.47213 * 2 1 4 4 N 1.33242 * 125.52317 * 89.99815 * 3 2 1 5 5 C 1.30826 * 109.83182 * 179.97438 * 4 3 2 6 6 C 1.50702 * 125.96958 * 179.97438 * 5 4 3 7 7 C 1.53000 * 109.46761 * 270.04486 * 6 5 4 8 8 N 1.34439 * 108.07203 * 0.02562 * 5 4 3 9 9 C 1.46506 * 126.81847 * 179.97438 * 8 5 4 10 10 C 1.50699 * 109.46892 * 90.00075 * 9 8 5 11 11 H 1.08002 * 120.00511 * 359.97438 * 10 9 8 12 12 C 1.37884 * 119.99783 * 179.97438 * 10 9 8 13 13 N 1.31514 * 119.99573 * 180.27665 * 12 10 9 14 14 Si 1.86800 * 119.99781 * 359.97438 * 12 10 9 15 15 H 1.48501 * 109.46758 * 89.99934 * 14 12 10 16 16 H 1.48499 * 109.47026 * 209.99782 * 14 12 10 17 17 H 1.48496 * 109.47474 * 329.99818 * 14 12 10 18 18 N 1.30708 * 125.53107 * 270.28754 * 3 2 1 19 19 H 1.08995 * 109.47504 * 179.97438 * 1 2 3 20 20 H 1.09005 * 109.46985 * 299.99795 * 1 2 3 21 21 H 1.09004 * 109.47665 * 59.99474 * 1 2 3 22 22 H 1.08996 * 109.47255 * 240.00233 * 2 1 3 23 23 H 1.09000 * 109.47548 * 119.99772 * 2 1 3 24 24 H 1.09001 * 109.46504 * 30.04208 * 6 5 4 25 25 H 1.08999 * 109.47384 * 150.04214 * 6 5 4 26 26 H 1.08999 * 109.47394 * 59.99734 * 7 6 5 27 27 H 1.09002 * 109.46677 * 179.97438 * 7 6 5 28 28 H 1.08993 * 109.47101 * 299.99328 * 7 6 5 29 29 H 1.08992 * 109.47369 * 330.00157 * 9 8 5 30 30 H 1.09005 * 109.46360 * 209.99772 * 9 8 5 31 31 H 0.97004 * 119.99485 * 179.72881 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 7 2.2903 2.1508 1.0844 5 6 2.7107 3.3381 0.7306 6 6 3.1044 4.4526 1.6654 7 6 1.8774 5.3103 1.9816 8 7 2.7292 3.3908 -0.6126 9 6 3.1319 4.5300 -1.4411 10 6 4.6095 4.4468 -1.7254 11 1 5.1906 3.6277 -1.3283 12 6 5.2196 5.4167 -2.4925 13 7 6.5080 5.3411 -2.7450 14 14 4.2144 6.8331 -3.1799 15 1 4.2115 7.9556 -2.2077 16 1 4.8124 7.2888 -4.4605 17 1 2.8201 6.3810 -3.4180 18 7 2.2805 2.1388 -1.0637 19 1 -0.3634 -1.0276 -0.0005 20 1 -0.3633 0.5138 0.8900 21 1 -0.3634 0.5139 -0.8899 22 1 1.8932 -0.5138 -0.8900 23 1 1.8933 -0.5138 0.8900 24 1 3.4997 4.0295 2.5889 25 1 3.8678 5.0707 1.1929 26 1 1.1140 4.6922 2.4541 27 1 2.1621 6.1161 2.6581 28 1 1.4821 5.7333 1.0581 29 1 2.9153 5.4582 -0.9126 30 1 2.5794 4.5092 -2.3806 31 1 6.9365 6.0213 -3.2879 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084065795.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:48 Heat of formation + Delta-G solvation = 42.512932 kcal Electronic energy + Delta-G solvation = -13692.360097 eV Core-core repulsion = 11395.087717 eV Total energy + Delta-G solvation = -2297.272380 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -43.01000 -36.55686 -35.20404 -34.32530 -33.38583 -31.05884 -29.47286 -25.69633 -25.18380 -23.84522 -21.23056 -21.08105 -19.31448 -17.70261 -16.70163 -16.30096 -15.74115 -15.46026 -14.95531 -14.76699 -14.67288 -14.09048 -13.77663 -13.55023 -13.05734 -12.92483 -12.68029 -12.45737 -12.32929 -12.16933 -12.01276 -11.89324 -11.87404 -10.94393 -10.91119 -10.53871 -10.19601 -8.45735 -6.58874 0.78813 1.32511 1.34409 1.44697 1.62861 1.95343 2.23065 2.86118 3.11877 3.63832 3.82731 4.20679 4.28657 4.33842 4.41362 4.45097 4.55374 4.71702 4.76796 4.99185 4.99589 5.01391 5.13225 5.23836 5.29758 5.30754 5.47545 5.65747 5.85279 6.19470 6.43649 7.05276 7.24658 8.70862 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.033146 B = 0.009432 C = 0.008345 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 844.532760 B = 2967.967160 C = 3354.574008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.024 4.024 3 C 0.198 3.802 4 N -0.569 5.569 5 C 0.270 3.730 6 C -0.048 4.048 7 C -0.134 4.134 8 N -0.358 5.358 9 C 0.238 3.762 10 C -0.557 4.557 11 H 0.022 0.978 12 C 0.026 3.974 13 N -0.934 5.934 14 Si 0.950 3.050 15 H -0.244 1.244 16 H -0.277 1.277 17 H -0.247 1.247 18 N -0.363 5.363 19 H 0.095 0.905 20 H 0.053 0.947 21 H 0.043 0.957 22 H 0.087 0.913 23 H 0.101 0.899 24 H 0.110 0.890 25 H 0.086 0.914 26 H 0.061 0.939 27 H 0.098 0.902 28 H 0.047 0.953 29 H 0.077 0.923 30 H 0.049 0.951 31 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.546 -1.014 7.393 13.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.064 4.064 3 C -0.084 4.084 4 N -0.299 5.299 5 C -0.005 4.005 6 C -0.087 4.087 7 C -0.193 4.193 8 N -0.146 5.146 9 C 0.117 3.883 10 C -0.595 4.595 11 H 0.040 0.960 12 C -0.175 4.175 13 N -0.571 5.571 14 Si 0.770 3.230 15 H -0.168 1.168 16 H -0.202 1.202 17 H -0.170 1.170 18 N -0.192 5.192 19 H 0.114 0.886 20 H 0.072 0.928 21 H 0.062 0.938 22 H 0.106 0.894 23 H 0.119 0.881 24 H 0.128 0.872 25 H 0.105 0.895 26 H 0.080 0.920 27 H 0.117 0.883 28 H 0.066 0.934 29 H 0.095 0.905 30 H 0.067 0.933 31 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -11.483 -1.207 6.820 13.410 hybrid contribution 0.589 0.591 -0.727 1.106 sum -10.895 -0.616 6.093 12.498 Atomic orbital electron populations 1.21627 0.92357 1.03584 1.01465 1.20009 0.97515 0.84391 1.04470 1.25006 0.98304 0.99507 0.85600 1.70264 1.25290 1.03044 1.31278 1.24965 0.95436 0.95916 0.84221 1.20342 1.00349 0.91377 0.96668 1.21677 0.95844 0.99606 1.02144 1.50442 1.46568 1.11324 1.06279 1.19856 0.94889 0.82033 0.91493 1.21154 0.92182 1.10850 1.35309 0.95994 1.25830 0.96036 1.00819 0.94808 1.70026 1.11936 1.36576 1.38585 0.85694 0.79467 0.78766 0.79052 1.16816 1.20184 1.17024 1.77848 1.24020 0.92649 1.24693 0.88624 0.92833 0.93822 0.89444 0.88096 0.87170 0.89543 0.91988 0.88324 0.93359 0.90520 0.93305 0.91515 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.11 9.89 71.98 0.71 -2.40 16 2 C -0.02 -0.70 6.56 29.85 0.20 -0.50 16 3 C 0.20 8.08 7.39 138.63 1.03 9.11 16 4 N -0.57 -23.53 11.19 -179.72 -2.01 -25.54 16 5 C 0.27 11.23 7.24 138.22 1.00 12.23 16 6 C -0.05 -1.51 6.06 29.85 0.18 -1.33 16 7 C -0.13 -3.29 9.89 71.98 0.71 -2.58 16 8 N -0.36 -16.90 3.62 -342.19 -1.24 -18.13 16 9 C 0.24 11.33 4.95 85.63 0.42 11.75 16 10 C -0.56 -31.89 9.94 25.60 0.25 -31.64 16 11 H 0.02 1.46 8.06 -2.91 -0.02 1.44 16 12 C 0.03 1.42 5.47 84.66 0.46 1.89 16 13 N -0.93 -56.24 13.96 21.45 0.30 -55.94 16 14 Si 0.95 40.04 27.47 68.60 1.88 41.92 16 15 H -0.24 -9.35 7.11 99.48 0.71 -8.64 16 16 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 17 H -0.25 -9.68 6.54 99.48 0.65 -9.03 16 18 N -0.36 -17.18 12.70 -51.33 -0.65 -17.84 16 19 H 0.10 1.60 8.14 -2.39 -0.02 1.58 16 20 H 0.05 1.30 8.14 -2.38 -0.02 1.28 16 21 H 0.04 1.12 8.14 -2.39 -0.02 1.11 16 22 H 0.09 2.41 8.14 -2.39 -0.02 2.39 16 23 H 0.10 2.57 8.14 -2.39 -0.02 2.56 16 24 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 25 H 0.09 2.94 7.76 -2.39 -0.02 2.92 16 26 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 27 H 0.10 1.79 8.14 -2.39 -0.02 1.78 16 28 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 29 H 0.08 3.17 7.15 -2.39 -0.02 3.16 16 30 H 0.05 2.33 7.20 -2.38 -0.02 2.32 16 31 H 0.28 15.23 8.31 -92.71 -0.77 14.46 16 Total: -1.00 -71.09 268.83 4.29 -66.80 By element: Atomic # 1 Polarization: 11.15 SS G_CDS: 1.04 Total: 12.19 kcal Atomic # 6 Polarization: -8.43 SS G_CDS: 4.97 Total: -3.46 kcal Atomic # 7 Polarization: -113.85 SS G_CDS: -3.60 Total: -117.45 kcal Atomic # 14 Polarization: 40.04 SS G_CDS: 1.88 Total: 41.92 kcal Total: -71.09 4.29 -66.80 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084065795.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.312 kcal (2) G-P(sol) polarization free energy of solvation -71.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.800 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.513 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds