Wall clock time and date at job start Sun Mar 29 2020 21:55:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39859 * 125.89955 * 2 1 4 4 C 1.35318 * 107.92038 * 179.86291 * 3 2 1 5 5 C 1.50704 * 126.12953 * 180.14715 * 4 3 2 6 6 N 1.46499 * 109.47263 * 265.33920 * 5 4 3 7 7 C 1.46500 * 119.99889 * 272.12150 * 6 5 4 8 8 C 1.36942 * 119.99947 * 92.11898 * 6 5 4 9 9 H 1.07999 * 119.99800 * 21.13777 * 8 6 5 10 10 C 1.38810 * 120.00044 * 201.13109 * 8 6 5 11 11 N 1.31624 * 119.99975 * 12.11313 * 10 8 6 12 12 Si 1.86801 * 120.00095 * 192.11722 * 10 8 6 13 13 H 1.48499 * 109.46881 * 0.02562 * 12 10 8 14 14 H 1.48497 * 109.47033 * 119.99946 * 12 10 8 15 15 H 1.48496 * 109.47046 * 239.99757 * 12 10 8 16 16 N 1.34946 * 107.74545 * 0.40112 * 4 3 2 17 17 C 1.46500 * 126.03771 * 179.74681 * 16 4 3 18 18 N 1.30838 * 125.89564 * 180.31422 * 2 1 3 19 19 H 1.09000 * 109.47271 * 269.71607 * 1 2 3 20 20 H 1.09005 * 109.47198 * 149.70979 * 1 2 3 21 21 H 1.08998 * 109.47129 * 29.71021 * 1 2 3 22 22 H 1.08001 * 126.04237 * 359.97438 * 3 2 1 23 23 H 1.08998 * 109.46891 * 25.33753 * 5 4 3 24 24 H 1.09002 * 109.46976 * 145.33828 * 5 4 3 25 25 H 1.09007 * 109.47049 * 94.57700 * 7 6 5 26 26 H 1.08997 * 109.47042 * 214.57500 * 7 6 5 27 27 H 1.09000 * 109.47164 * 334.57862 * 7 6 5 28 28 H 0.96993 * 120.00114 * 179.97438 * 11 10 8 29 29 H 1.08993 * 109.47217 * 265.98643 * 17 16 4 30 30 H 1.09001 * 109.47082 * 25.99093 * 17 16 4 31 31 H 1.09004 * 109.47054 * 145.98997 * 17 16 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3271 1.1329 0.0000 4 6 3.6142 0.7152 0.0031 5 6 4.8351 1.5987 0.0073 6 7 5.3003 1.7956 -1.3678 7 6 6.2384 0.8431 -1.9671 8 6 4.8583 2.8698 -2.0931 9 1 4.4606 3.7366 -1.5863 10 6 4.9215 2.8446 -3.4795 11 7 5.1771 1.7157 -4.1062 12 14 4.6438 4.4127 -4.4558 13 1 4.3771 5.5363 -3.5222 14 1 5.8544 4.7154 -5.2609 15 1 3.4800 4.2331 -5.3604 16 7 3.6088 -0.6342 -0.0040 17 6 4.7899 -1.5009 -0.0090 18 7 2.2742 -1.0599 -0.0058 19 1 -0.3634 -0.0051 1.0276 20 1 -0.3634 -0.8874 -0.5184 21 1 -0.3633 0.8926 -0.5093 22 1 1.9924 2.1597 -0.0004 23 1 4.5837 2.5637 0.4474 24 1 5.6234 1.1263 0.5935 25 1 5.6839 0.0931 -2.5313 26 1 6.9164 1.3730 -2.6361 27 1 6.8127 0.3546 -1.1800 28 1 5.2209 1.6980 -5.0750 29 1 5.0399 -1.7684 -1.0356 30 1 5.6295 -0.9734 0.4439 31 1 4.5790 -2.4057 0.5612 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084244944.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:23 Heat of formation + Delta-G solvation = 76.592106 kcal Electronic energy + Delta-G solvation = -14003.982686 eV Core-core repulsion = 11708.188090 eV Total energy + Delta-G solvation = -2295.794597 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -41.99622 -37.53333 -34.77590 -33.48425 -31.45116 -30.19410 -28.02415 -27.42902 -26.09848 -23.46983 -21.10123 -20.14987 -18.73454 -17.50630 -16.85992 -16.33765 -15.49751 -15.13996 -15.11520 -14.62869 -14.29830 -14.04774 -13.60678 -13.20488 -13.13968 -12.97774 -12.81700 -12.79049 -12.48164 -12.21192 -12.00160 -11.89568 -11.35927 -10.68556 -9.91340 -9.27248 -8.89837 -7.86155 -5.33543 1.06059 1.46153 1.47480 1.57785 1.81047 1.97404 2.51408 3.30666 3.74078 3.76807 3.98473 4.26196 4.31201 4.40015 4.55604 4.62884 4.77177 4.84487 4.86781 4.88218 5.10454 5.10731 5.30076 5.49143 5.60339 5.70162 5.95178 6.25451 6.33045 6.93317 7.11237 7.79850 8.21644 9.17720 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.032327 B = 0.010692 C = 0.009097 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 865.949252 B = 2618.252654 C = 3077.212923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.055 3.945 3 C -0.296 4.296 4 C 0.081 3.919 5 C 0.202 3.798 6 N -0.603 5.603 7 C 0.179 3.821 8 C -0.256 4.256 9 H 0.079 0.921 10 C -0.054 4.054 11 N -0.940 5.940 12 Si 0.969 3.031 13 H -0.261 1.261 14 H -0.291 1.291 15 H -0.298 1.298 16 N -0.378 5.378 17 C 0.102 3.898 18 N -0.346 5.346 19 H 0.094 0.906 20 H 0.070 0.930 21 H 0.084 0.916 22 H 0.143 0.857 23 H 0.085 0.915 24 H 0.080 0.920 25 H -0.005 1.005 26 H 0.022 0.978 27 H 0.038 0.962 28 H 0.246 0.754 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.395 -2.348 9.367 9.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.110 4.110 3 C -0.326 4.326 4 C -0.050 4.050 5 C 0.073 3.927 6 N -0.324 5.324 7 C 0.034 3.966 8 C -0.386 4.386 9 H 0.097 0.903 10 C -0.249 4.249 11 N -0.587 5.587 12 Si 0.798 3.202 13 H -0.185 1.185 14 H -0.218 1.218 15 H -0.226 1.226 16 N -0.161 5.161 17 C -0.038 4.038 18 N -0.170 5.170 19 H 0.112 0.888 20 H 0.089 0.911 21 H 0.103 0.897 22 H 0.160 0.840 23 H 0.103 0.897 24 H 0.098 0.902 25 H 0.013 0.987 26 H 0.041 0.959 27 H 0.057 0.943 28 H 0.055 0.945 29 H 0.078 0.922 30 H 0.122 0.878 31 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.154 -3.731 9.197 10.156 hybrid contribution -0.143 1.325 -1.196 1.791 sum -2.298 -2.406 8.001 8.665 Atomic orbital electron populations 1.20213 0.84504 1.03512 1.03868 1.22864 0.98443 0.90590 0.99089 1.21279 0.91848 0.99811 1.19703 1.22925 0.99740 0.84921 0.97408 1.19863 0.89574 0.96335 0.86882 1.44327 1.48969 1.27729 1.11396 1.20609 0.90672 0.91369 0.93949 1.19647 1.36520 0.93745 0.88737 0.90302 1.25808 1.01501 0.99568 0.98007 1.70263 1.55501 1.25735 1.07235 0.85163 0.76600 0.79897 0.78580 1.18474 1.21773 1.22560 1.48511 1.05372 1.04842 1.57354 1.21961 0.83871 0.94946 1.03066 1.77020 0.87511 1.23968 1.28534 0.88783 0.91107 0.89704 0.83960 0.89691 0.90199 0.98655 0.95927 0.94323 0.94499 0.92236 0.87769 0.88183 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.71 10.45 71.24 0.74 -0.96 16 2 C 0.06 2.12 7.22 43.10 0.31 2.43 16 3 C -0.30 -12.05 10.65 21.99 0.23 -11.82 16 4 C 0.08 3.33 6.51 41.41 0.27 3.60 16 5 C 0.20 7.84 5.86 85.63 0.50 8.35 16 6 N -0.60 -29.16 2.91 -731.29 -2.13 -31.29 16 7 C 0.18 8.50 8.90 127.77 1.14 9.64 16 8 C -0.26 -13.75 9.68 84.03 0.81 -12.93 16 9 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 10 C -0.05 -3.02 5.12 84.86 0.43 -2.59 16 11 N -0.94 -56.09 10.55 21.65 0.23 -55.86 16 12 Si 0.97 45.07 29.57 68.60 2.03 47.10 16 13 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 14 H -0.29 -13.47 7.11 99.48 0.71 -12.77 16 15 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 16 N -0.38 -14.94 4.01 -356.03 -1.43 -16.37 16 17 C 0.10 3.10 11.21 127.77 1.43 4.53 16 18 N -0.35 -14.26 12.58 -47.39 -0.60 -14.85 16 19 H 0.09 2.09 8.14 -2.39 -0.02 2.07 16 20 H 0.07 1.85 8.14 -2.38 -0.02 1.83 16 21 H 0.08 2.10 8.14 -2.39 -0.02 2.08 16 22 H 0.14 5.42 8.06 -2.91 -0.02 5.40 16 23 H 0.08 3.11 8.00 -2.39 -0.02 3.09 16 24 H 0.08 2.58 6.94 -2.39 -0.02 2.56 16 25 H 0.00 -0.26 7.42 -2.38 -0.02 -0.28 16 26 H 0.02 1.16 7.15 -2.39 -0.02 1.15 16 27 H 0.04 1.47 7.86 -2.39 -0.02 1.45 16 28 H 0.25 14.34 8.31 -92.71 -0.77 13.57 16 29 H 0.06 1.95 8.14 -2.39 -0.02 1.93 16 30 H 0.10 2.64 7.03 -2.39 -0.02 2.62 16 31 H 0.10 2.50 8.14 -2.39 -0.02 2.48 16 Total: -1.00 -68.93 265.87 5.08 -63.85 By element: Atomic # 1 Polarization: 6.07 SS G_CDS: 1.10 Total: 7.17 kcal Atomic # 6 Polarization: -5.63 SS G_CDS: 5.88 Total: 0.25 kcal Atomic # 7 Polarization: -114.45 SS G_CDS: -3.92 Total: -118.38 kcal Atomic # 14 Polarization: 45.07 SS G_CDS: 2.03 Total: 47.10 kcal Total: -68.93 5.08 -63.85 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084244944.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 140.441 kcal (2) G-P(sol) polarization free energy of solvation -68.932 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 71.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.084 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.849 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds