Wall clock time and date at job start Sun Mar 29 2020 21:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35311 * 126.12159 * 2 1 4 4 C 1.50702 * 126.04475 * 359.93966 * 3 2 1 5 5 N 1.46897 * 109.47208 * 80.00095 * 4 3 2 6 6 C 1.46901 * 111.00037 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46758 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00488 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00309 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99746 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47385 * 89.99986 * 11 9 7 13 13 H 1.48505 * 109.47004 * 209.99851 * 11 9 7 14 14 H 1.48503 * 109.47180 * 329.99397 * 11 9 7 15 15 C 1.39872 * 107.91683 * 179.97438 * 3 2 1 16 16 N 1.30828 * 108.20306 * 359.97438 * 15 3 2 17 17 N 1.34940 * 126.13005 * 179.68744 * 2 1 3 18 18 C 1.46503 * 126.03754 * 0.03469 * 17 2 1 19 19 H 1.08999 * 109.47015 * 90.00502 * 1 2 3 20 20 H 1.09000 * 109.46646 * 209.99654 * 1 2 3 21 21 H 1.09000 * 109.47248 * 330.00372 * 1 2 3 22 22 H 1.09004 * 109.47120 * 200.00381 * 4 3 2 23 23 H 1.09004 * 109.47157 * 320.00123 * 4 3 2 24 24 H 1.00897 * 110.99768 * 303.95813 * 5 4 3 25 25 H 1.08998 * 109.47094 * 299.99431 * 6 5 4 26 26 H 1.08994 * 109.47000 * 59.99886 * 6 5 4 27 27 H 0.96996 * 120.00284 * 180.02562 * 10 9 7 28 28 H 1.08009 * 125.89832 * 179.97438 * 15 3 2 29 29 H 1.08999 * 109.47072 * 89.99750 * 18 17 2 30 30 H 1.08995 * 109.47552 * 210.00247 * 18 17 2 31 31 H 1.09005 * 109.47194 * 330.00181 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0013 5 7 1.4631 2.9210 1.3621 6 6 1.0063 4.3166 1.3993 7 6 0.6254 4.6830 2.8106 8 1 0.7142 3.9522 3.6009 9 6 0.1645 5.9513 3.0931 10 7 -0.1674 6.2713 4.3248 11 14 0.0116 7.2154 1.7262 12 1 -1.3411 7.1279 1.1201 13 1 0.2165 8.5760 2.2851 14 1 1.0381 6.9475 0.6871 15 6 3.6334 0.6560 0.0006 16 7 3.6334 -0.6523 0.0015 17 7 2.3027 -1.0899 0.0059 18 6 1.8541 -2.4845 0.0128 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 2.6515 3.1690 -0.3526 23 1 0.9830 2.6320 -0.6627 24 1 0.7600 2.3006 1.7346 25 1 1.8086 4.9707 1.0577 26 1 0.1403 4.4330 0.7477 27 1 -0.4920 7.1634 4.5235 28 1 4.5084 1.2893 0.0004 29 1 1.7433 -2.8356 -1.0131 30 1 2.5897 -3.1003 0.5302 31 1 0.8953 -2.5552 0.5266 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086551898.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:24 Heat of formation + Delta-G solvation = 74.466860 kcal Electronic energy + Delta-G solvation = -13328.446980 eV Core-core repulsion = 11032.560225 eV Total energy + Delta-G solvation = -2295.886754 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -41.11097 -35.59751 -33.37927 -32.65135 -31.53233 -28.61576 -26.65364 -26.34807 -23.41783 -21.05042 -20.68031 -19.14768 -16.84594 -16.30562 -15.60093 -14.79212 -14.28739 -14.12283 -13.68424 -13.59296 -13.13673 -12.69493 -12.51321 -12.44084 -12.29207 -12.10322 -11.62545 -11.15512 -10.70582 -10.61388 -10.20827 -9.78904 -9.25042 -9.09089 -8.57536 -8.13520 -7.35606 -6.03076 -4.00793 1.99960 2.62684 3.01079 3.30342 3.38184 3.41374 4.44616 4.56838 4.76152 5.01603 5.10552 5.22483 5.28931 5.30961 5.45687 5.49633 5.56212 5.78371 5.87283 6.17451 6.22163 6.47358 6.82324 6.85623 7.05855 7.16830 7.65742 7.88378 7.96474 8.40860 8.69865 9.05575 9.59094 11.10349 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056175 B = 0.006327 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.322403 B = 4424.720989 C = 4519.581837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.082 3.918 3 C -0.219 4.219 4 C 0.132 3.868 5 N -0.675 5.675 6 C 0.163 3.837 7 C -0.515 4.515 8 H 0.078 0.922 9 C 0.068 3.932 10 N -0.902 5.902 11 Si 0.878 3.122 12 H -0.278 1.278 13 H -0.286 1.286 14 H -0.266 1.266 15 C 0.066 3.934 16 N -0.308 5.308 17 N -0.380 5.380 18 C 0.104 3.896 19 H 0.076 0.924 20 H 0.069 0.931 21 H 0.087 0.913 22 H 0.072 0.928 23 H 0.023 0.977 24 H 0.332 0.668 25 H 0.027 0.973 26 H -0.021 1.021 27 H 0.263 0.737 28 H 0.182 0.818 29 H 0.069 0.931 30 H 0.086 0.914 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.228 -13.849 -11.128 17.808 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.045 4.045 3 C -0.230 4.230 4 C 0.002 3.998 5 N -0.306 5.306 6 C 0.035 3.965 7 C -0.553 4.553 8 H 0.096 0.904 9 C -0.134 4.134 10 N -0.541 5.541 11 Si 0.706 3.294 12 H -0.204 1.204 13 H -0.212 1.212 14 H -0.191 1.191 15 C -0.120 4.120 16 N -0.129 5.129 17 N -0.163 5.163 18 C -0.038 4.038 19 H 0.095 0.905 20 H 0.088 0.912 21 H 0.106 0.894 22 H 0.090 0.910 23 H 0.041 0.959 24 H 0.149 0.851 25 H 0.045 0.955 26 H -0.004 1.004 27 H 0.073 0.927 28 H 0.199 0.801 29 H 0.088 0.912 30 H 0.104 0.896 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 2.485 -14.742 -10.825 18.458 hybrid contribution -1.438 1.366 -0.978 2.212 sum 1.047 -13.376 -11.804 17.870 Atomic orbital electron populations 1.20461 0.87573 1.04013 1.02990 1.20836 0.94376 0.87152 1.02159 1.19911 0.92410 0.95505 1.15221 1.20164 0.98659 0.89601 0.91371 1.60542 1.46783 1.05110 1.18145 1.20028 0.93286 0.85713 0.97487 1.21082 1.42598 0.98620 0.92992 0.90371 1.24913 0.94963 0.98127 0.95375 1.69902 1.44905 1.20618 1.18660 0.86812 0.78799 0.81096 0.82721 1.20394 1.21203 1.19075 1.23735 0.97869 0.91695 0.98703 1.77292 0.96478 1.13154 1.25970 1.48297 1.04031 1.05635 1.58368 1.21746 1.00905 0.78298 1.02830 0.90494 0.91249 0.89392 0.90982 0.95914 0.85066 0.95475 1.00376 0.92689 0.80102 0.91229 0.89552 0.89751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.02 9.90 36.01 0.36 -0.66 16 2 C 0.08 1.17 6.93 -82.27 -0.57 0.60 16 3 C -0.22 -3.54 5.61 -105.05 -0.59 -4.13 16 4 C 0.13 2.31 5.68 -4.98 -0.03 2.28 16 5 N -0.67 -14.33 6.48 -116.34 -0.75 -15.08 16 6 C 0.16 3.99 4.51 -4.98 -0.02 3.96 16 7 C -0.51 -14.89 9.87 -34.44 -0.34 -15.23 16 8 H 0.08 2.46 8.06 -52.48 -0.42 2.04 16 9 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 10 N -0.90 -27.93 13.96 55.43 0.77 -27.15 16 11 Si 0.88 21.65 27.47 -169.99 -4.67 16.98 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.27 -6.32 6.54 56.52 0.37 -5.95 16 15 C 0.07 1.04 11.96 -17.37 -0.21 0.83 16 16 N -0.31 -4.94 12.57 30.63 0.39 -4.55 16 17 N -0.38 -5.27 4.01 -63.88 -0.26 -5.53 16 18 C 0.10 0.92 11.27 59.85 0.67 1.60 16 19 H 0.08 0.73 8.14 -51.93 -0.42 0.30 16 20 H 0.07 0.61 7.07 -51.93 -0.37 0.25 16 21 H 0.09 1.08 7.05 -51.93 -0.37 0.71 16 22 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 23 H 0.02 0.38 8.13 -51.93 -0.42 -0.04 16 24 H 0.33 6.85 7.88 -39.29 -0.31 6.54 16 25 H 0.03 0.68 7.20 -51.93 -0.37 0.31 16 26 H -0.02 -0.51 7.57 -51.93 -0.39 -0.90 16 27 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 28 H 0.18 2.43 8.06 -52.48 -0.42 2.00 16 29 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 31 H 0.08 0.57 7.05 -51.93 -0.37 0.20 16 LS Contribution 265.39 15.07 4.00 4.00 Total: -1.00 -33.53 265.39 -5.65 -39.18 By element: Atomic # 1 Polarization: 5.32 SS G_CDS: -4.30 Total: 1.02 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -0.82 Total: -8.86 kcal Atomic # 7 Polarization: -52.47 SS G_CDS: 0.15 Total: -52.32 kcal Atomic # 14 Polarization: 21.65 SS G_CDS: -4.67 Total: 16.98 kcal Total LS contribution 4.00 Total: 4.00 kcal Total: -33.53 -5.65 -39.18 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086551898.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 113.646 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 80.114 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.179 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds