Wall clock time and date at job start Sun Mar 29 2020 21:55:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35311 * 126.12159 * 2 1 4 4 C 1.50702 * 126.04475 * 359.93966 * 3 2 1 5 5 N 1.46897 * 109.47208 * 80.00095 * 4 3 2 6 6 C 1.46901 * 111.00037 * 180.02562 * 5 4 3 7 7 C 1.50700 * 109.46758 * 179.97438 * 6 5 4 8 8 H 1.08004 * 120.00488 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99916 * 179.97438 * 7 6 5 10 10 N 1.31515 * 120.00309 * 180.02562 * 9 7 6 11 11 Si 1.86804 * 119.99746 * 0.02562 * 9 7 6 12 12 H 1.48492 * 109.47385 * 89.99986 * 11 9 7 13 13 H 1.48505 * 109.47004 * 209.99851 * 11 9 7 14 14 H 1.48503 * 109.47180 * 329.99397 * 11 9 7 15 15 C 1.39872 * 107.91683 * 179.97438 * 3 2 1 16 16 N 1.30828 * 108.20306 * 359.97438 * 15 3 2 17 17 N 1.34940 * 126.13005 * 179.68744 * 2 1 3 18 18 C 1.46503 * 126.03754 * 0.03469 * 17 2 1 19 19 H 1.08999 * 109.47015 * 90.00502 * 1 2 3 20 20 H 1.09000 * 109.46646 * 209.99654 * 1 2 3 21 21 H 1.09000 * 109.47248 * 330.00372 * 1 2 3 22 22 H 1.09004 * 109.47120 * 200.00381 * 4 3 2 23 23 H 1.09004 * 109.47157 * 320.00123 * 4 3 2 24 24 H 1.00897 * 110.99768 * 303.95813 * 5 4 3 25 25 H 1.08998 * 109.47094 * 299.99431 * 6 5 4 26 26 H 1.08994 * 109.47000 * 59.99886 * 6 5 4 27 27 H 0.96996 * 120.00284 * 180.02562 * 10 9 7 28 28 H 1.08009 * 125.89832 * 179.97438 * 15 3 2 29 29 H 1.08999 * 109.47072 * 89.99750 * 18 17 2 30 30 H 1.08995 * 109.47552 * 210.00247 * 18 17 2 31 31 H 1.09005 * 109.47194 * 330.00181 * 18 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3047 1.0930 0.0000 4 6 1.8432 2.5276 -0.0013 5 7 1.4631 2.9210 1.3621 6 6 1.0063 4.3166 1.3993 7 6 0.6254 4.6830 2.8106 8 1 0.7142 3.9522 3.6009 9 6 0.1645 5.9513 3.0931 10 7 -0.1674 6.2713 4.3248 11 14 0.0116 7.2154 1.7262 12 1 -1.3411 7.1279 1.1201 13 1 0.2165 8.5760 2.2851 14 1 1.0381 6.9475 0.6871 15 6 3.6334 0.6560 0.0006 16 7 3.6334 -0.6523 0.0015 17 7 2.3027 -1.0899 0.0059 18 6 1.8541 -2.4845 0.0128 19 1 -0.3633 -0.0001 -1.0277 20 1 -0.3632 -0.8900 0.5138 21 1 -0.3634 0.8900 0.5138 22 1 2.6515 3.1690 -0.3526 23 1 0.9830 2.6320 -0.6627 24 1 0.7600 2.3006 1.7346 25 1 1.8086 4.9707 1.0577 26 1 0.1403 4.4330 0.7477 27 1 -0.4920 7.1634 4.5235 28 1 4.5084 1.2893 0.0004 29 1 1.7433 -2.8356 -1.0131 30 1 2.5897 -3.1003 0.5302 31 1 0.8953 -2.5552 0.5266 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086551898.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:55:24 Heat of formation + Delta-G solvation = 49.453877 kcal Electronic energy + Delta-G solvation = -13329.531624 eV Core-core repulsion = 11032.560225 eV Total energy + Delta-G solvation = -2296.971399 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.21091 -37.23043 -34.75813 -34.26299 -32.90507 -30.12159 -27.95519 -27.49752 -24.88110 -22.97950 -21.79512 -20.28368 -18.91233 -17.50798 -16.64396 -16.49331 -15.95870 -15.33719 -15.16525 -14.91849 -14.40716 -13.99324 -13.91701 -13.57234 -13.41020 -13.13875 -13.07883 -12.71618 -12.46988 -12.20678 -11.78223 -11.58943 -11.36738 -10.78794 -10.14637 -9.35816 -8.96345 -8.27238 -6.31866 0.91254 1.37780 1.40707 1.52206 1.69198 1.81251 2.37521 3.07083 3.64540 3.80541 3.84959 4.16349 4.30006 4.38767 4.44444 4.57718 4.64873 4.71784 4.83735 4.85364 5.03543 5.08055 5.14821 5.29362 5.56794 5.70848 6.00249 6.18078 6.63075 6.70486 6.75966 6.81433 7.33485 8.89728 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.056175 B = 0.006327 C = 0.006194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 498.322403 B = 4424.720989 C = 4519.581837 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.091 4.091 2 C 0.089 3.911 3 C -0.251 4.251 4 C 0.140 3.860 5 N -0.686 5.686 6 C 0.174 3.826 7 C -0.528 4.528 8 H 0.033 0.967 9 C 0.007 3.993 10 N -0.950 5.950 11 Si 0.954 3.046 12 H -0.264 1.264 13 H -0.283 1.283 14 H -0.249 1.249 15 C 0.054 3.946 16 N -0.334 5.334 17 N -0.379 5.379 18 C 0.091 3.909 19 H 0.098 0.902 20 H 0.094 0.906 21 H 0.073 0.927 22 H 0.073 0.927 23 H 0.035 0.965 24 H 0.333 0.667 25 H 0.026 0.974 26 H -0.010 1.010 27 H 0.267 0.733 28 H 0.193 0.807 29 H 0.090 0.910 30 H 0.090 0.910 31 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.577 -14.397 -13.203 19.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.040 4.040 3 C -0.262 4.262 4 C 0.011 3.989 5 N -0.317 5.317 6 C 0.045 3.955 7 C -0.566 4.566 8 H 0.052 0.948 9 C -0.190 4.190 10 N -0.590 5.590 11 Si 0.777 3.223 12 H -0.189 1.189 13 H -0.208 1.208 14 H -0.172 1.172 15 C -0.131 4.131 16 N -0.156 5.156 17 N -0.162 5.162 18 C -0.048 4.048 19 H 0.116 0.884 20 H 0.113 0.887 21 H 0.092 0.908 22 H 0.091 0.909 23 H 0.053 0.947 24 H 0.150 0.850 25 H 0.044 0.956 26 H 0.008 0.992 27 H 0.076 0.924 28 H 0.210 0.790 29 H 0.108 0.892 30 H 0.109 0.891 31 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.849 -15.338 -12.915 20.136 hybrid contribution -1.241 1.376 -0.264 1.872 sum 0.607 -13.962 -13.179 19.209 Atomic orbital electron populations 1.20570 0.85243 1.04568 1.04520 1.21291 0.95792 0.86862 1.00104 1.19895 0.93037 0.95330 1.17987 1.20092 0.98991 0.90630 0.89209 1.60451 1.46611 1.03605 1.21078 1.19773 0.93454 0.87652 0.94586 1.21358 1.42811 0.98122 0.94331 0.94833 1.25909 0.94322 1.00600 0.98202 1.70062 1.46142 1.21526 1.21320 0.85621 0.79798 0.77577 0.79342 1.18863 1.20833 1.17214 1.24005 0.98433 0.91994 0.98687 1.77230 0.98132 1.13256 1.26980 1.48697 1.03273 1.07239 1.56982 1.22173 1.02134 0.75854 1.04666 0.88353 0.88729 0.90780 0.90905 0.94664 0.84963 0.95581 0.99242 0.92383 0.79015 0.89191 0.89086 0.87253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.75 9.90 71.24 0.70 -1.05 16 2 C 0.09 2.37 6.93 41.41 0.29 2.65 16 3 C -0.25 -7.85 5.61 -20.14 -0.11 -7.96 16 4 C 0.14 4.73 5.68 85.56 0.49 5.21 16 5 N -0.69 -28.88 6.48 -521.98 -3.38 -32.26 16 6 C 0.17 8.38 4.51 85.56 0.39 8.76 16 7 C -0.53 -31.08 9.87 25.60 0.25 -30.83 16 8 H 0.03 2.20 8.06 -2.91 -0.02 2.18 16 9 C 0.01 0.40 5.47 84.65 0.46 0.87 16 10 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 11 Si 0.95 44.04 27.47 68.60 1.88 45.93 16 12 H -0.26 -11.54 7.11 99.48 0.71 -10.83 16 13 H -0.28 -12.82 7.11 99.48 0.71 -12.11 16 14 H -0.25 -10.70 6.54 99.48 0.65 -10.05 16 15 C 0.05 1.67 11.96 85.24 1.02 2.69 16 16 N -0.33 -10.42 12.57 -57.02 -0.72 -11.13 16 17 N -0.38 -9.76 4.01 -356.03 -1.43 -11.19 16 18 C 0.09 1.36 11.27 127.77 1.44 2.80 16 19 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 20 H 0.09 1.33 7.07 -2.39 -0.02 1.32 16 21 H 0.07 1.68 7.05 -2.39 -0.02 1.66 16 22 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 23 H 0.04 1.10 8.13 -2.39 -0.02 1.08 16 24 H 0.33 13.74 7.88 -89.70 -0.71 13.03 16 25 H 0.03 1.27 7.20 -2.39 -0.02 1.25 16 26 H -0.01 -0.46 7.57 -2.39 -0.02 -0.48 16 27 H 0.27 15.65 8.31 -92.71 -0.77 14.88 16 28 H 0.19 5.13 8.06 -2.91 -0.02 5.11 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.11 1.07 7.05 -2.38 -0.02 1.06 16 Total: -1.00 -72.89 265.39 1.94 -70.95 By element: Atomic # 1 Polarization: 13.86 SS G_CDS: 0.36 Total: 14.22 kcal Atomic # 6 Polarization: -21.78 SS G_CDS: 4.93 Total: -16.86 kcal Atomic # 7 Polarization: -109.01 SS G_CDS: -5.23 Total: -114.23 kcal Atomic # 14 Polarization: 44.04 SS G_CDS: 1.88 Total: 45.93 kcal Total: -72.89 1.94 -70.95 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086551898.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.400 kcal (2) G-P(sol) polarization free energy of solvation -72.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 47.514 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.940 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.946 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds