Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47140 * 269.99879 * 3 2 1 5 5 H 1.48500 * 109.47064 * 30.00318 * 3 2 1 6 6 H 1.48503 * 109.47065 * 149.99871 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00374 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.48039 * 110.99999 * 189.99868 * 10 9 7 12 12 C 1.53504 * 86.04019 * 137.28674 * 11 10 9 13 13 C 1.48052 * 110.99480 * 289.44779 * 10 9 7 14 14 C 1.52641 * 113.60054 * 222.07580 * 12 11 10 15 15 C 1.53153 * 109.24879 * 284.75956 * 14 12 11 16 16 C 1.52978 * 109.42927 * 302.27044 * 15 14 12 17 17 C 1.52971 * 109.68973 * 61.74676 * 16 15 14 18 18 C 1.52646 * 113.59192 * 90.94099 * 12 11 10 19 19 H 0.97002 * 119.99863 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47240 * 59.99843 * 9 7 2 21 21 H 1.09008 * 109.46714 * 299.99895 * 9 7 2 22 22 H 1.09001 * 113.78026 * 23.01152 * 11 10 9 23 23 H 1.08994 * 113.88653 * 251.57938 * 11 10 9 24 24 H 1.08995 * 113.78170 * 108.41947 * 13 10 9 25 25 H 1.09000 * 113.77865 * 336.98727 * 13 10 9 26 26 H 1.09001 * 109.50598 * 44.68912 * 14 12 11 27 27 H 1.09000 * 109.50559 * 164.82674 * 14 12 11 28 28 H 1.08998 * 109.47916 * 182.28441 * 15 14 12 29 29 H 1.09000 * 109.47588 * 62.25932 * 15 14 12 30 30 H 1.08995 * 109.43390 * 301.67877 * 16 15 14 31 31 H 1.09000 * 109.39802 * 181.79045 * 16 15 14 32 32 H 1.09000 * 109.47637 * 178.27495 * 17 16 15 33 33 H 1.08992 * 109.48536 * 58.24734 * 17 16 15 34 34 H 1.08998 * 109.50651 * 195.18426 * 18 12 11 35 35 H 1.08998 * 109.50682 * 315.30922 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6158 -0.0015 11 6 1.5159 -4.9033 -0.2425 12 6 2.6876 -5.2339 -1.1776 13 6 2.9011 -3.7193 -1.3043 14 6 2.2592 -5.9028 -2.4811 15 6 1.8922 -7.3633 -2.2023 16 6 3.0900 -8.0780 -1.5740 17 6 3.4427 -7.4176 -0.2401 18 6 3.8380 -5.9580 -0.4830 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 0.5598 -4.8005 -0.7556 23 1 1.4603 -5.5456 0.6364 24 1 3.9481 -3.4185 -1.2688 25 1 2.3547 -3.2661 -2.1315 26 1 1.3937 -5.3817 -2.8902 27 1 3.0803 -5.8640 -3.1969 28 1 1.6246 -7.8557 -3.1372 29 1 1.0459 -7.4008 -1.5164 30 1 3.9446 -8.0140 -2.2475 31 1 2.8390 -9.1252 -1.4051 32 1 4.2768 -7.9484 0.2190 33 1 2.5789 -7.4545 0.4235 34 1 4.7254 -5.9215 -1.1149 35 1 4.0494 -5.4745 0.4707 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000086681349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = 5.591192 kcal Electronic energy + Delta-G solvation = -14216.884626 eV Core-core repulsion = 12021.551542 eV Total energy + Delta-G solvation = -2195.333084 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.13174 -36.15019 -32.82465 -30.67493 -30.15035 -26.98179 -25.42935 -23.75016 -22.58479 -21.09247 -19.90737 -17.75453 -16.30646 -15.40074 -14.91674 -14.59660 -14.17131 -13.81860 -13.49531 -13.18408 -12.61330 -12.22746 -12.05196 -11.77362 -11.41126 -11.23842 -11.01353 -10.87041 -10.77716 -10.57994 -10.45143 -10.12857 -9.81899 -9.59812 -9.25075 -9.06593 -8.44621 -7.60311 -6.01516 -4.02903 3.32520 3.38406 3.43420 4.44509 4.71987 4.82685 4.93134 5.12171 5.30598 5.34536 5.45487 5.55054 5.57136 5.71146 5.81281 5.84801 6.07128 6.14491 6.18216 6.20803 6.26503 6.32512 6.33384 6.44856 6.50708 6.61014 6.73143 6.84284 6.91741 7.30900 7.70803 7.95300 8.22036 8.50556 9.05045 9.61391 11.09850 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.065680 B = 0.006943 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.205190 B = 4032.037251 C = 4130.173007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.055 3.945 3 Si 0.898 3.102 4 H -0.281 1.281 5 H -0.286 1.286 6 H -0.273 1.273 7 C -0.507 4.507 8 H 0.061 0.939 9 C 0.161 3.839 10 N -0.477 5.477 11 C 0.008 3.992 12 C -0.090 4.090 13 C 0.028 3.972 14 C -0.105 4.105 15 C -0.116 4.116 16 C -0.117 4.117 17 C -0.118 4.118 18 C -0.087 4.087 19 H 0.261 0.739 20 H -0.004 1.004 21 H 0.029 0.971 22 H 0.057 0.943 23 H 0.072 0.928 24 H 0.072 0.928 25 H 0.063 0.937 26 H 0.060 0.940 27 H 0.059 0.941 28 H 0.055 0.945 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.056 0.944 33 H 0.061 0.939 34 H 0.057 0.943 35 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.989 -13.708 -3.944 15.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.146 4.146 3 Si 0.725 3.275 4 H -0.207 1.207 5 H -0.212 1.212 6 H -0.198 1.198 7 C -0.546 4.546 8 H 0.079 0.921 9 C 0.034 3.966 10 N -0.199 5.199 11 C -0.122 4.122 12 C -0.090 4.090 13 C -0.101 4.101 14 C -0.143 4.143 15 C -0.154 4.154 16 C -0.154 4.154 17 C -0.155 4.155 18 C -0.124 4.124 19 H 0.070 0.930 20 H 0.014 0.986 21 H 0.048 0.952 22 H 0.075 0.925 23 H 0.091 0.909 24 H 0.091 0.909 25 H 0.081 0.919 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.076 0.924 35 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 5.194 -13.454 -3.318 14.798 hybrid contribution -0.297 1.061 -0.728 1.321 sum 4.897 -12.393 -4.045 13.926 Atomic orbital electron populations 1.69963 1.06077 1.26727 1.51118 1.25000 0.94869 0.99350 0.95418 0.86501 0.79836 0.83092 0.78027 1.20729 1.21223 1.19776 1.21116 0.93415 0.90063 1.49998 0.92075 1.20182 0.91124 0.88996 0.96284 1.68509 1.21017 1.01837 1.28551 1.23831 0.95419 0.94939 0.97971 1.22069 0.96509 0.95439 0.94987 1.23648 1.00383 0.92594 0.93522 1.21500 1.00744 0.95202 0.96866 1.21506 0.98079 0.95711 1.00090 1.21497 0.98262 0.98495 0.97171 1.21535 1.00961 0.96036 0.96988 1.21184 0.96269 0.94176 1.00811 0.92952 0.98606 0.95248 0.92491 0.90949 0.90917 0.91863 0.92084 0.92192 0.92643 0.92024 0.92363 0.92712 0.92506 0.91983 0.92424 0.90778 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.33 13.29 55.43 0.74 -26.59 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.27 -6.62 7.11 56.52 0.40 -6.22 16 7 C -0.51 -14.75 8.84 -34.44 -0.30 -15.05 16 8 H 0.06 1.77 7.80 -52.48 -0.41 1.36 16 9 C 0.16 4.35 4.58 -4.98 -0.02 4.32 16 10 N -0.48 -10.73 6.09 -241.63 -1.47 -12.20 16 11 C 0.01 0.14 6.73 -2.94 -0.02 0.12 16 12 C -0.09 -1.43 0.78 -154.43 -0.12 -1.55 16 13 C 0.03 0.55 6.59 -2.95 -0.02 0.53 16 14 C -0.11 -1.44 5.10 -26.84 -0.14 -1.58 16 15 C -0.12 -1.36 5.85 -26.66 -0.16 -1.52 16 16 C -0.12 -1.26 5.86 -26.76 -0.16 -1.42 16 17 C -0.12 -1.40 5.85 -26.67 -0.16 -1.56 16 18 C -0.09 -1.23 5.05 -26.83 -0.14 -1.37 16 19 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 20 H 0.00 -0.11 7.70 -51.93 -0.40 -0.51 16 21 H 0.03 0.86 8.14 -51.92 -0.42 0.44 16 22 H 0.06 1.08 7.70 -51.93 -0.40 0.68 16 23 H 0.07 1.26 7.45 -51.93 -0.39 0.87 16 24 H 0.07 1.41 8.09 -51.93 -0.42 0.99 16 25 H 0.06 1.32 7.73 -51.93 -0.40 0.92 16 26 H 0.06 0.88 8.09 -51.93 -0.42 0.46 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.75 8.00 -51.93 -0.42 0.33 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.06 0.77 7.47 -51.93 -0.39 0.38 16 34 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 1.17 8.01 -51.93 -0.42 0.75 16 LS Contribution 274.25 15.07 4.13 4.13 Total: -1.00 -30.11 274.25 -9.10 -39.21 By element: Atomic # 1 Polarization: 2.10 SS G_CDS: -6.15 Total: -4.05 kcal Atomic # 6 Polarization: -16.24 SS G_CDS: -1.33 Total: -17.57 kcal Atomic # 7 Polarization: -38.06 SS G_CDS: -0.73 Total: -38.79 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.13 Total: 4.13 kcal Total: -30.11 -9.10 -39.21 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.798 kcal (2) G-P(sol) polarization free energy of solvation -30.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.689 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.207 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.591 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds