Wall clock time and date at job start Sun Mar 29 2020 22:02:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86800 * 120.00002 * 2 1 4 4 H 1.48501 * 109.47140 * 269.99879 * 3 2 1 5 5 H 1.48500 * 109.47064 * 30.00318 * 3 2 1 6 6 H 1.48503 * 109.47065 * 149.99871 * 3 2 1 7 7 C 1.37877 * 119.99792 * 180.02562 * 2 1 3 8 8 H 1.08003 * 119.99813 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00374 * 0.02562 * 7 2 1 10 10 N 1.46901 * 109.47526 * 180.02562 * 9 7 2 11 11 C 1.48039 * 110.99999 * 189.99868 * 10 9 7 12 12 C 1.53504 * 86.04019 * 137.28674 * 11 10 9 13 13 C 1.48052 * 110.99480 * 289.44779 * 10 9 7 14 14 C 1.52641 * 113.60054 * 222.07580 * 12 11 10 15 15 C 1.53153 * 109.24879 * 284.75956 * 14 12 11 16 16 C 1.52978 * 109.42927 * 302.27044 * 15 14 12 17 17 C 1.52971 * 109.68973 * 61.74676 * 16 15 14 18 18 C 1.52646 * 113.59192 * 90.94099 * 12 11 10 19 19 H 0.97002 * 119.99863 * 0.02562 * 1 2 3 20 20 H 1.08994 * 109.47240 * 59.99843 * 9 7 2 21 21 H 1.09008 * 109.46714 * 299.99895 * 9 7 2 22 22 H 1.09001 * 113.78026 * 23.01152 * 11 10 9 23 23 H 1.08994 * 113.88653 * 251.57938 * 11 10 9 24 24 H 1.08995 * 113.78170 * 108.41947 * 13 10 9 25 25 H 1.09000 * 113.77865 * 336.98727 * 13 10 9 26 26 H 1.09001 * 109.50598 * 44.68912 * 14 12 11 27 27 H 1.09000 * 109.50559 * 164.82674 * 14 12 11 28 28 H 1.08998 * 109.47916 * 182.28441 * 15 14 12 29 29 H 1.09000 * 109.47588 * 62.25932 * 15 14 12 30 30 H 1.08995 * 109.43390 * 301.67877 * 16 15 14 31 31 H 1.09000 * 109.39802 * 181.79045 * 16 15 14 32 32 H 1.09000 * 109.47637 * 178.27495 * 17 16 15 33 33 H 1.08992 * 109.48536 * 58.24734 * 17 16 15 34 34 H 1.08998 * 109.50651 * 195.18426 * 18 12 11 35 35 H 1.08998 * 109.50682 * 315.30922 * 18 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0001 9 6 1.2510 -2.4992 -0.0017 10 7 2.2056 -3.6158 -0.0015 11 6 1.5159 -4.9033 -0.2425 12 6 2.6876 -5.2339 -1.1776 13 6 2.9011 -3.7193 -1.3043 14 6 2.2592 -5.9028 -2.4811 15 6 1.8922 -7.3633 -2.2023 16 6 3.0900 -8.0780 -1.5740 17 6 3.4427 -7.4176 -0.2401 18 6 3.8380 -5.9580 -0.4830 19 1 -0.4850 0.8401 -0.0004 20 1 0.6247 -2.5563 -0.8919 21 1 0.6240 -2.5575 0.8881 22 1 0.5598 -4.8005 -0.7556 23 1 1.4603 -5.5456 0.6364 24 1 3.9481 -3.4185 -1.2688 25 1 2.3547 -3.2661 -2.1315 26 1 1.3937 -5.3817 -2.8902 27 1 3.0803 -5.8640 -3.1969 28 1 1.6246 -7.8557 -3.1372 29 1 1.0459 -7.4008 -1.5164 30 1 3.9446 -8.0140 -2.2475 31 1 2.8390 -9.1252 -1.4051 32 1 4.2768 -7.9484 0.2190 33 1 2.5789 -7.4545 0.4235 34 1 4.7254 -5.9215 -1.1149 35 1 4.0494 -5.4745 0.4707 RHF calculation, no. of doubly occupied orbitals= 40 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086681349.mol2 35 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:02:36 Heat of formation + Delta-G solvation = -13.890741 kcal Electronic energy + Delta-G solvation = -14217.729426 eV Core-core repulsion = 12021.551542 eV Total energy + Delta-G solvation = -2196.177884 eV No. of doubly occupied orbitals = 40 Molecular weight (most abundant/longest-lived isotopes) = 209.148 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.59091 -37.44745 -34.97435 -31.79944 -31.70255 -28.77699 -27.00982 -25.61081 -23.67909 -22.59921 -21.28080 -19.08519 -18.51586 -16.98254 -16.45295 -16.21463 -15.47825 -15.36443 -14.78852 -14.47395 -14.15354 -14.04307 -13.50127 -13.05431 -12.96873 -12.83374 -12.80763 -12.37105 -12.26763 -11.99108 -11.89517 -11.59282 -11.25821 -10.95131 -10.90965 -10.69311 -10.65555 -9.44231 -8.26306 -6.37589 1.37004 1.39223 1.51129 2.36722 3.06174 3.30407 3.43005 3.79573 4.04437 4.22342 4.30580 4.37996 4.47010 4.60438 4.64576 4.68794 4.76539 4.81052 4.86220 4.93381 4.98590 5.08710 5.17380 5.20107 5.24226 5.32931 5.40205 5.46402 5.51423 5.63405 5.66350 5.77707 6.13912 6.45171 6.78137 7.32646 8.85674 Molecular weight = 209.15amu Principal moments of inertia in cm(-1) A = 0.065680 B = 0.006943 C = 0.006778 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 426.205190 B = 4032.037251 C = 4130.173007 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.935 5.935 2 C 0.001 3.999 3 Si 0.973 3.027 4 H -0.270 1.270 5 H -0.279 1.279 6 H -0.265 1.265 7 C -0.529 4.529 8 H 0.058 0.942 9 C 0.177 3.823 10 N -0.493 5.493 11 C 0.006 3.994 12 C -0.065 4.065 13 C 0.021 3.979 14 C -0.104 4.104 15 C -0.114 4.114 16 C -0.113 4.113 17 C -0.114 4.114 18 C -0.086 4.086 19 H 0.266 0.734 20 H -0.030 1.030 21 H -0.003 1.003 22 H 0.047 0.953 23 H 0.084 0.916 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.047 0.953 27 H 0.074 0.926 28 H 0.074 0.926 29 H 0.054 0.946 30 H 0.068 0.932 31 H 0.073 0.927 32 H 0.075 0.925 33 H 0.054 0.946 34 H 0.072 0.928 35 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.527 -14.789 -4.572 16.799 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.575 5.575 2 C -0.197 4.197 3 Si 0.797 3.203 4 H -0.195 1.195 5 H -0.204 1.204 6 H -0.190 1.190 7 C -0.567 4.567 8 H 0.077 0.923 9 C 0.050 3.950 10 N -0.215 5.215 11 C -0.123 4.123 12 C -0.065 4.065 13 C -0.108 4.108 14 C -0.141 4.141 15 C -0.151 4.151 16 C -0.150 4.150 17 C -0.152 4.152 18 C -0.123 4.123 19 H 0.075 0.925 20 H -0.013 1.013 21 H 0.015 0.985 22 H 0.066 0.934 23 H 0.103 0.897 24 H 0.094 0.906 25 H 0.064 0.936 26 H 0.066 0.934 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.073 0.927 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.094 0.906 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.738 -14.558 -3.948 16.520 hybrid contribution -0.801 1.372 -0.521 1.672 sum 5.937 -13.186 -4.469 15.136 Atomic orbital electron populations 1.70091 1.07816 1.28055 1.51514 1.25981 0.95822 1.03437 0.94508 0.85328 0.78485 0.77888 0.78601 1.19509 1.20400 1.18981 1.21404 0.93430 0.91300 1.50595 0.92330 1.19836 0.91158 0.90662 0.93387 1.68438 1.20673 1.01852 1.30572 1.23900 0.95998 0.93088 0.99291 1.21947 0.95712 0.93163 0.95712 1.23701 0.99730 0.95923 0.91476 1.21487 1.00736 0.96451 0.95472 1.21506 0.98425 0.94152 1.01054 1.21491 0.98010 0.99190 0.96348 1.21524 1.01402 0.94382 0.97882 1.21191 0.95851 0.95465 0.99796 0.92538 1.01278 0.98512 0.93444 0.89737 0.90606 0.93604 0.93441 0.90699 0.90763 0.92737 0.91349 0.90801 0.90649 0.92695 0.90904 0.92732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -58.07 13.29 21.45 0.28 -57.79 16 2 C 0.00 0.03 5.46 84.65 0.46 0.50 16 3 Si 0.97 45.54 29.54 68.60 2.03 47.57 16 4 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 5 H -0.28 -12.63 7.11 99.48 0.71 -11.92 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.53 -31.61 8.84 25.60 0.23 -31.38 16 8 H 0.06 3.45 7.80 -2.91 -0.02 3.42 16 9 C 0.18 10.05 4.58 85.56 0.39 10.44 16 10 N -0.49 -22.91 6.09 -918.39 -5.59 -28.50 16 11 C 0.01 0.23 6.73 86.25 0.58 0.81 16 12 C -0.06 -2.02 0.78 -52.06 -0.04 -2.06 16 13 C 0.02 0.83 6.59 86.24 0.57 1.40 16 14 C -0.10 -2.67 5.10 30.53 0.16 -2.51 16 15 C -0.11 -2.35 5.85 30.64 0.18 -2.17 16 16 C -0.11 -2.02 5.86 30.58 0.18 -1.84 16 17 C -0.11 -2.38 5.85 30.64 0.18 -2.21 16 18 C -0.09 -2.26 5.05 30.53 0.15 -2.10 16 19 H 0.27 15.41 8.31 -92.71 -0.77 14.64 16 20 H -0.03 -1.85 7.70 -2.39 -0.02 -1.87 16 21 H 0.00 -0.20 8.14 -2.38 -0.02 -0.22 16 22 H 0.05 1.87 7.70 -2.39 -0.02 1.86 16 23 H 0.08 2.95 7.45 -2.39 -0.02 2.93 16 24 H 0.08 2.95 8.09 -2.39 -0.02 2.93 16 25 H 0.05 1.99 7.73 -2.39 -0.02 1.97 16 26 H 0.05 1.35 8.09 -2.39 -0.02 1.33 16 27 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 28 H 0.07 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.05 1.21 8.00 -2.39 -0.02 1.19 16 30 H 0.07 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 33 H 0.05 1.23 7.47 -2.39 -0.02 1.21 16 34 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 35 H 0.05 1.66 8.01 -2.39 -0.02 1.64 16 Total: -1.00 -66.02 274.25 0.78 -65.24 By element: Atomic # 1 Polarization: 3.57 SS G_CDS: 1.02 Total: 4.60 kcal Atomic # 6 Polarization: -34.15 SS G_CDS: 3.04 Total: -31.11 kcal Atomic # 7 Polarization: -80.98 SS G_CDS: -5.30 Total: -86.28 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Total: -66.02 0.78 -65.24 kcal The number of atoms in the molecule is 35 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086681349.mol2 35 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.346 kcal (2) G-P(sol) polarization free energy of solvation -66.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.673 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.236 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.891 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds