Wall clock time and date at job start Sun Mar 29 2020 22:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.34947 * 126.03665 * 2 1 4 4 C 1.35316 * 107.74252 * 180.15010 * 3 2 1 5 5 C 1.50703 * 126.03817 * 179.87665 * 4 3 2 6 6 C 1.53004 * 109.46807 * 269.71087 * 5 4 3 7 7 N 1.46901 * 109.46916 * 179.97438 * 6 5 4 8 8 C 1.46905 * 110.99870 * 180.02562 * 7 6 5 9 9 C 1.50697 * 109.47066 * 180.02562 * 8 7 6 10 10 H 1.08000 * 120.00144 * 0.02562 * 9 8 7 11 11 C 1.37881 * 120.00103 * 179.97438 * 9 8 7 12 12 N 1.31510 * 119.99826 * 0.02562 * 11 9 8 13 13 Si 1.86796 * 120.00043 * 179.97438 * 11 9 8 14 14 H 1.48503 * 109.46586 * 90.00817 * 13 11 9 15 15 H 1.48496 * 109.47489 * 210.00373 * 13 11 9 16 16 H 1.48495 * 109.47395 * 330.00672 * 13 11 9 17 17 C 1.39863 * 107.92303 * 359.60929 * 4 3 2 18 18 N 1.30838 * 108.20144 * 0.24439 * 17 4 3 19 19 H 1.09004 * 109.46651 * 270.26180 * 1 2 3 20 20 H 1.09004 * 109.46896 * 30.25650 * 1 2 3 21 21 H 1.08997 * 109.47220 * 150.25919 * 1 2 3 22 22 H 1.08000 * 126.12742 * 359.97438 * 3 2 1 23 23 H 1.08995 * 109.47327 * 149.71775 * 5 4 3 24 24 H 1.08996 * 109.47062 * 29.70632 * 5 4 3 25 25 H 1.09004 * 109.46889 * 60.00274 * 6 5 4 26 26 H 1.08995 * 109.47384 * 299.99914 * 6 5 4 27 27 H 1.00901 * 111.00067 * 303.95263 * 7 6 5 28 28 H 1.09001 * 109.46798 * 300.00327 * 8 7 6 29 29 H 1.08998 * 109.46961 * 60.00043 * 8 7 6 30 30 H 0.96997 * 120.00392 * 179.97438 * 12 11 9 31 31 H 1.08003 * 125.90355 * 180.26330 * 17 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 -0.0034 5 6 4.7681 1.5452 -0.0072 6 6 5.1825 1.8359 -1.4511 7 7 6.3756 2.6930 -1.4549 8 6 6.8031 2.9941 -2.8277 9 6 8.0269 3.8727 -2.7914 10 1 8.4456 4.1766 -1.8434 11 6 8.6129 4.2877 -3.9685 12 7 8.1034 3.9172 -5.1229 13 14 10.1295 5.3773 -3.9235 14 1 11.3481 4.5288 -3.9061 15 1 10.1496 6.2477 -5.1265 16 1 10.0965 6.2214 -2.7023 17 6 3.5347 -0.7321 0.0036 18 7 2.2892 -1.1327 0.0055 19 1 -0.3633 0.0047 1.0277 20 1 -0.3633 0.8877 -0.5178 21 1 -0.3633 -0.8923 -0.5098 22 1 1.9282 2.1193 -0.0004 23 1 5.5821 1.0364 0.5089 24 1 4.5442 2.4824 0.5022 25 1 4.3684 2.3448 -1.9673 26 1 5.4064 0.8987 -1.9606 27 1 6.2133 3.5410 -0.9328 28 1 7.0384 2.0651 -3.3470 29 1 6.0000 3.5107 -3.3533 30 1 8.5153 4.2094 -5.9511 31 1 4.4054 -1.3711 0.0070 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087766606.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 22:00:26 Heat of formation + Delta-G solvation = 45.268287 kcal Electronic energy + Delta-G solvation = -12864.058522 eV Core-core repulsion = 10566.905622 eV Total energy + Delta-G solvation = -2297.152899 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -42.08634 -37.47230 -35.08034 -34.12697 -32.63304 -29.94330 -28.23163 -26.58725 -23.92490 -22.92732 -21.97819 -20.98111 -18.52899 -17.65283 -16.77980 -16.40249 -16.22898 -15.40512 -15.25999 -14.82422 -14.34032 -13.87264 -13.80989 -13.55136 -13.40301 -13.10883 -12.73642 -12.54655 -12.41380 -12.11928 -11.82894 -11.45219 -11.25359 -10.64307 -10.34051 -9.26691 -9.08030 -8.20703 -6.32454 0.96031 1.43497 1.45878 1.57089 1.72966 1.83998 2.42491 3.12551 3.60393 3.78820 4.03305 4.27337 4.38789 4.44820 4.54259 4.57829 4.68964 4.74495 4.88507 4.99327 5.10106 5.26199 5.31858 5.44424 5.64510 5.72724 6.04256 6.17685 6.48158 6.74301 6.76903 6.93965 7.38943 8.91171 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.081009 B = 0.004648 C = 0.004593 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 345.558935 B = 6022.398521 C = 6095.320383 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.093 3.907 2 N -0.384 5.384 3 C 0.059 3.941 4 C -0.248 4.248 5 C -0.020 4.020 6 C 0.070 3.930 7 N -0.689 5.689 8 C 0.206 3.794 9 C -0.536 4.536 10 H 0.068 0.932 11 C -0.001 4.001 12 N -0.937 5.937 13 Si 0.976 3.024 14 H -0.274 1.274 15 H -0.282 1.282 16 H -0.260 1.260 17 C 0.042 3.958 18 N -0.336 5.336 19 H 0.088 0.912 20 H 0.111 0.889 21 H 0.088 0.912 22 H 0.203 0.797 23 H 0.076 0.924 24 H 0.079 0.921 25 H 0.011 0.989 26 H 0.046 0.954 27 H 0.337 0.663 28 H -0.004 1.004 29 H -0.040 1.040 30 H 0.265 0.735 31 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.032 -4.142 11.282 18.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.046 4.046 2 N -0.166 5.166 3 C -0.088 4.088 4 C -0.260 4.260 5 C -0.059 4.059 6 C -0.060 4.060 7 N -0.320 5.320 8 C 0.078 3.922 9 C -0.574 4.574 10 H 0.086 0.914 11 C -0.199 4.199 12 N -0.577 5.577 13 Si 0.800 3.200 14 H -0.199 1.199 15 H -0.207 1.207 16 H -0.184 1.184 17 C -0.143 4.143 18 N -0.158 5.158 19 H 0.107 0.893 20 H 0.130 0.870 21 H 0.107 0.893 22 H 0.219 0.781 23 H 0.094 0.906 24 H 0.097 0.903 25 H 0.029 0.971 26 H 0.065 0.935 27 H 0.155 0.845 28 H 0.014 0.986 29 H -0.023 1.023 30 H 0.074 0.926 31 H 0.210 0.790 Dipole moment (debyes) X Y Z Total from point charges -14.561 -5.677 11.173 19.212 hybrid contribution 0.534 1.552 -0.858 1.852 sum -14.027 -4.125 10.315 17.893 Atomic orbital electron populations 1.22180 0.72037 1.05766 1.04645 1.48815 1.07946 1.03368 1.56475 1.22830 0.90561 0.94513 1.00913 1.20211 0.95120 0.93984 1.16669 1.19669 0.93439 0.98314 0.94511 1.21909 0.90140 0.96382 0.97563 1.60536 1.34125 1.21754 1.15551 1.19210 0.93722 0.93898 0.85340 1.21587 1.12258 1.30414 0.93148 0.91401 1.26007 1.01117 0.97972 0.94804 1.70102 1.42487 1.47022 0.98118 0.85282 0.78474 0.78282 0.77948 1.19907 1.20736 1.18426 1.24126 0.95428 0.95374 0.99378 1.77241 1.02357 1.09898 1.26326 0.89315 0.87019 0.89316 0.78070 0.90583 0.90292 0.97054 0.93519 0.84539 0.98634 1.02274 0.92633 0.79037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.15 11.47 127.77 1.47 2.61 16 2 N -0.38 -8.66 4.01 -369.54 -1.48 -10.14 16 3 C 0.06 1.30 11.40 83.54 0.95 2.25 16 4 C -0.25 -6.55 5.35 -20.14 -0.11 -6.66 16 5 C -0.02 -0.57 5.96 29.85 0.18 -0.39 16 6 C 0.07 2.55 5.67 86.30 0.49 3.04 16 7 N -0.69 -30.23 6.49 -517.92 -3.36 -33.59 16 8 C 0.21 11.42 5.44 85.55 0.47 11.89 16 9 C -0.54 -31.09 9.32 25.60 0.24 -30.85 16 10 H 0.07 3.78 7.81 -2.91 -0.02 3.76 16 11 C 0.00 -0.07 5.46 84.66 0.46 0.40 16 12 N -0.94 -57.65 13.29 21.45 0.28 -57.37 16 13 Si 0.98 44.54 29.54 68.60 2.03 46.57 16 14 H -0.27 -12.15 7.11 99.48 0.71 -11.44 16 15 H -0.28 -12.51 7.11 99.48 0.71 -11.81 16 16 H -0.26 -11.24 7.11 99.48 0.71 -10.53 16 17 C 0.04 1.15 11.96 85.23 1.02 2.17 16 18 N -0.34 -9.52 12.58 -57.02 -0.72 -10.24 16 19 H 0.09 0.81 8.14 -2.38 -0.02 0.79 16 20 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 21 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 22 H 0.20 3.03 8.06 -2.91 -0.02 3.00 16 23 H 0.08 2.12 8.14 -2.39 -0.02 2.10 16 24 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 25 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 26 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 27 H 0.34 13.62 8.72 -89.69 -0.78 12.84 16 28 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 29 H -0.04 -2.39 8.14 -2.39 -0.02 -2.41 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.46 16 31 H 0.19 4.51 8.06 -2.91 -0.02 4.48 16 Total: -1.00 -71.64 273.49 2.24 -69.41 By element: Atomic # 1 Polarization: 10.58 SS G_CDS: 0.32 Total: 10.90 kcal Atomic # 6 Polarization: -20.70 SS G_CDS: 5.16 Total: -15.54 kcal Atomic # 7 Polarization: -106.06 SS G_CDS: -5.28 Total: -111.34 kcal Atomic # 14 Polarization: 44.54 SS G_CDS: 2.03 Total: 46.57 kcal Total: -71.64 2.24 -69.41 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087766606.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 114.677 kcal (2) G-P(sol) polarization free energy of solvation -71.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.033 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.409 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.268 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds