Wall clock time and date at job start Sun Mar 29 2020 21:56:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 N 1.30503 * 125.64757 * 2 1 4 4 C 1.34132 * 109.25579 * 180.29064 * 3 2 1 5 5 C 1.34669 * 108.01768 * 359.73289 * 4 3 2 6 6 N 1.35042 * 125.65478 * 179.83106 * 2 1 3 7 7 C 1.46500 * 126.39313 * 359.97438 * 6 2 1 8 8 C 1.52997 * 109.47473 * 84.71557 * 7 6 2 9 9 N 1.46899 * 109.47254 * 179.97438 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 C 1.50696 * 109.46800 * 180.02562 * 10 9 8 12 12 H 1.08002 * 120.00575 * 0.02562 * 11 10 9 13 13 C 1.37880 * 119.99722 * 180.02562 * 11 10 9 14 14 N 1.31514 * 119.99976 * 179.97438 * 13 11 10 15 15 Si 1.86799 * 119.99994 * 0.02562 * 13 11 10 16 16 H 1.48497 * 109.47320 * 89.99788 * 15 13 11 17 17 H 1.48495 * 109.47173 * 210.00032 * 15 13 11 18 18 H 1.48509 * 109.47110 * 329.99889 * 15 13 11 19 19 H 1.09000 * 109.46880 * 270.17047 * 1 2 3 20 20 H 1.08998 * 109.47353 * 30.17154 * 1 2 3 21 21 H 1.08999 * 109.47119 * 150.17007 * 1 2 3 22 22 H 1.07998 * 125.98893 * 179.72468 * 4 3 2 23 23 H 1.07997 * 126.59117 * 179.97438 * 5 4 3 24 24 H 1.09002 * 109.47129 * 324.71300 * 7 6 2 25 25 H 1.08998 * 109.46845 * 204.72107 * 7 6 2 26 26 H 1.09002 * 109.47153 * 59.99757 * 8 7 6 27 27 H 1.09001 * 109.46832 * 299.99948 * 8 7 6 28 28 H 1.00902 * 111.00582 * 303.95797 * 9 8 7 29 29 H 1.08995 * 109.47167 * 300.00240 * 10 9 8 30 30 H 1.09003 * 109.46442 * 60.00214 * 10 9 8 31 31 H 0.97008 * 119.99801 * 179.97438 * 14 13 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6820 -0.0064 5 6 3.5926 -0.6642 -0.0046 6 7 2.2941 -1.0973 0.0032 7 6 1.8426 -2.4909 0.0079 8 6 1.5585 -2.9398 -1.4269 9 7 1.1063 -4.3375 -1.4223 10 6 0.8228 -4.8036 -2.7862 11 6 0.3621 -6.2377 -2.7413 12 1 0.2869 -6.7514 -1.7942 13 6 0.0364 -6.8941 -3.9093 14 7 -0.3652 -8.1458 -3.8702 15 14 0.1671 -6.0059 -5.5474 16 1 1.5278 -6.2011 -6.1092 17 1 -0.8409 -6.5545 -6.4897 18 1 -0.0817 -4.5558 -5.3455 19 1 -0.3633 0.0031 1.0277 20 1 -0.3634 0.8884 -0.5165 21 1 -0.3633 -0.8915 -0.5112 22 1 4.4097 1.3412 -0.0122 23 1 4.4776 -1.2831 -0.0089 24 1 0.9328 -2.5761 0.6021 25 1 2.6188 -3.1229 0.4394 26 1 2.4683 -2.8547 -2.0212 27 1 0.7822 -2.3078 -1.8583 28 1 1.7815 -4.9346 -0.9687 29 1 0.0410 -4.1848 -3.2265 30 1 1.7272 -4.7309 -3.3903 31 1 -0.5946 -8.6075 -4.6919 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000101224185.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:56:32 Heat of formation + Delta-G solvation = 34.363929 kcal Electronic energy + Delta-G solvation = -13202.879552 eV Core-core repulsion = 10905.253804 eV Total energy + Delta-G solvation = -2297.625748 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.02826 -37.78635 -35.33731 -34.16492 -32.61114 -30.70986 -28.09248 -27.46292 -23.96247 -23.07643 -22.29331 -20.62283 -19.01747 -17.97244 -17.12155 -16.40412 -16.29569 -15.52431 -15.34020 -14.80484 -14.42609 -14.33756 -14.12678 -13.85374 -13.61117 -13.20570 -13.02187 -12.77861 -12.42875 -12.29944 -11.85238 -11.54458 -10.96896 -10.84694 -10.59081 -9.33567 -9.27036 -8.32863 -6.37746 1.09018 1.32885 1.35182 1.45367 1.81120 2.16941 2.31094 3.01402 3.41821 3.63838 3.69677 3.93330 4.04680 4.31619 4.39132 4.48419 4.66381 4.70943 4.74145 4.78018 4.89270 4.99341 5.07736 5.39877 5.47597 5.82490 5.86013 6.24732 6.44337 6.56490 6.71708 7.14712 7.27395 8.83534 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.053816 B = 0.005792 C = 0.005737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 520.164290 B = 4833.037953 C = 4879.469772 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.192 3.808 3 N -0.533 5.533 4 C -0.053 4.053 5 C -0.058 4.058 6 N -0.454 5.454 7 C 0.114 3.886 8 C 0.050 3.950 9 N -0.679 5.679 10 C 0.175 3.825 11 C -0.529 4.529 12 H 0.043 0.957 13 C 0.011 3.989 14 N -0.945 5.945 15 Si 0.947 3.053 16 H -0.267 1.267 17 H -0.280 1.280 18 H -0.252 1.252 19 H 0.094 0.906 20 H 0.091 0.909 21 H 0.080 0.920 22 H 0.186 0.814 23 H 0.200 0.800 24 H 0.110 0.890 25 H 0.111 0.889 26 H 0.026 0.974 27 H 0.066 0.934 28 H 0.344 0.656 29 H 0.025 0.975 30 H -0.014 1.014 31 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.154 14.554 6.565 17.111 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.071 4.071 3 N -0.253 5.253 4 C -0.200 4.200 5 C -0.191 4.191 6 N -0.137 5.137 7 C -0.008 4.008 8 C -0.080 4.080 9 N -0.311 5.311 10 C 0.047 3.953 11 C -0.567 4.567 12 H 0.062 0.938 13 C -0.187 4.187 14 N -0.585 5.585 15 Si 0.770 3.230 16 H -0.192 1.192 17 H -0.206 1.206 18 H -0.176 1.176 19 H 0.112 0.888 20 H 0.110 0.890 21 H 0.099 0.901 22 H 0.203 0.797 23 H 0.217 0.783 24 H 0.128 0.872 25 H 0.129 0.871 26 H 0.044 0.956 27 H 0.085 0.915 28 H 0.162 0.838 29 H 0.043 0.957 30 H 0.004 0.996 31 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 5.114 15.228 6.604 17.368 hybrid contribution 1.235 -1.072 -1.175 2.014 sum 6.349 14.156 5.429 16.437 Atomic orbital electron populations 1.20313 0.83442 1.04547 1.04552 1.23834 0.96899 0.81451 1.04884 1.70212 1.03461 1.29590 1.22071 1.22695 0.94816 0.93798 1.08731 1.23216 0.87795 0.97008 1.11088 1.45555 1.06726 1.07685 1.53697 1.21840 1.03407 0.78154 0.97424 1.22189 0.98776 0.91080 0.95984 1.60286 1.49196 1.01798 1.19820 1.19753 0.94510 0.94310 0.86749 1.21305 1.44753 0.96558 0.94130 0.93847 1.25822 0.94213 0.95416 1.03217 1.70039 1.46743 1.12216 1.29475 0.85722 0.78568 0.79793 0.78873 1.19229 1.20588 1.17603 0.88757 0.89011 0.90072 0.79663 0.78330 0.87160 0.87060 0.95595 0.91517 0.83836 0.95651 0.99630 0.92270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.41 10.04 71.24 0.72 -0.69 16 2 C 0.19 5.02 7.90 138.13 1.09 6.11 16 3 N -0.53 -15.71 11.25 -188.13 -2.12 -17.83 16 4 C -0.05 -1.32 11.87 83.52 0.99 -0.33 16 5 C -0.06 -1.29 11.58 83.09 0.96 -0.33 16 6 N -0.45 -10.82 2.75 -514.30 -1.41 -12.24 16 7 C 0.11 2.48 5.94 86.38 0.51 3.00 16 8 C 0.05 1.43 6.01 86.30 0.52 1.94 16 9 N -0.68 -24.68 6.49 -517.93 -3.36 -28.04 16 10 C 0.18 7.96 4.51 85.55 0.39 8.35 16 11 C -0.53 -29.55 9.87 25.60 0.25 -29.30 16 12 H 0.04 2.67 8.06 -2.91 -0.02 2.65 16 13 C 0.01 0.65 5.47 84.66 0.46 1.11 16 14 N -0.94 -57.74 13.96 21.45 0.30 -57.44 16 15 Si 0.95 43.04 27.47 68.60 1.88 44.92 16 16 H -0.27 -11.67 7.11 99.48 0.71 -10.96 16 17 H -0.28 -12.50 7.11 99.48 0.71 -11.80 16 18 H -0.25 -10.76 6.54 99.48 0.65 -10.11 16 19 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 20 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 21 H 0.08 1.58 7.34 -2.39 -0.02 1.56 16 22 H 0.19 3.53 8.06 -2.91 -0.02 3.51 16 23 H 0.20 3.05 8.06 -2.91 -0.02 3.03 16 24 H 0.11 2.26 7.94 -2.39 -0.02 2.24 16 25 H 0.11 2.01 8.14 -2.39 -0.02 1.99 16 26 H 0.03 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.07 1.99 7.64 -2.39 -0.02 1.97 16 28 H 0.34 11.77 8.72 -89.69 -0.78 10.99 16 29 H 0.03 1.17 7.20 -2.39 -0.02 1.16 16 30 H -0.01 -0.62 7.57 -2.39 -0.02 -0.64 16 31 H 0.27 15.27 8.31 -92.70 -0.77 14.50 16 Total: -1.00 -68.12 267.30 1.46 -66.66 By element: Atomic # 1 Polarization: 13.82 SS G_CDS: 0.27 Total: 14.10 kcal Atomic # 6 Polarization: -16.03 SS G_CDS: 5.89 Total: -10.13 kcal Atomic # 7 Polarization: -108.95 SS G_CDS: -6.59 Total: -115.55 kcal Atomic # 14 Polarization: 43.04 SS G_CDS: 1.88 Total: 44.92 kcal Total: -68.12 1.46 -66.66 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000101224185.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.028 kcal (2) G-P(sol) polarization free energy of solvation -68.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.907 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.664 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds