Wall clock time and date at job start Sun Mar 29 2020 21:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47042 * 2 1 4 4 C 1.46893 * 110.99844 * 199.75849 * 3 2 1 5 5 C 1.50702 * 109.47710 * 66.04301 * 4 3 2 6 6 H 1.08000 * 119.99442 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00409 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00291 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47374 * 89.99303 * 9 7 5 11 11 H 1.48498 * 109.47480 * 210.00021 * 9 7 5 12 12 H 1.48505 * 109.46786 * 329.99756 * 9 7 5 13 13 C 1.46903 * 111.00268 * 75.80015 * 3 2 1 14 14 C 1.50697 * 109.46889 * 199.69766 * 13 3 2 15 15 C 1.41385 * 126.57850 * 84.65627 * 14 13 3 16 16 C 1.34516 * 106.84337 * 180.02562 * 15 14 13 17 17 O 1.34303 * 108.41517 * 359.97438 * 16 15 14 18 18 C 1.34305 * 109.48136 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.47598 * 174.85737 * 1 2 3 20 20 H 1.09006 * 109.47114 * 294.85115 * 1 2 3 21 21 H 1.09000 * 109.47586 * 54.84941 * 1 2 3 22 22 H 1.08993 * 109.47042 * 239.99733 * 2 1 3 23 23 H 1.09004 * 109.47146 * 119.99265 * 2 1 3 24 24 H 1.09009 * 109.47291 * 186.04568 * 4 3 2 25 25 H 1.08999 * 109.47299 * 306.03758 * 4 3 2 26 26 H 0.96996 * 120.00336 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.46656 * 79.69787 * 13 3 2 28 28 H 1.09001 * 109.46824 * 319.70268 * 13 3 2 29 29 H 1.08003 * 126.57686 * 359.76905 * 15 14 13 30 30 H 1.07996 * 125.78742 * 180.02562 * 16 15 14 31 31 H 1.07997 * 125.78778 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4636 5 6 3.4783 1.0473 -1.9140 6 1 2.5763 0.7690 -2.4388 7 6 4.6903 1.0333 -2.5710 8 7 4.7482 0.6804 -3.8366 9 14 6.2505 1.5139 -1.6631 10 1 6.8541 0.3072 -1.0429 11 1 7.2150 2.1139 -2.6196 12 1 5.9226 2.5029 -0.6049 13 6 1.8779 1.9935 1.3295 14 6 1.9189 3.4945 1.2018 15 6 0.8307 4.3442 0.8971 16 6 1.3098 5.6011 0.8826 17 8 2.6229 5.5579 1.1614 18 6 2.9976 4.2831 1.3568 19 1 -0.3634 -1.0235 -0.0921 20 1 -0.3634 0.4319 0.9326 21 1 -0.3634 0.5916 -0.8402 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 3.7839 2.4697 -0.3526 25 1 4.0253 0.7737 0.1305 26 1 5.6010 0.6702 -4.2987 27 1 2.6946 1.6609 1.9702 28 1 0.9265 1.6919 1.7676 29 1 -0.1886 4.0417 0.7078 30 1 0.7357 6.4935 0.6817 31 1 3.9958 3.9479 1.5969 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112204733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:32 Heat of formation + Delta-G solvation = 19.102071 kcal Electronic energy + Delta-G solvation = -13803.512343 eV Core-core repulsion = 11472.932041 eV Total energy + Delta-G solvation = -2330.580303 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -42.14108 -37.14423 -33.08086 -32.43711 -30.35559 -29.29819 -27.54995 -24.68542 -22.13110 -21.20955 -20.39011 -19.50899 -17.12677 -16.73409 -15.59404 -14.94808 -14.56050 -14.24849 -13.92775 -13.47132 -12.90049 -12.45034 -12.42794 -12.32636 -11.74039 -11.40973 -11.12135 -11.05237 -10.71187 -10.39042 -10.06298 -9.81210 -9.30012 -9.17474 -8.55865 -8.16515 -7.34317 -6.03184 -3.99624 2.14153 2.99714 3.28233 3.36199 3.37092 3.50083 4.43263 4.93158 5.11613 5.28603 5.34445 5.45090 5.68749 5.80795 5.91283 5.97969 6.09822 6.14413 6.35240 6.42201 6.52155 6.69618 6.73251 6.87381 6.93849 7.02494 7.48271 7.65364 7.96109 8.10883 8.69221 9.05900 9.58944 11.10114 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.011808 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.276984 B = 2370.796143 C = 3135.965058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.054 3.946 3 N -0.522 5.522 4 C 0.161 3.839 5 C -0.506 4.506 6 H 0.081 0.919 7 C 0.068 3.932 8 N -0.901 5.901 9 Si 0.874 3.126 10 H -0.278 1.278 11 H -0.286 1.286 12 H -0.268 1.268 13 C 0.117 3.883 14 C -0.154 4.154 15 C -0.189 4.189 16 C -0.058 4.058 17 O -0.182 6.182 18 C -0.041 4.041 19 H 0.048 0.952 20 H 0.042 0.958 21 H 0.061 0.939 22 H 0.091 0.909 23 H 0.018 0.982 24 H 0.030 0.970 25 H -0.019 1.019 26 H 0.263 0.737 27 H 0.031 0.969 28 H 0.073 0.927 29 H 0.144 0.856 30 H 0.197 0.803 31 H 0.195 0.805 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.980 4.968 11.286 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.074 4.074 3 N -0.247 5.247 4 C 0.034 3.966 5 C -0.544 4.544 6 H 0.099 0.901 7 C -0.134 4.134 8 N -0.540 5.540 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.212 1.212 12 H -0.192 1.192 13 C -0.011 4.011 14 C -0.156 4.156 15 C -0.209 4.209 16 C -0.125 4.125 17 O -0.078 6.078 18 C -0.110 4.110 19 H 0.067 0.933 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.110 0.890 23 H 0.036 0.964 24 H 0.048 0.952 25 H -0.001 1.001 26 H 0.073 0.927 27 H 0.049 0.951 28 H 0.091 0.909 29 H 0.162 0.838 30 H 0.213 0.787 31 H 0.212 0.788 Dipole moment (debyes) X Y Z Total from point charges -5.950 5.445 10.817 13.493 hybrid contribution 1.313 -0.366 0.784 1.572 sum -4.637 5.079 11.600 13.486 Atomic orbital electron populations 1.21779 0.96389 1.00455 1.01389 1.22020 0.94539 0.89648 1.01162 1.61926 1.23937 1.17097 1.21693 1.20213 0.83756 0.96106 0.96491 1.21040 0.95350 1.44532 0.93484 0.90138 1.24894 0.98698 0.95026 0.94753 1.69892 1.25755 1.48786 1.09609 0.86877 0.83789 0.79155 0.80012 1.20393 1.21165 1.19243 1.20414 1.00294 0.88765 0.91635 1.20365 0.93151 0.96631 1.05417 1.21637 1.00457 0.92344 1.06453 1.23869 0.81889 0.99692 1.07080 1.84014 1.25297 1.29536 1.68977 1.23815 0.99883 0.80479 1.06789 0.93264 0.93943 0.91988 0.89042 0.96389 0.95168 1.00133 0.92721 0.95057 0.90866 0.83843 0.78668 0.78848 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.26 9.96 37.16 0.37 -1.89 16 2 C 0.05 1.04 5.51 -3.82 -0.02 1.02 16 3 N -0.52 -11.10 4.34 -237.52 -1.03 -12.13 16 4 C 0.16 3.95 3.61 -4.98 -0.02 3.93 16 5 C -0.51 -14.54 8.79 -34.44 -0.30 -14.84 16 6 H 0.08 2.52 7.56 -52.49 -0.40 2.12 16 7 C 0.07 1.98 5.47 -17.82 -0.10 1.88 16 8 N -0.90 -27.88 13.96 55.43 0.77 -27.10 16 9 Si 0.87 21.73 27.47 -169.99 -4.67 17.06 16 10 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 12 H -0.27 -6.35 6.54 56.52 0.37 -5.98 16 13 C 0.12 2.07 5.33 -4.98 -0.03 2.05 16 14 C -0.15 -2.70 5.21 -104.75 -0.55 -3.24 16 15 C -0.19 -2.98 10.87 -39.70 -0.43 -3.41 16 16 C -0.06 -0.83 12.09 29.42 0.36 -0.47 16 17 O -0.18 -2.98 10.65 5.70 0.06 -2.92 16 18 C -0.04 -0.70 11.04 29.41 0.32 -0.38 16 19 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 20 H 0.04 0.60 6.90 -51.93 -0.36 0.24 16 21 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 22 H 0.09 2.00 6.58 -51.93 -0.34 1.66 16 23 H 0.02 0.32 8.00 -51.93 -0.42 -0.09 16 24 H 0.03 0.76 5.72 -51.92 -0.30 0.46 16 25 H -0.02 -0.46 7.55 -51.93 -0.39 -0.86 16 26 H 0.26 7.62 8.31 -40.82 -0.34 7.28 16 27 H 0.03 0.54 8.00 -51.93 -0.42 0.12 16 28 H 0.07 1.15 6.56 -51.93 -0.34 0.81 16 29 H 0.14 2.01 8.06 -52.48 -0.42 1.59 16 30 H 0.20 1.94 8.06 -52.49 -0.42 1.51 16 31 H 0.19 2.92 8.06 -52.49 -0.42 2.50 16 LS Contribution 260.67 15.07 3.93 3.93 Total: -1.00 -31.72 260.67 -5.57 -37.29 By element: Atomic # 1 Polarization: 3.47 SS G_CDS: -4.24 Total: -0.77 kcal Atomic # 6 Polarization: -14.97 SS G_CDS: -0.39 Total: -15.36 kcal Atomic # 7 Polarization: -38.97 SS G_CDS: -0.26 Total: -39.23 kcal Atomic # 8 Polarization: -2.98 SS G_CDS: 0.06 Total: -2.92 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -4.67 Total: 17.06 kcal Total LS contribution 3.93 Total: 3.93 kcal Total: -31.72 -5.57 -37.29 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.389 kcal (2) G-P(sol) polarization free energy of solvation -31.719 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.671 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.569 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds