Wall clock time and date at job start Sun Mar 29 2020 21:53:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46901 * 109.47042 * 2 1 4 4 C 1.46893 * 110.99844 * 199.75849 * 3 2 1 5 5 C 1.50702 * 109.47710 * 66.04301 * 4 3 2 6 6 H 1.08000 * 119.99442 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00409 * 179.97438 * 5 4 3 8 8 N 1.31514 * 120.00291 * 179.97438 * 7 5 4 9 9 Si 1.86803 * 120.00210 * 0.02562 * 7 5 4 10 10 H 1.48495 * 109.47374 * 89.99303 * 9 7 5 11 11 H 1.48498 * 109.47480 * 210.00021 * 9 7 5 12 12 H 1.48505 * 109.46786 * 329.99756 * 9 7 5 13 13 C 1.46903 * 111.00268 * 75.80015 * 3 2 1 14 14 C 1.50697 * 109.46889 * 199.69766 * 13 3 2 15 15 C 1.41385 * 126.57850 * 84.65627 * 14 13 3 16 16 C 1.34516 * 106.84337 * 180.02562 * 15 14 13 17 17 O 1.34303 * 108.41517 * 359.97438 * 16 15 14 18 18 C 1.34305 * 109.48136 * 359.97438 * 17 16 15 19 19 H 1.08999 * 109.47598 * 174.85737 * 1 2 3 20 20 H 1.09006 * 109.47114 * 294.85115 * 1 2 3 21 21 H 1.09000 * 109.47586 * 54.84941 * 1 2 3 22 22 H 1.08993 * 109.47042 * 239.99733 * 2 1 3 23 23 H 1.09004 * 109.47146 * 119.99265 * 2 1 3 24 24 H 1.09009 * 109.47291 * 186.04568 * 4 3 2 25 25 H 1.08999 * 109.47299 * 306.03758 * 4 3 2 26 26 H 0.96996 * 120.00336 * 180.02562 * 8 7 5 27 27 H 1.08997 * 109.46656 * 79.69787 * 13 3 2 28 28 H 1.09001 * 109.46824 * 319.70268 * 13 3 2 29 29 H 1.08003 * 126.57686 * 359.76905 * 15 14 13 30 30 H 1.07996 * 125.78742 * 180.02562 * 16 15 14 31 31 H 1.07997 * 125.78778 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 3.4119 1.4511 -0.4636 5 6 3.4783 1.0473 -1.9140 6 1 2.5763 0.7690 -2.4388 7 6 4.6903 1.0333 -2.5710 8 7 4.7482 0.6804 -3.8366 9 14 6.2505 1.5139 -1.6631 10 1 6.8541 0.3072 -1.0429 11 1 7.2150 2.1139 -2.6196 12 1 5.9226 2.5029 -0.6049 13 6 1.8779 1.9935 1.3295 14 6 1.9189 3.4945 1.2018 15 6 0.8307 4.3442 0.8971 16 6 1.3098 5.6011 0.8826 17 8 2.6229 5.5579 1.1614 18 6 2.9976 4.2831 1.3568 19 1 -0.3634 -1.0235 -0.0921 20 1 -0.3634 0.4319 0.9326 21 1 -0.3634 0.5916 -0.8402 22 1 1.8933 -0.5138 -0.8899 23 1 1.8933 -0.5137 0.8901 24 1 3.7839 2.4697 -0.3526 25 1 4.0253 0.7737 0.1305 26 1 5.6010 0.6702 -4.2987 27 1 2.6946 1.6609 1.9702 28 1 0.9265 1.6919 1.7676 29 1 -0.1886 4.0417 0.7078 30 1 0.7357 6.4935 0.6817 31 1 3.9958 3.9479 1.5969 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000112204733.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:53:32 Heat of formation + Delta-G solvation = -2.678406 kcal Electronic energy + Delta-G solvation = -13804.456816 eV Core-core repulsion = 11472.932041 eV Total energy + Delta-G solvation = -2331.524775 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -43.34359 -38.75055 -34.84586 -34.13739 -31.85897 -30.74334 -29.20574 -26.26924 -23.93715 -22.41316 -21.87236 -20.93375 -18.99629 -18.26356 -16.87096 -16.73746 -16.04959 -15.79034 -15.48234 -15.00818 -14.59810 -14.23422 -13.93413 -13.58041 -13.20720 -12.87462 -12.75806 -12.63089 -12.44317 -12.01216 -11.84111 -11.58645 -11.37374 -10.78819 -10.51205 -9.38298 -8.97635 -8.28203 -6.30567 0.94422 1.32135 1.34677 1.44988 1.76098 2.33647 2.37027 3.05096 3.39830 3.99130 4.07389 4.19687 4.27220 4.52372 4.57436 4.61499 4.73711 4.86279 4.92704 5.01022 5.07199 5.20599 5.29827 5.36075 5.43953 5.57163 5.68021 6.02312 6.27615 6.44327 6.68390 6.75755 7.32597 8.88587 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.024147 B = 0.011808 C = 0.008927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1159.276984 B = 2370.796143 C = 3135.965058 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.053 3.947 3 N -0.539 5.539 4 C 0.173 3.827 5 C -0.512 4.512 6 H 0.036 0.964 7 C 0.006 3.994 8 N -0.949 5.949 9 Si 0.944 3.056 10 H -0.266 1.266 11 H -0.283 1.283 12 H -0.247 1.247 13 C 0.120 3.880 14 C -0.177 4.177 15 C -0.212 4.212 16 C -0.046 4.046 17 O -0.191 6.191 18 C -0.057 4.057 19 H 0.069 0.931 20 H 0.065 0.935 21 H 0.044 0.956 22 H 0.052 0.948 23 H 0.035 0.965 24 H 0.029 0.971 25 H -0.016 1.016 26 H 0.266 0.734 27 H 0.039 0.961 28 H 0.095 0.905 29 H 0.157 0.843 30 H 0.238 0.762 31 H 0.206 0.794 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.032 5.979 13.314 15.792 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.264 5.264 4 C 0.046 3.954 5 C -0.551 4.551 6 H 0.054 0.946 7 C -0.191 4.191 8 N -0.590 5.590 9 Si 0.767 3.233 10 H -0.191 1.191 11 H -0.208 1.208 12 H -0.171 1.171 13 C -0.008 4.008 14 C -0.179 4.179 15 C -0.231 4.231 16 C -0.113 4.113 17 O -0.087 6.087 18 C -0.125 4.125 19 H 0.088 0.912 20 H 0.084 0.916 21 H 0.064 0.936 22 H 0.071 0.929 23 H 0.053 0.947 24 H 0.047 0.953 25 H 0.002 0.998 26 H 0.075 0.925 27 H 0.057 0.943 28 H 0.113 0.887 29 H 0.174 0.826 30 H 0.254 0.746 31 H 0.222 0.778 Dipole moment (debyes) X Y Z Total from point charges -6.027 6.454 12.868 15.607 hybrid contribution 1.205 -0.687 0.114 1.392 sum -4.822 5.767 12.982 15.001 Atomic orbital electron populations 1.21685 0.93600 1.01776 1.01852 1.22023 0.96818 0.88637 1.00017 1.61846 1.21721 1.18386 1.24410 1.19927 0.86125 0.95594 0.93767 1.21269 0.93928 1.44186 0.95676 0.94578 1.25842 1.02685 0.94965 0.95567 1.70050 1.26928 1.50424 1.11614 0.85759 0.78770 0.79625 0.79107 1.19139 1.20818 1.17075 1.20465 1.01705 0.88893 0.89697 1.20566 0.94213 0.96688 1.06384 1.21917 1.00930 0.92833 1.07456 1.24690 0.81120 1.00828 1.04650 1.84025 1.26387 1.29298 1.69022 1.24098 1.00453 0.80765 1.07157 0.91171 0.91634 0.93645 0.92919 0.94693 0.95268 0.99834 0.92515 0.94305 0.88708 0.82559 0.74553 0.77769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.96 71.98 0.72 -3.25 16 2 C 0.05 2.01 5.51 86.30 0.48 2.48 16 3 N -0.54 -22.53 4.34 -905.38 -3.93 -26.46 16 4 C 0.17 8.43 3.61 85.56 0.31 8.74 16 5 C -0.51 -30.23 8.79 25.60 0.22 -30.01 16 6 H 0.04 2.38 7.56 -2.91 -0.02 2.36 16 7 C 0.01 0.38 5.47 84.65 0.46 0.84 16 8 N -0.95 -60.32 13.96 21.44 0.30 -60.02 16 9 Si 0.94 44.57 27.47 68.60 1.88 46.45 16 10 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 11 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 12 H -0.25 -10.77 6.54 99.48 0.65 -10.11 16 13 C 0.12 4.00 5.33 85.56 0.46 4.45 16 14 C -0.18 -5.86 5.21 -19.94 -0.10 -5.97 16 15 C -0.21 -6.21 10.87 22.19 0.24 -5.97 16 16 C -0.05 -1.19 12.09 66.97 0.81 -0.38 16 17 O -0.19 -5.83 10.65 -2.51 -0.03 -5.86 16 18 C -0.06 -1.81 11.04 66.97 0.74 -1.08 16 19 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 20 H 0.06 1.67 6.90 -2.38 -0.02 1.66 16 21 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 22 H 0.05 2.39 6.58 -2.39 -0.02 2.37 16 23 H 0.03 1.20 8.00 -2.38 -0.02 1.18 16 24 H 0.03 1.43 5.72 -2.38 -0.01 1.42 16 25 H -0.02 -0.76 7.55 -2.39 -0.02 -0.78 16 26 H 0.27 15.75 8.31 -92.71 -0.77 14.98 16 27 H 0.04 1.24 8.00 -2.39 -0.02 1.22 16 28 H 0.09 2.71 6.56 -2.39 -0.02 2.70 16 29 H 0.16 4.02 8.06 -2.91 -0.02 4.00 16 30 H 0.24 3.73 8.06 -2.91 -0.02 3.71 16 31 H 0.21 5.79 8.06 -2.91 -0.02 5.77 16 Total: -1.00 -69.60 260.67 3.60 -66.00 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: 1.05 Total: 10.02 kcal Atomic # 6 Polarization: -34.46 SS G_CDS: 4.33 Total: -30.13 kcal Atomic # 7 Polarization: -82.85 SS G_CDS: -3.63 Total: -86.49 kcal Atomic # 8 Polarization: -5.83 SS G_CDS: -0.03 Total: -5.86 kcal Atomic # 14 Polarization: 44.57 SS G_CDS: 1.88 Total: 46.45 kcal Total: -69.60 3.60 -66.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112204733.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.322 kcal (2) G-P(sol) polarization free energy of solvation -69.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.678 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds