Wall clock time and date at job start Sun Mar 29 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47081 * 2 1 4 4 C 1.50693 * 109.47424 * 120.00427 * 2 1 3 5 5 H 1.08001 * 120.00156 * 114.36298 * 4 2 1 6 6 C 1.37883 * 119.99975 * 294.35995 * 4 2 1 7 7 N 1.31514 * 119.99792 * 156.55708 * 6 4 2 8 8 Si 1.86795 * 120.00000 * 336.83419 * 6 4 2 9 9 H 1.48494 * 109.47243 * 179.72421 * 8 6 4 10 10 H 1.48501 * 109.46953 * 299.72341 * 8 6 4 11 11 H 1.48500 * 109.47267 * 59.72084 * 8 6 4 12 12 N 1.46904 * 109.46945 * 240.00336 * 2 1 3 13 13 C 1.46904 * 111.00152 * 84.99616 * 12 2 1 14 14 C 1.50701 * 109.47201 * 180.02562 * 13 12 2 15 15 C 1.39867 * 125.89533 * 94.71612 * 14 13 12 16 16 C 1.35318 * 107.91541 * 179.86296 * 15 14 13 17 17 N 1.34946 * 107.74890 * 0.39473 * 16 15 14 18 18 C 1.46502 * 126.04064 * 179.74723 * 17 16 15 19 19 N 1.30842 * 125.89693 * 275.02577 * 14 13 12 20 20 H 1.08996 * 109.47340 * 53.06482 * 1 2 3 21 21 H 1.09000 * 109.46855 * 173.06646 * 1 2 3 22 22 H 1.08997 * 109.46527 * 293.06430 * 1 2 3 23 23 H 0.96996 * 119.99955 * 355.20631 * 7 6 4 24 24 H 1.00892 * 111.00201 * 208.95025 * 12 2 1 25 25 H 1.08999 * 109.46981 * 300.00553 * 13 12 2 26 26 H 1.09000 * 109.46851 * 60.00077 * 13 12 2 27 27 H 1.07997 * 126.04465 * 359.97438 * 15 14 13 28 28 H 1.08004 * 126.12646 * 180.14770 * 16 15 14 29 29 H 1.09000 * 109.47133 * 269.98071 * 18 17 16 30 30 H 1.09005 * 109.46566 * 29.97763 * 18 17 16 31 31 H 1.09001 * 109.47105 * 149.97397 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7979 -0.1756 2.4794 7 7 1.8017 -0.9541 3.5393 8 14 1.4670 1.6534 2.6650 9 1 1.2409 1.9727 4.0975 10 1 2.6359 2.4211 2.1653 11 1 0.2613 2.0206 1.8798 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2227 -2.3470 14 6 2.5872 -0.5217 -3.5562 15 6 1.7943 -1.1213 -4.5401 16 6 2.6190 -1.6827 -5.4543 17 7 3.8886 -1.4543 -5.0581 18 6 5.1009 -1.8930 -5.7540 19 7 3.8428 -0.7235 -3.8639 20 1 -0.3634 0.6175 -0.8214 21 1 -0.3633 -1.0202 -0.1241 22 1 -0.3632 0.4026 0.9455 23 1 1.9002 -1.9135 3.4360 24 1 2.9172 -1.1204 -1.0289 25 1 1.0869 0.6164 -2.5525 26 1 2.7587 1.0463 -2.1183 27 1 0.7147 -1.1326 -4.5666 28 1 2.3155 -2.2210 -6.3401 29 1 5.3922 -2.8784 -5.3902 30 1 4.9064 -1.9441 -6.8253 31 1 5.9059 -1.1830 -5.5643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124751354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:25 Heat of formation + Delta-G solvation = 77.425020 kcal Electronic energy + Delta-G solvation = -13340.885796 eV Core-core repulsion = 11045.127317 eV Total energy + Delta-G solvation = -2295.758479 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.94347 -36.14610 -33.54771 -32.18198 -30.10415 -29.40605 -26.84749 -24.91005 -23.67733 -20.97419 -19.58369 -19.47567 -17.50456 -16.77554 -15.38248 -14.80448 -14.27675 -14.16305 -13.69306 -13.40763 -12.86615 -12.58744 -12.52887 -11.96742 -11.80400 -11.71319 -11.06369 -10.78517 -10.42051 -10.33144 -9.95753 -9.72761 -9.10452 -8.89867 -8.38988 -8.16404 -7.43019 -6.43449 -4.01392 2.03345 2.63859 3.02004 3.44247 3.47415 3.65327 4.54380 4.54474 4.86643 5.04402 5.10699 5.25004 5.28899 5.48462 5.54068 5.91027 6.07983 6.12381 6.32020 6.51160 6.76666 6.85871 6.86643 6.98794 7.13995 7.53985 7.80145 7.93943 8.20077 8.44046 8.54965 9.00591 9.64254 10.94129 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055885 B = 0.006554 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.912713 B = 4271.017967 C = 4394.549742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.190 3.810 3 H -0.006 1.006 4 C -0.610 4.610 5 H 0.060 0.940 6 C 0.038 3.962 7 N -0.898 5.898 8 Si 1.038 2.962 9 H -0.285 1.285 10 H -0.285 1.285 11 H -0.276 1.276 12 N -0.673 5.673 13 C 0.135 3.865 14 C 0.091 3.909 15 C -0.253 4.253 16 C 0.042 3.958 17 N -0.384 5.384 18 C 0.105 3.895 19 N -0.296 5.296 20 H 0.018 0.982 21 H 0.050 0.950 22 H 0.048 0.952 23 H 0.269 0.731 24 H 0.340 0.660 25 H 0.083 0.917 26 H 0.036 0.964 27 H 0.146 0.854 28 H 0.170 0.830 29 H 0.071 0.929 30 H 0.083 0.917 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.982 0.425 -18.282 18.394 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C 0.081 3.919 3 H 0.012 0.988 4 C -0.648 4.648 5 H 0.079 0.921 6 C -0.168 4.168 7 N -0.531 5.531 8 Si 0.866 3.134 9 H -0.211 1.211 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.306 5.306 13 C 0.003 3.997 14 C -0.076 4.076 15 C -0.283 4.283 16 C -0.104 4.104 17 N -0.167 5.167 18 C -0.037 4.037 19 N -0.119 5.119 20 H 0.037 0.963 21 H 0.069 0.931 22 H 0.067 0.933 23 H 0.079 0.921 24 H 0.158 0.842 25 H 0.102 0.898 26 H 0.054 0.946 27 H 0.164 0.836 28 H 0.187 0.813 29 H 0.090 0.910 30 H 0.101 0.899 31 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 2.443 1.496 -17.065 17.304 hybrid contribution 0.244 -1.023 -1.311 1.680 sum 2.688 0.474 -18.375 18.577 Atomic orbital electron populations 1.22053 0.98243 1.00205 0.98583 1.19422 0.92145 0.92365 0.87927 0.98829 1.22027 1.40887 1.10800 0.91097 0.92148 1.25670 0.93342 1.05751 0.92034 1.70838 1.43903 1.06366 1.31998 0.84121 0.77202 0.76042 0.76024 1.21088 1.21170 1.20211 1.60618 1.33090 1.32140 1.04723 1.20335 0.99520 0.92771 0.87053 1.22466 0.90157 0.97991 0.96951 1.21403 1.00618 1.08830 0.97428 1.22449 0.84556 1.02352 1.00997 1.48476 1.05531 1.43475 1.19223 1.21764 0.85232 1.00878 0.95802 1.77359 1.20560 1.15318 0.98627 0.96269 0.93130 0.93289 0.92066 0.84221 0.89832 0.94626 0.83601 0.81311 0.91034 0.89876 0.89561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.07 9.09 37.16 0.34 -2.73 16 2 C 0.19 4.72 2.20 -68.87 -0.15 4.57 16 3 H -0.01 -0.14 6.37 -51.93 -0.33 -0.47 16 4 C -0.61 -17.60 8.77 -34.44 -0.30 -17.90 16 5 H 0.06 1.88 7.92 -52.49 -0.42 1.47 16 6 C 0.04 1.12 5.19 -17.82 -0.09 1.03 16 7 N -0.90 -27.85 13.70 55.43 0.76 -27.09 16 8 Si 1.04 25.53 26.45 -169.99 -4.50 21.04 16 9 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 10 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 11 H -0.28 -6.31 6.15 56.52 0.35 -5.96 16 12 N -0.67 -15.08 6.29 -109.22 -0.69 -15.77 16 13 C 0.13 2.55 6.04 -4.97 -0.03 2.52 16 14 C 0.09 1.62 6.73 -82.40 -0.55 1.07 16 15 C -0.25 -3.80 10.74 -40.01 -0.43 -4.23 16 16 C 0.04 0.52 11.49 -17.22 -0.20 0.32 16 17 N -0.38 -5.31 4.01 -68.16 -0.27 -5.59 16 18 C 0.10 0.91 11.47 59.85 0.69 1.59 16 19 N -0.30 -5.28 12.58 33.67 0.42 -4.86 16 20 H 0.02 0.38 7.64 -51.93 -0.40 -0.02 16 21 H 0.05 1.18 8.14 -51.93 -0.42 0.76 16 22 H 0.05 1.16 5.48 -51.93 -0.28 0.88 16 23 H 0.27 8.35 8.73 -40.82 -0.36 7.99 16 24 H 0.34 7.98 8.25 -39.30 -0.32 7.66 16 25 H 0.08 1.46 7.58 -51.93 -0.39 1.07 16 26 H 0.04 0.69 8.06 -51.93 -0.42 0.27 16 27 H 0.15 1.94 8.06 -52.49 -0.42 1.52 16 28 H 0.17 1.36 8.06 -52.48 -0.42 0.93 16 29 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.09 0.72 8.14 -51.93 -0.42 0.30 16 LS Contribution 263.81 15.07 3.98 3.98 Total: -1.00 -33.13 263.81 -5.34 -38.47 By element: Atomic # 1 Polarization: 7.89 SS G_CDS: -4.31 Total: 3.58 kcal Atomic # 6 Polarization: -13.02 SS G_CDS: -0.73 Total: -13.76 kcal Atomic # 7 Polarization: -53.53 SS G_CDS: 0.22 Total: -53.31 kcal Atomic # 14 Polarization: 25.53 SS G_CDS: -4.50 Total: 21.04 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -33.13 -5.34 -38.47 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124751354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.894 kcal (2) G-P(sol) polarization free energy of solvation -33.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.338 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds