Wall clock time and date at job start Sun Mar 29 2020 21:59:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.47081 * 2 1 4 4 C 1.50693 * 109.47424 * 120.00427 * 2 1 3 5 5 H 1.08001 * 120.00156 * 114.36298 * 4 2 1 6 6 C 1.37883 * 119.99975 * 294.35995 * 4 2 1 7 7 N 1.31514 * 119.99792 * 156.55708 * 6 4 2 8 8 Si 1.86795 * 120.00000 * 336.83419 * 6 4 2 9 9 H 1.48494 * 109.47243 * 179.72421 * 8 6 4 10 10 H 1.48501 * 109.46953 * 299.72341 * 8 6 4 11 11 H 1.48500 * 109.47267 * 59.72084 * 8 6 4 12 12 N 1.46904 * 109.46945 * 240.00336 * 2 1 3 13 13 C 1.46904 * 111.00152 * 84.99616 * 12 2 1 14 14 C 1.50701 * 109.47201 * 180.02562 * 13 12 2 15 15 C 1.39867 * 125.89533 * 94.71612 * 14 13 12 16 16 C 1.35318 * 107.91541 * 179.86296 * 15 14 13 17 17 N 1.34946 * 107.74890 * 0.39473 * 16 15 14 18 18 C 1.46502 * 126.04064 * 179.74723 * 17 16 15 19 19 N 1.30842 * 125.89693 * 275.02577 * 14 13 12 20 20 H 1.08996 * 109.47340 * 53.06482 * 1 2 3 21 21 H 1.09000 * 109.46855 * 173.06646 * 1 2 3 22 22 H 1.08997 * 109.46527 * 293.06430 * 1 2 3 23 23 H 0.96996 * 119.99955 * 355.20631 * 7 6 4 24 24 H 1.00892 * 111.00201 * 208.95025 * 12 2 1 25 25 H 1.08999 * 109.46981 * 300.00553 * 13 12 2 26 26 H 1.09000 * 109.46851 * 60.00077 * 13 12 2 27 27 H 1.07997 * 126.04465 * 359.97438 * 15 14 13 28 28 H 1.08004 * 126.12646 * 180.14770 * 16 15 14 29 29 H 1.09000 * 109.47133 * 269.98071 * 18 17 16 30 30 H 1.09005 * 109.46566 * 29.97763 * 18 17 16 31 31 H 1.09001 * 109.47105 * 149.97397 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7104 1.2303 5 1 2.5762 -1.6386 1.1338 6 6 1.7979 -0.1756 2.4794 7 7 1.8017 -0.9541 3.5393 8 14 1.4670 1.6534 2.6650 9 1 1.2409 1.9727 4.0975 10 1 2.6359 2.4211 2.1653 11 1 0.2613 2.0206 1.8798 12 7 2.0196 -0.6925 -1.1995 13 6 2.0823 0.2227 -2.3470 14 6 2.5872 -0.5217 -3.5562 15 6 1.7943 -1.1213 -4.5401 16 6 2.6190 -1.6827 -5.4543 17 7 3.8886 -1.4543 -5.0581 18 6 5.1009 -1.8930 -5.7540 19 7 3.8428 -0.7235 -3.8639 20 1 -0.3634 0.6175 -0.8214 21 1 -0.3633 -1.0202 -0.1241 22 1 -0.3632 0.4026 0.9455 23 1 1.9002 -1.9135 3.4360 24 1 2.9172 -1.1204 -1.0289 25 1 1.0869 0.6164 -2.5525 26 1 2.7587 1.0463 -2.1183 27 1 0.7147 -1.1326 -4.5666 28 1 2.3155 -2.2210 -6.3401 29 1 5.3922 -2.8784 -5.3902 30 1 4.9064 -1.9441 -6.8253 31 1 5.9059 -1.1830 -5.5643 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124751354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:25 Heat of formation + Delta-G solvation = 52.151891 kcal Electronic energy + Delta-G solvation = -13341.981721 eV Core-core repulsion = 11045.127317 eV Total energy + Delta-G solvation = -2296.854404 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -42.04294 -37.93397 -35.09527 -33.90932 -31.48505 -30.82485 -28.11748 -26.79930 -25.21295 -21.99950 -21.55353 -20.77053 -19.59476 -17.84263 -16.65026 -16.41872 -15.90922 -15.51493 -15.30468 -14.60886 -14.39978 -14.12355 -13.63891 -13.41531 -13.28442 -13.14830 -12.93532 -12.48766 -12.29222 -11.91531 -11.67544 -11.49827 -11.05621 -10.41245 -10.26645 -9.47100 -9.20889 -8.76229 -6.35859 0.96301 1.47599 1.53577 1.72059 1.74001 1.83019 2.49646 3.00055 3.55023 3.74842 3.94453 4.20772 4.37517 4.43993 4.56549 4.61197 4.68307 4.86554 4.88790 4.94336 4.99002 5.12709 5.16721 5.61808 5.66688 5.79009 6.03346 6.23040 6.25551 6.60979 6.71501 6.79701 7.39185 8.58970 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.055885 B = 0.006554 C = 0.006370 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 500.912713 B = 4271.017967 C = 4394.549742 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.191 3.809 3 H -0.001 1.001 4 C -0.618 4.618 5 H 0.019 0.981 6 C -0.010 4.010 7 N -0.928 5.928 8 Si 1.080 2.920 9 H -0.285 1.285 10 H -0.271 1.271 11 H -0.243 1.243 12 N -0.676 5.676 13 C 0.139 3.861 14 C 0.066 3.934 15 C -0.279 4.279 16 C 0.062 3.938 17 N -0.383 5.383 18 C 0.094 3.906 19 N -0.342 5.342 20 H 0.054 0.946 21 H 0.039 0.961 22 H 0.042 0.958 23 H 0.254 0.746 24 H 0.327 0.673 25 H 0.100 0.900 26 H 0.028 0.972 27 H 0.158 0.842 28 H 0.221 0.779 29 H 0.080 0.920 30 H 0.124 0.876 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 1.357 -20.958 21.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C 0.082 3.918 3 H 0.016 0.984 4 C -0.655 4.655 5 H 0.037 0.963 6 C -0.210 4.210 7 N -0.562 5.562 8 Si 0.901 3.099 9 H -0.211 1.211 10 H -0.196 1.196 11 H -0.167 1.167 12 N -0.307 5.307 13 C 0.008 3.992 14 C -0.100 4.100 15 C -0.308 4.308 16 C -0.084 4.084 17 N -0.166 5.166 18 C -0.046 4.046 19 N -0.166 5.166 20 H 0.073 0.927 21 H 0.058 0.942 22 H 0.060 0.940 23 H 0.062 0.938 24 H 0.144 0.856 25 H 0.118 0.882 26 H 0.046 0.954 27 H 0.176 0.824 28 H 0.237 0.763 29 H 0.099 0.901 30 H 0.143 0.857 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 1.796 2.418 -19.771 19.999 hybrid contribution 0.560 -1.451 -0.609 1.671 sum 2.356 0.967 -20.380 20.539 Atomic orbital electron populations 1.21934 0.96539 1.00364 0.99660 1.19338 0.93345 0.91970 0.87192 0.98370 1.22227 1.40376 1.09492 0.93451 0.96298 1.27144 0.92547 1.09628 0.91682 1.70967 1.46595 1.05651 1.33015 0.83602 0.79008 0.70721 0.76604 1.21118 1.19596 1.16668 1.60594 1.32321 1.32891 1.04906 1.20312 1.00380 0.92093 0.86421 1.22346 0.90971 0.99297 0.97338 1.21673 1.01590 1.09819 0.97717 1.23184 0.83419 1.00418 1.01369 1.48887 1.07566 1.42096 1.18022 1.22188 0.83654 1.01027 0.97727 1.77242 1.20989 1.17286 1.01121 0.92674 0.94155 0.93955 0.93755 0.85617 0.88201 0.95364 0.82399 0.76288 0.90120 0.85749 0.89757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.64 9.09 71.98 0.65 -4.99 16 2 C 0.19 9.39 2.20 44.17 0.10 9.49 16 3 H 0.00 -0.06 6.37 -2.39 -0.02 -0.07 16 4 C -0.62 -36.53 8.77 25.60 0.22 -36.30 16 5 H 0.02 1.23 7.92 -2.91 -0.02 1.21 16 6 C -0.01 -0.61 5.19 84.66 0.44 -0.17 16 7 N -0.93 -59.13 13.70 21.45 0.29 -58.84 16 8 Si 1.08 50.62 26.45 68.60 1.81 52.44 16 9 H -0.29 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.27 -11.99 7.11 99.48 0.71 -11.28 16 11 H -0.24 -10.06 6.15 99.48 0.61 -9.45 16 12 N -0.68 -30.43 6.29 -499.46 -3.14 -33.57 16 13 C 0.14 5.17 6.04 85.56 0.52 5.69 16 14 C 0.07 2.29 6.73 43.10 0.29 2.58 16 15 C -0.28 -7.79 10.74 21.99 0.24 -7.55 16 16 C 0.06 1.34 11.49 83.54 0.96 2.30 16 17 N -0.38 -9.67 4.01 -369.55 -1.48 -11.15 16 18 C 0.09 1.34 11.47 127.77 1.47 2.81 16 19 N -0.34 -12.02 12.58 -47.38 -0.60 -12.62 16 20 H 0.05 2.04 7.64 -2.39 -0.02 2.02 16 21 H 0.04 1.84 8.14 -2.39 -0.02 1.82 16 22 H 0.04 1.91 5.48 -2.39 -0.01 1.90 16 23 H 0.25 16.47 8.73 -92.71 -0.81 15.66 16 24 H 0.33 15.92 8.25 -89.70 -0.74 15.18 16 25 H 0.10 3.32 7.58 -2.39 -0.02 3.30 16 26 H 0.03 1.08 8.06 -2.39 -0.02 1.06 16 27 H 0.16 3.84 8.06 -2.91 -0.02 3.82 16 28 H 0.22 2.29 8.06 -2.91 -0.02 2.26 16 29 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.12 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -74.11 263.81 2.02 -72.10 By element: Atomic # 1 Polarization: 17.54 SS G_CDS: 0.25 Total: 17.78 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.88 Total: -26.14 kcal Atomic # 7 Polarization: -111.25 SS G_CDS: -4.93 Total: -116.17 kcal Atomic # 14 Polarization: 50.62 SS G_CDS: 1.81 Total: 52.44 kcal Total: -74.11 2.02 -72.10 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124751354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.249 kcal (2) G-P(sol) polarization free energy of solvation -74.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.135 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.017 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.097 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds