Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.39869 * 125.89401 * 94.71635 * 14 13 12 16 16 C 1.35326 * 107.91565 * 179.86677 * 15 14 13 17 17 N 1.34944 * 107.74344 * 0.39213 * 16 15 14 18 18 C 1.46503 * 126.03241 * 179.75051 * 17 16 15 19 19 N 1.30834 * 125.90089 * 275.02733 * 14 13 12 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 25 25 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 26 26 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 27 27 H 1.08000 * 126.04688 * 359.97438 * 15 14 13 28 28 H 1.07996 * 126.12060 * 180.14876 * 16 15 14 29 29 H 1.08995 * 109.47248 * 269.97274 * 18 17 16 30 30 H 1.09004 * 109.47197 * 29.97948 * 18 17 16 31 31 H 1.09004 * 109.47012 * 149.97314 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.9161 -0.5767 3.9895 16 6 3.9584 -1.3391 5.1067 17 7 2.7024 -1.7591 5.3657 18 6 2.2928 -2.6144 6.4825 19 7 1.8595 -1.2330 4.3784 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 2.9173 -1.1206 1.0287 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6164 2.5525 27 1 4.7591 -0.0943 3.5172 28 1 4.8401 -1.5731 5.6848 29 1 2.3498 -3.6598 6.1794 30 1 2.9553 -2.4455 7.3315 31 1 1.2685 -2.3740 6.7675 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124751585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = 78.116390 kcal Electronic energy + Delta-G solvation = -13292.964644 eV Core-core repulsion = 10997.236145 eV Total energy + Delta-G solvation = -2295.728499 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -40.86708 -35.94343 -33.49165 -32.08097 -29.91107 -28.97457 -26.56394 -25.19740 -23.80009 -20.89846 -19.76649 -19.37858 -16.91214 -16.25829 -15.31456 -14.87839 -14.31547 -13.80815 -13.56992 -13.17307 -13.15373 -12.50562 -12.39425 -12.03507 -11.62785 -11.08731 -10.83628 -10.70118 -10.32206 -10.19842 -10.05241 -9.92169 -9.01346 -8.74775 -8.43025 -8.33432 -7.18655 -5.97591 -4.03647 2.11275 2.71484 3.08973 3.33867 3.39862 3.43323 4.45110 4.60978 4.91155 5.10075 5.20947 5.33549 5.34728 5.53938 5.81028 5.97616 6.10330 6.26760 6.44642 6.91572 6.98124 7.20161 7.23093 7.30412 7.56969 7.83547 7.95954 8.05219 8.33932 8.46011 8.73152 9.07065 9.61924 11.08815 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057277 B = 0.006150 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.735293 B = 4551.748456 C = 4714.566501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.003 0.997 4 C -0.516 4.516 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.287 1.287 11 H -0.275 1.275 12 N -0.681 5.681 13 C 0.137 3.863 14 C 0.091 3.909 15 C -0.267 4.267 16 C 0.043 3.957 17 N -0.387 5.387 18 C 0.105 3.895 19 N -0.280 5.280 20 H 0.080 0.920 21 H 0.005 0.995 22 H 0.031 0.969 23 H 0.260 0.740 24 H 0.332 0.668 25 H 0.041 0.959 26 H 0.077 0.923 27 H 0.145 0.855 28 H 0.169 0.831 29 H 0.071 0.929 30 H 0.082 0.918 31 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.314 -3.351 14.817 16.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.021 0.979 4 C -0.555 4.555 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.529 5.529 8 Si 0.725 3.275 9 H -0.207 1.207 10 H -0.213 1.213 11 H -0.200 1.200 12 N -0.313 5.313 13 C 0.005 3.995 14 C -0.076 4.076 15 C -0.297 4.297 16 C -0.103 4.103 17 N -0.169 5.169 18 C -0.036 4.036 19 N -0.102 5.102 20 H 0.099 0.901 21 H 0.024 0.976 22 H 0.050 0.950 23 H 0.070 0.930 24 H 0.149 0.851 25 H 0.059 0.941 26 H 0.095 0.905 27 H 0.162 0.838 28 H 0.186 0.814 29 H 0.089 0.911 30 H 0.100 0.900 31 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges 3.397 -3.989 15.259 16.133 hybrid contribution 1.966 0.258 -1.156 2.295 sum 5.363 -3.731 14.103 15.543 Atomic orbital electron populations 1.21717 0.97809 0.99423 0.99351 1.19134 0.92708 0.92375 0.85330 0.97949 1.21259 1.31379 1.12450 0.90410 0.92221 1.24912 0.95097 0.94996 0.98996 1.69904 1.36740 1.22875 1.23401 0.86515 0.79201 0.79302 0.82463 1.20660 1.21301 1.19960 1.60703 1.32309 1.32818 1.05447 1.20269 1.00112 0.92449 0.86636 1.22528 0.91993 0.96688 0.96394 1.21470 0.97884 1.09863 1.00485 1.22413 0.89153 0.99474 0.99213 1.48569 1.05505 1.40190 1.22660 1.21748 1.02565 0.93456 0.85874 1.77425 1.16952 1.15198 1.00641 0.90107 0.97592 0.94962 0.92963 0.85060 0.94133 0.90455 0.83772 0.81425 0.91081 0.89978 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.24 9.19 37.16 0.34 -2.90 16 2 C 0.21 5.56 2.60 -68.86 -0.18 5.38 16 3 H 0.00 0.08 7.80 -51.93 -0.40 -0.32 16 4 C -0.52 -14.51 8.59 -34.44 -0.30 -14.81 16 5 H 0.06 1.66 7.62 -52.49 -0.40 1.26 16 6 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 7 N -0.89 -25.81 11.32 55.43 0.63 -25.18 16 8 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 9 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.68 -15.62 6.29 -109.21 -0.69 -16.30 16 13 C 0.14 2.72 6.04 -4.97 -0.03 2.69 16 14 C 0.09 1.68 6.73 -82.41 -0.55 1.12 16 15 C -0.27 -4.07 10.74 -40.01 -0.43 -4.50 16 16 C 0.04 0.55 11.49 -17.22 -0.20 0.35 16 17 N -0.39 -5.49 4.01 -68.16 -0.27 -5.76 16 18 C 0.11 0.94 11.47 59.85 0.69 1.63 16 19 N -0.28 -5.18 12.58 33.67 0.42 -4.76 16 20 H 0.08 2.25 6.07 -51.93 -0.32 1.93 16 21 H 0.01 0.12 7.45 -51.93 -0.39 -0.26 16 22 H 0.03 0.83 8.14 -51.93 -0.42 0.41 16 23 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 24 H 0.33 7.47 8.22 -39.29 -0.32 7.15 16 25 H 0.04 0.77 8.05 -51.93 -0.42 0.35 16 26 H 0.08 1.58 7.44 -51.93 -0.39 1.20 16 27 H 0.14 1.93 8.06 -52.49 -0.42 1.51 16 28 H 0.17 1.39 8.06 -52.49 -0.42 0.97 16 29 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16 30 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 LS Contribution 266.86 15.07 4.02 4.02 Total: -1.00 -32.19 266.86 -5.97 -38.16 By element: Atomic # 1 Polarization: 6.98 SS G_CDS: -4.31 Total: 2.68 kcal Atomic # 6 Polarization: -8.66 SS G_CDS: -0.75 Total: -9.41 kcal Atomic # 7 Polarization: -52.09 SS G_CDS: 0.09 Total: -52.00 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.02 Total: 4.02 kcal Total: -32.19 -5.97 -38.16 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124751585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 116.272 kcal (2) G-P(sol) polarization free energy of solvation -32.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 78.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds