Wall clock time and date at job start Sun Mar 29 2020 21:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46755 * 90.00221 * 8 6 4 10 10 H 1.48498 * 109.46866 * 210.00208 * 8 6 4 11 11 H 1.48496 * 109.47178 * 330.00271 * 8 6 4 12 12 N 1.46906 * 109.47302 * 120.00193 * 2 1 3 13 13 C 1.46904 * 110.99716 * 274.99847 * 12 2 1 14 14 C 1.50700 * 109.47105 * 179.97438 * 13 12 2 15 15 C 1.39869 * 125.89401 * 94.71635 * 14 13 12 16 16 C 1.35326 * 107.91565 * 179.86677 * 15 14 13 17 17 N 1.34944 * 107.74344 * 0.39213 * 16 15 14 18 18 C 1.46503 * 126.03241 * 179.75051 * 17 16 15 19 19 N 1.30834 * 125.90089 * 275.02733 * 14 13 12 20 20 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 21 21 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 22 22 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 23 23 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 24 24 H 1.00897 * 110.99997 * 151.04377 * 12 2 1 25 25 H 1.08996 * 109.46868 * 300.00084 * 13 12 2 26 26 H 1.09007 * 109.46973 * 59.99616 * 13 12 2 27 27 H 1.08000 * 126.04688 * 359.97438 * 15 14 13 28 28 H 1.07996 * 126.12060 * 180.14876 * 16 15 14 29 29 H 1.08995 * 109.47248 * 269.97274 * 18 17 16 30 30 H 1.09004 * 109.47197 * 29.97948 * 18 17 16 31 31 H 1.09004 * 109.47012 * 149.97314 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 1.3447 -2.1617 -4.4123 10 1 2.4872 -0.1403 -5.1120 11 1 3.6308 -1.7567 -3.7120 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2226 2.3469 14 6 2.5874 -0.5218 3.5560 15 6 3.9161 -0.5767 3.9895 16 6 3.9584 -1.3391 5.1067 17 7 2.7024 -1.7591 5.3657 18 6 2.2928 -2.6144 6.4825 19 7 1.8595 -1.2330 4.3784 20 1 -0.3633 0.5138 -0.8900 21 1 -0.3633 0.5139 0.8900 22 1 -0.3634 -1.0277 0.0005 23 1 0.7089 1.1613 -3.4844 24 1 2.9173 -1.1206 1.0287 25 1 2.7589 1.0461 2.1182 26 1 1.0871 0.6164 2.5525 27 1 4.7591 -0.0943 3.5172 28 1 4.8401 -1.5731 5.6848 29 1 2.3498 -3.6598 6.1794 30 1 2.9553 -2.4455 7.3315 31 1 1.2685 -2.3740 6.7675 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124751585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:59:27 Heat of formation + Delta-G solvation = 55.050268 kcal Electronic energy + Delta-G solvation = -13293.964866 eV Core-core repulsion = 10997.236145 eV Total energy + Delta-G solvation = -2296.728721 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.122 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -42.01208 -37.80762 -35.04930 -33.72188 -31.14982 -30.67032 -27.96806 -27.22706 -25.29079 -21.95085 -21.78990 -20.72955 -18.57318 -17.68730 -16.91091 -16.32188 -16.01186 -15.38260 -14.97999 -14.69767 -14.43165 -13.96727 -13.50071 -13.41813 -13.16388 -12.93536 -12.66892 -12.60818 -12.25462 -12.19881 -11.93946 -11.42939 -10.91292 -10.56717 -10.18590 -9.46016 -9.05981 -8.11879 -6.26268 1.01014 1.43986 1.45285 1.55598 1.75998 1.84552 2.43871 3.16634 3.63078 3.76749 4.07469 4.24591 4.42357 4.48494 4.64683 4.71919 4.82165 4.84560 4.94881 5.08572 5.19094 5.21138 5.45818 5.66144 5.69777 5.84723 6.21340 6.27081 6.46397 6.73577 6.85510 6.99038 7.43807 8.94159 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057277 B = 0.006150 C = 0.005938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 488.735293 B = 4551.748456 C = 4714.566501 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C 0.216 3.784 3 H -0.023 1.023 4 C -0.538 4.538 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.918 5.918 8 Si 0.966 3.034 9 H -0.277 1.277 10 H -0.281 1.281 11 H -0.267 1.267 12 N -0.681 5.681 13 C 0.142 3.858 14 C 0.067 3.933 15 C -0.291 4.291 16 C 0.066 3.934 17 N -0.384 5.384 18 C 0.094 3.906 19 N -0.327 5.327 20 H 0.061 0.939 21 H 0.019 0.981 22 H 0.024 0.976 23 H 0.263 0.737 24 H 0.334 0.666 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.156 0.844 28 H 0.221 0.779 29 H 0.082 0.918 30 H 0.124 0.876 31 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.851 -4.592 16.034 18.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.108 3.892 3 H -0.005 1.005 4 C -0.576 4.576 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.557 5.557 8 Si 0.791 3.209 9 H -0.203 1.203 10 H -0.207 1.207 11 H -0.191 1.191 12 N -0.313 5.313 13 C 0.011 3.989 14 C -0.099 4.099 15 C -0.321 4.321 16 C -0.080 4.080 17 N -0.166 5.166 18 C -0.046 4.046 19 N -0.151 5.151 20 H 0.079 0.921 21 H 0.038 0.962 22 H 0.043 0.957 23 H 0.073 0.927 24 H 0.151 0.849 25 H 0.064 0.936 26 H 0.082 0.918 27 H 0.174 0.826 28 H 0.238 0.762 29 H 0.100 0.900 30 H 0.142 0.858 31 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.925 -5.237 16.499 17.997 hybrid contribution 1.491 0.616 -1.385 2.126 sum 6.416 -4.621 15.114 17.058 Atomic orbital electron populations 1.21555 0.97902 0.98682 0.99035 1.18950 0.92634 0.91121 0.86501 1.00529 1.21545 1.31850 1.12711 0.91524 0.92369 1.25744 0.95121 0.95657 1.02033 1.70026 1.37414 1.23994 1.24249 0.85441 0.78824 0.78147 0.78492 1.20269 1.20658 1.19133 1.60597 1.32447 1.33248 1.05015 1.20125 0.99667 0.92459 0.86629 1.22277 0.93619 0.97749 0.96218 1.21714 0.96915 1.11483 1.01981 1.23153 0.89941 0.96849 0.98080 1.48968 1.05661 1.39600 1.22404 1.22190 1.03666 0.93193 0.85537 1.77292 1.18997 1.16548 1.02302 0.92068 0.96182 0.95712 0.92748 0.84897 0.93602 0.91823 0.82602 0.76209 0.89955 0.85800 0.89769 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -6.05 9.19 71.98 0.66 -5.39 16 2 C 0.22 11.64 2.60 44.17 0.11 11.75 16 3 H -0.02 -1.32 7.80 -2.39 -0.02 -1.34 16 4 C -0.54 -30.61 8.59 25.60 0.22 -30.39 16 5 H 0.06 3.25 7.62 -2.91 -0.02 3.23 16 6 C 0.01 0.77 5.30 84.65 0.45 1.22 16 7 N -0.92 -53.84 11.32 21.45 0.24 -53.60 16 8 Si 0.97 44.21 29.54 68.60 2.03 46.24 16 9 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 10 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 11 H -0.27 -11.79 7.11 99.48 0.71 -11.09 16 12 N -0.68 -31.93 6.29 -499.43 -3.14 -35.07 16 13 C 0.14 5.81 6.04 85.56 0.52 6.33 16 14 C 0.07 2.45 6.73 43.10 0.29 2.74 16 15 C -0.29 -8.42 10.74 21.99 0.24 -8.18 16 16 C 0.07 1.46 11.49 83.54 0.96 2.42 16 17 N -0.38 -9.92 4.01 -369.55 -1.48 -11.40 16 18 C 0.09 1.37 11.47 127.77 1.47 2.83 16 19 N -0.33 -11.98 12.58 -47.39 -0.60 -12.58 16 20 H 0.06 3.49 6.07 -2.39 -0.01 3.48 16 21 H 0.02 0.95 7.45 -2.39 -0.02 0.94 16 22 H 0.02 1.29 8.14 -2.38 -0.02 1.27 16 23 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 24 H 0.33 15.27 8.22 -89.70 -0.74 14.53 16 25 H 0.05 1.79 8.05 -2.39 -0.02 1.77 16 26 H 0.06 2.71 7.44 -2.38 -0.02 2.69 16 27 H 0.16 3.95 8.06 -2.91 -0.02 3.92 16 28 H 0.22 2.35 8.06 -2.91 -0.02 2.33 16 29 H 0.08 1.05 8.14 -2.39 -0.02 1.03 16 30 H 0.12 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.08 1.28 8.14 -2.38 -0.02 1.26 16 Total: -1.00 -70.34 266.86 2.34 -68.00 By element: Atomic # 1 Polarization: 14.69 SS G_CDS: 0.38 Total: 15.07 kcal Atomic # 6 Polarization: -21.57 SS G_CDS: 4.91 Total: -16.66 kcal Atomic # 7 Polarization: -107.67 SS G_CDS: -4.98 Total: -112.65 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.24 kcal Total: -70.34 2.34 -68.00 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124751585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 123.050 kcal (2) G-P(sol) polarization free energy of solvation -70.341 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds