Wall clock time and date at job start Sun Mar 29 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47301 * 274.98185 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.98548 * 3 2 1 6 6 H 1.48507 * 109.46951 * 154.98447 * 3 2 1 7 7 C 1.40049 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99810 * 186.12960 * 7 2 1 9 9 C 1.46367 * 119.99801 * 6.12095 * 7 2 1 10 10 O 1.21683 * 120.00507 * 353.62768 * 9 7 2 11 11 N 1.34783 * 119.99655 * 173.89776 * 9 7 2 12 12 C 1.49725 * 126.16437 * 359.69613 * 11 9 7 13 13 C 1.52025 * 102.05199 * 153.32332 * 12 11 9 14 14 H 1.09008 * 112.09292 * 289.44854 * 13 12 11 15 15 C 1.51619 * 122.89141 * 152.53046 * 13 12 11 16 16 C 1.56313 * 101.79383 * 208.85061 * 15 13 12 17 17 C 1.55972 * 105.75998 * 25.53192 * 16 15 13 18 18 C 1.49860 * 103.99669 * 7.08429 * 17 16 15 19 19 H 1.09001 * 108.88996 * 77.48115 * 18 17 16 20 20 C 1.49471 * 126.15991 * 180.02562 * 11 9 7 21 21 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 22 22 H 1.09004 * 110.85731 * 271.58515 * 12 11 9 23 23 H 1.09002 * 110.85614 * 35.23757 * 12 11 9 24 24 H 1.09001 * 110.95930 * 90.72066 * 15 13 12 25 25 H 1.08998 * 110.99265 * 326.99627 * 15 13 12 26 26 H 1.09001 * 110.19372 * 266.45646 * 16 15 13 27 27 H 1.08996 * 110.18817 * 144.60444 * 16 15 13 28 28 H 1.08999 * 110.52429 * 248.45545 * 17 16 15 29 29 H 1.09002 * 110.64144 * 125.76739 * 17 16 15 30 30 H 1.08998 * 110.43448 * 292.40505 * 20 11 9 31 31 H 1.08998 * 110.43193 * 54.77922 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0993 9 6 1.2814 -2.4767 -0.1363 10 8 0.0646 -2.4833 -0.1320 11 7 1.9612 -3.6340 -0.2605 12 6 3.4505 -3.7858 -0.2832 13 6 3.6333 -5.2018 0.2388 14 1 3.3968 -5.2813 1.3000 15 6 4.8228 -6.0675 -0.1278 16 6 4.2148 -7.5042 -0.0296 17 6 2.6838 -7.3339 -0.2740 18 6 2.5370 -5.8946 -0.6648 19 1 2.8497 -5.7770 -1.7024 20 6 1.3638 -4.9962 -0.4073 21 1 -0.4849 0.8400 0.0004 22 1 3.8348 -3.6912 -1.2989 23 1 3.9244 -3.0632 0.3811 24 1 5.6348 -5.9377 0.5877 25 1 5.1619 -5.8559 -1.1419 26 1 4.3936 -7.9214 0.9614 27 1 4.6484 -8.1491 -0.7939 28 1 2.1258 -7.5407 0.6392 29 1 2.3488 -7.9851 -1.0813 30 1 0.8545 -5.2894 0.5106 31 1 0.6721 -5.0197 -1.2494 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126221721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:22 Heat of formation + Delta-G solvation = -30.573180 kcal Electronic energy + Delta-G solvation = -13927.132363 eV Core-core repulsion = 11594.397979 eV Total energy + Delta-G solvation = -2332.734383 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.17 seconds Orbital eigenvalues (eV) -39.80317 -36.61274 -33.79478 -32.42477 -29.99018 -28.57182 -26.34294 -25.34904 -22.63518 -19.96979 -19.52779 -19.04451 -16.52498 -15.68244 -15.36193 -14.50117 -14.34648 -14.15930 -13.44222 -13.09504 -12.58428 -11.98597 -11.82843 -11.39754 -11.17014 -11.08725 -10.98455 -10.85960 -10.82186 -10.46469 -10.33693 -10.18148 -10.11410 -9.56157 -8.83096 -7.59104 -7.18237 -6.18328 -4.61307 3.14920 3.21687 3.25460 4.07094 4.30373 4.44856 4.59220 4.88048 5.02254 5.34976 5.45283 5.51774 5.63588 5.82624 5.85168 5.88424 5.97019 5.99784 6.16556 6.20276 6.25223 6.42323 6.49150 6.56109 6.75824 6.77470 7.27692 7.46451 8.12676 8.43379 9.04198 9.52831 10.60219 10.79382 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057468 B = 0.008173 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.107966 B = 3425.257410 C = 3842.224047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.769 5.769 2 C 0.087 3.913 3 Si 0.908 3.092 4 H -0.272 1.272 5 H -0.279 1.279 6 H -0.264 1.264 7 C -0.540 4.540 8 H 0.070 0.930 9 C 0.573 3.427 10 O -0.578 6.578 11 N -0.651 5.651 12 C 0.134 3.866 13 C -0.125 4.125 14 H 0.083 0.917 15 C -0.106 4.106 16 C -0.121 4.121 17 C -0.100 4.100 18 C -0.125 4.125 19 H 0.068 0.932 20 C 0.136 3.864 21 H 0.268 0.732 22 H 0.051 0.949 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.067 0.933 26 H 0.063 0.937 27 H 0.061 0.939 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.047 0.953 31 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.435 -10.294 -0.485 13.972 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C -0.133 4.133 3 Si 0.733 3.267 4 H -0.198 1.198 5 H -0.204 1.204 6 H -0.188 1.188 7 C -0.577 4.577 8 H 0.088 0.912 9 C 0.379 3.621 10 O -0.460 6.460 11 N -0.393 5.393 12 C 0.011 3.989 13 C -0.144 4.144 14 H 0.102 0.898 15 C -0.144 4.144 16 C -0.159 4.159 17 C -0.138 4.138 18 C -0.145 4.145 19 H 0.087 0.913 20 C 0.013 3.987 21 H 0.079 0.921 22 H 0.069 0.931 23 H 0.089 0.911 24 H 0.083 0.917 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.081 0.919 30 H 0.066 0.934 31 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 8.504 -10.077 -0.474 13.195 hybrid contribution 0.490 0.771 -0.065 0.916 sum 8.994 -9.306 -0.539 12.954 Atomic orbital electron populations 1.70035 1.07106 1.27276 1.35400 1.25734 0.94608 1.00311 0.92627 0.86353 0.80238 0.81447 0.78694 1.19776 1.20418 1.18846 1.20894 0.94117 0.89168 1.53507 0.91207 1.18058 0.86586 0.81216 0.76236 1.90604 1.13937 1.85517 1.55971 1.50046 1.04315 1.05118 1.79780 1.21459 0.83998 0.94241 0.99250 1.22838 0.95868 0.95782 0.99952 0.89824 1.21890 0.96772 0.94299 1.01403 1.22945 0.94838 0.96826 1.01255 1.21355 0.96059 0.95144 1.01250 1.21915 0.97632 0.94612 1.00291 0.91315 1.20680 0.93995 0.84094 0.99976 0.92101 0.93115 0.91131 0.91717 0.91384 0.91828 0.91986 0.91667 0.91873 0.93425 0.92866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.77 -23.59 11.86 55.55 0.66 -22.93 16 2 C 0.09 2.47 5.49 -17.37 -0.10 2.38 16 3 Si 0.91 20.46 29.56 -169.99 -5.03 15.44 16 4 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 5 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 6 H -0.26 -5.73 7.11 56.52 0.40 -5.33 16 7 C -0.54 -15.70 9.03 -35.63 -0.32 -16.03 16 8 H 0.07 1.87 6.62 -52.49 -0.35 1.52 16 9 C 0.57 17.13 7.81 -12.99 -0.10 17.03 16 10 O -0.58 -19.59 15.42 5.20 0.08 -19.51 16 11 N -0.65 -15.73 3.43 -172.53 -0.59 -16.32 16 12 C 0.13 2.56 6.36 -2.74 -0.02 2.54 16 13 C -0.13 -1.92 3.19 -89.04 -0.28 -2.21 16 14 H 0.08 1.35 8.14 -51.92 -0.42 0.92 16 15 C -0.11 -1.24 6.60 -25.65 -0.17 -1.41 16 16 C -0.12 -1.28 6.95 -23.36 -0.16 -1.44 16 17 C -0.10 -1.22 6.72 -26.70 -0.18 -1.40 16 18 C -0.13 -1.95 2.63 -90.89 -0.24 -2.19 16 19 H 0.07 1.07 7.94 -51.93 -0.41 0.66 16 20 C 0.14 2.77 6.84 -3.88 -0.03 2.74 16 21 H 0.27 7.42 8.29 -40.82 -0.34 7.08 16 22 H 0.05 0.92 8.13 -51.93 -0.42 0.50 16 23 H 0.07 1.37 7.09 -51.93 -0.37 1.00 16 24 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 25 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 26 H 0.06 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 1.13 8.14 -51.93 -0.42 0.71 16 LS Contribution 254.56 15.07 3.84 3.84 Total: -1.00 -34.44 254.56 -7.13 -41.56 By element: Atomic # 1 Polarization: 2.38 SS G_CDS: -4.49 Total: -2.11 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.60 Total: 0.02 kcal Atomic # 7 Polarization: -39.31 SS G_CDS: 0.07 Total: -39.25 kcal Atomic # 8 Polarization: -19.59 SS G_CDS: 0.08 Total: -19.51 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.03 Total: 15.44 kcal Total LS contribution 3.84 Total: 3.84 kcal Total: -34.44 -7.13 -41.56 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126221721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.991 kcal (2) G-P(sol) polarization free energy of solvation -34.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.564 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.17 seconds