Wall clock time and date at job start Sun Mar 29 2020 21:36:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30675 * 1 3 3 Si 1.86800 * 119.99832 * 2 1 4 4 H 1.48501 * 109.47301 * 274.98185 * 3 2 1 5 5 H 1.48503 * 109.47352 * 34.98548 * 3 2 1 6 6 H 1.48507 * 109.46951 * 154.98447 * 3 2 1 7 7 C 1.40049 * 120.00151 * 180.02562 * 2 1 3 8 8 H 1.07999 * 119.99810 * 186.12960 * 7 2 1 9 9 C 1.46367 * 119.99801 * 6.12095 * 7 2 1 10 10 O 1.21683 * 120.00507 * 353.62768 * 9 7 2 11 11 N 1.34783 * 119.99655 * 173.89776 * 9 7 2 12 12 C 1.49725 * 126.16437 * 359.69613 * 11 9 7 13 13 C 1.52025 * 102.05199 * 153.32332 * 12 11 9 14 14 H 1.09008 * 112.09292 * 289.44854 * 13 12 11 15 15 C 1.51619 * 122.89141 * 152.53046 * 13 12 11 16 16 C 1.56313 * 101.79383 * 208.85061 * 15 13 12 17 17 C 1.55972 * 105.75998 * 25.53192 * 16 15 13 18 18 C 1.49860 * 103.99669 * 7.08429 * 17 16 15 19 19 H 1.09001 * 108.88996 * 77.48115 * 18 17 16 20 20 C 1.49471 * 126.15991 * 180.02562 * 11 9 7 21 21 H 0.96996 * 119.99634 * 359.97438 * 1 2 3 22 22 H 1.09004 * 110.85731 * 271.58515 * 12 11 9 23 23 H 1.09002 * 110.85614 * 35.23757 * 12 11 9 24 24 H 1.09001 * 110.95930 * 90.72066 * 15 13 12 25 25 H 1.08998 * 110.99265 * 326.99627 * 15 13 12 26 26 H 1.09001 * 110.19372 * 266.45646 * 16 15 13 27 27 H 1.08996 * 110.18817 * 144.60444 * 16 15 13 28 28 H 1.08999 * 110.52429 * 248.45545 * 17 16 15 29 29 H 1.09002 * 110.64144 * 125.76739 * 17 16 15 30 30 H 1.08998 * 110.43448 * 292.40505 * 20 11 9 31 31 H 1.08998 * 110.43193 * 54.77922 * 20 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3067 0.0000 0.0000 3 14 2.2407 1.6178 0.0000 4 1 2.3829 2.1073 -1.3948 5 1 1.4948 2.6200 0.8028 6 1 3.5870 1.4121 0.5921 7 6 2.0070 -1.2128 -0.0005 8 1 3.0824 -1.2155 0.0993 9 6 1.2814 -2.4767 -0.1363 10 8 0.0646 -2.4833 -0.1320 11 7 1.9612 -3.6340 -0.2605 12 6 3.4505 -3.7858 -0.2832 13 6 3.6333 -5.2018 0.2388 14 1 3.3968 -5.2813 1.3000 15 6 4.8228 -6.0675 -0.1278 16 6 4.2148 -7.5042 -0.0296 17 6 2.6838 -7.3339 -0.2740 18 6 2.5370 -5.8946 -0.6648 19 1 2.8497 -5.7770 -1.7024 20 6 1.3638 -4.9962 -0.4073 21 1 -0.4849 0.8400 0.0004 22 1 3.8348 -3.6912 -1.2989 23 1 3.9244 -3.0632 0.3811 24 1 5.6348 -5.9377 0.5877 25 1 5.1619 -5.8559 -1.1419 26 1 4.3936 -7.9214 0.9614 27 1 4.6484 -8.1491 -0.7939 28 1 2.1258 -7.5407 0.6392 29 1 2.3488 -7.9851 -1.0813 30 1 0.8545 -5.2894 0.5106 31 1 0.6721 -5.0197 -1.2494 RHF calculation, no. of doubly occupied orbitals= 39 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126221721.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 29 2020 21:36:22 Heat of formation + Delta-G solvation = -54.253703 kcal Electronic energy + Delta-G solvation = -13928.159227 eV Core-core repulsion = 11594.397979 eV Total energy + Delta-G solvation = -2333.761248 eV No. of doubly occupied orbitals = 39 Molecular weight (most abundant/longest-lived isotopes) = 209.116 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -41.20633 -38.66785 -35.44458 -34.63643 -31.33737 -30.21253 -28.18460 -26.87375 -24.15932 -21.36759 -20.97472 -20.59768 -18.53689 -17.56354 -17.04712 -16.09559 -15.77272 -15.51002 -15.17005 -14.60936 -14.30693 -13.75240 -13.28837 -13.08938 -13.03349 -12.71283 -12.54324 -12.24533 -12.01050 -11.99155 -11.95480 -11.63677 -11.20427 -10.96735 -10.87588 -9.90278 -9.19629 -8.34186 -6.89045 1.37327 1.39301 1.55589 2.20360 2.41251 2.68048 3.08452 3.52349 3.80850 3.95076 4.17190 4.37429 4.38307 4.45246 4.58861 4.70111 4.79667 4.81384 4.91291 4.96539 5.13359 5.17646 5.24184 5.30018 5.34851 5.46591 5.56020 5.58352 5.97280 6.33971 6.82339 7.42034 8.40374 8.62883 Molecular weight = 209.12amu Principal moments of inertia in cm(-1) A = 0.057468 B = 0.008173 C = 0.007286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 487.107966 B = 3425.257410 C = 3842.224047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.824 5.824 2 C 0.026 3.974 3 Si 1.002 2.998 4 H -0.261 1.261 5 H -0.270 1.270 6 H -0.246 1.246 7 C -0.566 4.566 8 H 0.088 0.912 9 C 0.550 3.450 10 O -0.637 6.637 11 N -0.663 5.663 12 C 0.129 3.871 13 C -0.115 4.115 14 H 0.075 0.925 15 C -0.098 4.098 16 C -0.112 4.112 17 C -0.098 4.098 18 C -0.116 4.116 19 H 0.072 0.928 20 C 0.130 3.870 21 H 0.276 0.724 22 H 0.063 0.937 23 H 0.064 0.936 24 H 0.082 0.918 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.063 0.937 29 H 0.079 0.921 30 H 0.036 0.964 31 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.442 -10.942 -0.616 16.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.189 4.189 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.195 1.195 6 H -0.169 1.169 7 C -0.603 4.603 8 H 0.106 0.894 9 C 0.357 3.643 10 O -0.525 6.525 11 N -0.402 5.402 12 C 0.007 3.993 13 C -0.135 4.135 14 H 0.093 0.907 15 C -0.136 4.136 16 C -0.149 4.149 17 C -0.136 4.136 18 C -0.135 4.135 19 H 0.091 0.909 20 C 0.007 3.993 21 H 0.086 0.914 22 H 0.081 0.919 23 H 0.082 0.918 24 H 0.101 0.899 25 H 0.095 0.905 26 H 0.095 0.905 27 H 0.103 0.897 28 H 0.082 0.918 29 H 0.098 0.902 30 H 0.055 0.945 31 H 0.053 0.947 Dipole moment (debyes) X Y Z Total from point charges 11.570 -10.789 -0.607 15.831 hybrid contribution -0.486 0.912 -0.026 1.034 sum 11.084 -9.876 -0.632 14.859 Atomic orbital electron populations 1.70208 1.09718 1.29102 1.36357 1.27082 0.95558 1.05138 0.91082 0.84959 0.78933 0.74750 0.79348 1.18578 1.19478 1.16928 1.21398 0.95120 0.89772 1.53983 0.89395 1.18502 0.86285 0.83317 0.76179 1.90537 1.16294 1.87030 1.58606 1.49948 1.06933 1.05158 1.78148 1.21691 0.80651 0.96841 1.00135 1.22780 0.98078 0.93412 0.99201 0.90709 1.21924 0.95497 0.93789 1.02397 1.22916 0.92839 0.96225 1.02948 1.21430 0.97878 0.92487 1.01801 1.21848 0.94619 0.96357 1.00644 0.90924 1.20813 0.95874 0.83827 0.98747 0.91436 0.91886 0.91769 0.89938 0.90477 0.90465 0.89695 0.91782 0.90193 0.94523 0.94729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -52.31 11.86 21.84 0.26 -52.05 16 2 C 0.03 1.51 5.49 85.30 0.47 1.98 16 3 Si 1.00 41.94 29.56 68.60 2.03 43.97 16 4 H -0.26 -10.40 7.11 99.48 0.71 -9.70 16 5 H -0.27 -10.83 7.11 99.48 0.71 -10.12 16 6 H -0.25 -9.49 7.11 99.48 0.71 -8.78 16 7 C -0.57 -33.69 9.03 24.83 0.22 -33.46 16 8 H 0.09 4.71 6.62 -2.91 -0.02 4.69 16 9 C 0.55 34.45 7.81 86.36 0.67 35.12 16 10 O -0.64 -45.78 15.42 -4.29 -0.07 -45.85 16 11 N -0.66 -33.07 3.43 -817.99 -2.80 -35.87 16 12 C 0.13 4.86 6.36 85.43 0.54 5.41 16 13 C -0.12 -3.34 3.19 -9.77 -0.03 -3.37 16 14 H 0.07 2.31 8.14 -2.38 -0.02 2.29 16 15 C -0.10 -1.92 6.60 31.29 0.21 -1.72 16 16 C -0.11 -1.85 6.95 32.78 0.23 -1.63 16 17 C -0.10 -2.10 6.72 30.62 0.21 -1.89 16 18 C -0.12 -3.44 2.63 -10.97 -0.03 -3.47 16 19 H 0.07 2.13 7.94 -2.39 -0.02 2.11 16 20 C 0.13 5.49 6.84 84.83 0.58 6.07 16 21 H 0.28 15.72 8.29 -92.71 -0.77 14.95 16 22 H 0.06 2.22 8.13 -2.38 -0.02 2.20 16 23 H 0.06 2.47 7.09 -2.39 -0.02 2.45 16 24 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 25 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.13 8.14 -2.39 -0.02 1.11 16 27 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 28 H 0.06 1.40 8.14 -2.39 -0.02 1.38 16 29 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 30 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 31 H 0.03 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -79.37 254.56 3.59 -75.77 By element: Atomic # 1 Polarization: 9.88 SS G_CDS: 1.10 Total: 10.98 kcal Atomic # 6 Polarization: -0.02 SS G_CDS: 3.07 Total: 3.05 kcal Atomic # 7 Polarization: -85.38 SS G_CDS: -2.54 Total: -87.92 kcal Atomic # 8 Polarization: -45.78 SS G_CDS: -0.07 Total: -45.85 kcal Atomic # 14 Polarization: 41.94 SS G_CDS: 2.03 Total: 43.97 kcal Total: -79.37 3.59 -75.77 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126221721.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.521 kcal (2) G-P(sol) polarization free energy of solvation -79.367 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.846 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.775 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.254 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds